RNA–Protein interactions for RNA: ENST00000539372.5

TNFRSF1A-212, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 2

Gene TNFRSF1A, Length 1,063 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-212ENST00000539372 TMEM117Q9H0C3 514 aa21.33■■□□□ 1.01
TNFRSF1A-212ENST00000539372 CWH43Q9H720 699 aa21.33■■□□□ 1.01
TNFRSF1A-212ENST00000539372 ZSWIM4Q9H7M6 989 aa21.33■■□□□ 1.01
TNFRSF1A-212ENST00000539372 PCDHA12Q9UN75 941 aa21.33■■□□□ 1.01
TNFRSF1A-212ENST00000539372 PCDHGC5Q9Y5F6 944 aa21.33■■□□□ 1.01
TNFRSF1A-212ENST00000539372 HOXA2O43364 376 aa21.32