RNA–Protein interactions for RNA: ENST00000539950.1

VPS13A-213, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-213ENST00000539950 TOX4O94842 621 aa5.28□□□□□ -1.56
VPS13A-213ENST00000539950 APOL3O95236 402 aa5.28□□□□□ -1.56
VPS13A-213ENST00000539950 ATP2A2P16615 1042 aaKnown RBP5.28□□□□□ -1.56
VPS13A-213ENST00000539950 BCAR1P56945 870 aa5.28□□□□□ -1.56
VPS13A-213ENST00000539950 ADCY2Q08462 1091 aa5.28□□□□□ -1.56
VPS13A-213ENST00000539950 CRHR2Q13324 411 aa5.28□□□□□ -1.56
VPS13A-213ENST00000539950 C21orf62-AS1Q17RA5 79 aa5.28□□□□□ -1.56
VPS13A-213ENST00000539950 FAM111BQ6SJ93 734 aa5.28□□□□□ -1.56
VPS13A-213ENST00000539950 KANSL1Q7Z3B3 1105 aa5.28□□□□□ -1.56
VPS13A-213ENST00000539950 NME9Q86XW9 330 aa5.28□□□□□ -1.56
VPS13A-213ENST00000539950 PLA2G15Q8NCC3 412 aa5.28□□□□□ -1.56
VPS13A-213ENST00000539950 RTF1Q92541 710 aaKnown RBP5.28□□□□□ -1.56
VPS13A-213ENST00000539950 RPGRQ92834 1020 aaKnown RBP5.28□□□□□ -1.56
VPS13A-213ENST00000539950 MIEF2Q96C03 454 aa5.28□□□□□ -1.56
VPS13A-213ENST00000539950 TRIM8Q9BZR9 551 aa5.28□□□□□ -1.56
VPS13A-213ENST00000539950 PITHD1Q9GZP4 211 aaPredicted RBP5.28□□□□□ -1.56
VPS13A-213ENST00000539950 POFUT1Q9H488 388 aa5.28□□□□□ -1.56
VPS13A-213ENST00000539950 MTG2Q9H4K7 406 aa5.28□□□□□ -1.56
VPS13A-213ENST00000539950 PIF1Q9H611 641 aa5.28□□□□□ -1.56
VPS13A-213ENST00000539950 MMRN2Q9H8L6 949 aa5.28□□□□□ -1.56
VPS13A-213ENST00000539950 IL23AQ9NPF7 189 aa5.28□□□□□ -1.56
VPS13A-213ENST00000539950 TOMM22Q9NS69 142 aa5.28□□□□□ -1.56
VPS13A-213ENST00000539950 MAGEC2Q9UBF1 373 aaPredicted RBP5.28□□□□□ -1.56
VPS13A-213ENST00000539950 FAM83GA6ND36 823 aa5.27□□□□□ -1.57
VPS13A-213ENST00000539950 OVOL3O00110 214 aa5.27□□□□□ -1.57
VPS13A-213ENST00000539950 PRPF6O94906 941 aaKnown RBP5.27□□□□□ -1.57
VPS13A-213ENST00000539950 TGFB2P61812 414 aa5.27□□□□□ -1.57
VPS13A-213ENST00000539950 ELAVL1Q15717 326 aaKnown RBP5.27□□□□□ -1.57
VPS13A-213ENST00000539950 GAGE13Q4V321 117 aa5.27□□□□□ -1.57
VPS13A-213ENST00000539950 PHYKPLQ8IUZ5 450 aa5.27□□□□□ -1.57
VPS13A-213ENST00000539950 ANKRD35Q8N283 1001 aa5.27□□□□□ -1.57
VPS13A-213ENST00000539950 C7orf31Q8N865 590 aa5.27□□□□□ -1.57
VPS13A-213ENST00000539950 NEU4Q8WWR8 484 aaPredicted RBP5.27□□□□□ -1.57
VPS13A-213ENST00000539950 RNPC3Q96LT9 517 aaKnown RBP5.27□□□□□ -1.57
VPS13A-213ENST00000539950 ORAI3Q9BRQ5 295 aa5.27□□□□□ -1.57
VPS13A-213ENST00000539950 MYL10Q9BUA6 226 aa5.27□□□□□ -1.57
VPS13A-213ENST00000539950 SLC2A4RGQ9NR83 387 aa5.27□□□□□ -1.57
VPS13A-213ENST00000539950 INTS7Q9NVH2 962 aaKnown RBP5.27□□□□□ -1.57
VPS13A-213ENST00000539950 PARPBPQ9NWS1 579 aa5.27□□□□□ -1.57
VPS13A-213ENST00000539950 CD2APQ9Y5K6 639 aa5.27□□□□□ -1.57
VPS13A-213ENST00000539950 A0A0A6YYJ9 748 aa5.26□□□□□ -1.57
VPS13A-213ENST00000539950 A0A0A6YYK5 440 aaPredicted RBP5.26□□□□□ -1.57
VPS13A-213ENST00000539950 ZNF891A8MT65 544 aaPredicted RBP5.26□□□□□ -1.57
VPS13A-213ENST00000539950 KPNA6O60684 536 aa5.26□□□□□ -1.57
VPS13A-213ENST00000539950 OPHN1O60890 802 aa5.26□□□□□ -1.57
VPS13A-213ENST00000539950 VSIG10L2P0DP72 767 aa5.26□□□□□ -1.57
VPS13A-213ENST00000539950 SLC25A3Q00325 362 aa5.26□□□□□ -1.57
VPS13A-213ENST00000539950 ADCY1Q08828 1119 aa5.26□□□□□ -1.57
VPS13A-213ENST00000539950 KRT40Q6A162 431 aa5.26□□□□□ -1.57
VPS13A-213ENST00000539950 KIAA1841Q6NSI8 718 aa5.26□□□□□ -1.57
VPS13A-213ENST00000539950 NXPE1Q8N323 547 aa5.26□□□□□ -1.57
VPS13A-213ENST00000539950 AMER2Q8N7J2 671 aa5.26□□□□□ -1.57
VPS13A-213ENST00000539950 ZNF483Q8TF39 744 aaPredicted RBP5.26□□□□□ -1.57
VPS13A-213ENST00000539950 LARP4BQ92615 738 aaKnown RBP5.26□□□□□ -1.57
VPS13A-213ENST00000539950 CHFRQ96EP1 664 aa5.26□□□□□ -1.57
VPS13A-213ENST00000539950 TCF25Q9BQ70 676 aa5.26□□□□□ -1.57
VPS13A-213ENST00000539950 SOX7Q9BT81 388 aa5.26□□□□□ -1.57
VPS13A-213ENST00000539950 MTFR1LQ9H019 292 aa5.26□□□□□ -1.57
VPS13A-213ENST00000539950 ZMAT4Q9H898 229 aa5.26□□□□□ -1.57
VPS13A-213ENST00000539950 RCAN3Q9UKA8 241 aa5.26□□□□□ -1.57
VPS13A-213ENST00000539950 DAPK3O43293 454 aa5.25□□□□□ -1.57
VPS13A-213ENST00000539950 F2P00734 622 aa5.25□□□□□ -1.57
VPS13A-213ENST00000539950 RABGGTBP53611 331 aa5.25□□□□□ -1.57
VPS13A-213ENST00000539950 DSG1Q02413 1049 aa5.25□□□□□ -1.57
VPS13A-213ENST00000539950 TKFCQ3LXA3 575 aa5.25□□□□□ -1.57
VPS13A-213ENST00000539950 FKBP15Q5T1M5 1219 aa5.25□□□□□ -1.57
VPS13A-213ENST00000539950 TIGD7Q6NT04 549 aaPredicted RBP5.25□□□□□ -1.57
VPS13A-213ENST00000539950 ELOA2Q8IYF1 753 aaPredicted RBP5.25□□□□□ -1.57
VPS13A-213ENST00000539950 CHTF18Q8WVB6 975 aa5.25□□□□□ -1.57
VPS13A-213ENST00000539950 UBXN4Q92575 508 aa5.25□□□□□ -1.57
VPS13A-213ENST00000539950 DRC1Q96MC2 740 aa5.25□□□□□ -1.57
VPS13A-213ENST00000539950 IKZF4Q9H2S9 585 aa5.25□□□□□ -1.57
VPS13A-213ENST00000539950 C14orf93Q9H972 538 aaKnown RBP5.25□□□□□ -1.57
VPS13A-213ENST00000539950 NCDNQ9UBB6 729 aa5.25□□□□□ -1.57
VPS13A-213ENST00000539950 ZKSCAN5Q9Y2L8 839 aa5.25□□□□□ -1.57
VPS13A-213ENST00000539950 REXO2Q9Y3B8 237 aaKnown RBP5.25□□□□□ -1.57
VPS13A-213ENST00000539950 ELL2O00472 640 aaPredicted RBP5.24□□□□□ -1.57
VPS13A-213ENST00000539950 GAS7O60861 476 aa5.24□□□□□ -1.57
VPS13A-213ENST00000539950 JUNP05412 331 aaKnown RBP5.24□□□□□ -1.57
VPS13A-213ENST00000539950 POU3F2P20265 443 aaPredicted RBP5.24□□□□□ -1.57
VPS13A-213ENST00000539950 KIR2DL3P43628 341 aa5.24□□□□□ -1.57
VPS13A-213ENST00000539950 MAN2A2P49641 1150 aa5.24□□□□□ -1.57
VPS13A-213ENST00000539950 NEK4P51957 841 aa5.24□□□□□ -1.57
VPS13A-213ENST00000539950 DPTQ07507 201 aa5.24□□□□□ -1.57
VPS13A-213ENST00000539950 CNGB1Q14028 1251 aaPredicted RBP5.24□□□□□ -1.57
VPS13A-213ENST00000539950 TOB2Q14106 344 aaPredicted RBP5.24□□□□□ -1.57
VPS13A-213ENST00000539950 TCEA2Q15560 299 aa5.24□□□□□ -1.57
VPS13A-213ENST00000539950 ZNF627Q7L945 461 aa5.24□□□□□ -1.57
VPS13A-213ENST00000539950 LRRTM3Q86VH5 581 aa5.24□□□□□ -1.57
VPS13A-213ENST00000539950 KIF18BQ86Y91 864 aa5.24□□□□□ -1.57
VPS13A-213ENST00000539950 GSPT2Q8IYD1 628 aaKnown RBP5.24□□□□□ -1.57
VPS13A-213ENST00000539950 SYNPOQ8N3V7 929 aa5.24□□□□□ -1.57
VPS13A-213ENST00000539950 ZNF512Q96ME7 567 aaPredicted RBP5.24□□□□□ -1.57
VPS13A-213ENST00000539950 NOL10Q9BSC4 688 aaKnown RBP5.24□□□□□ -1.57
VPS13A-213ENST00000539950 GPR87Q9BY21 358 aa5.24□□□□□ -1.57
VPS13A-213ENST00000539950 IFT57Q9NWB7 429 aa5.24□□□□□ -1.57
VPS13A-213ENST00000539950 SYNPO2Q9UMS6 1093 aa5.24□□□□□ -1.57
VPS13A-213ENST00000539950 XDHP47989 1333 aa5.23□□□□□ -1.57
VPS13A-213ENST00000539950 KLRG2A4D1S0 409 aaPredicted RBP5.23□□□□□ -1.57
VPS13A-213ENST00000539950 TGM5O43548 720 aa5.23□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms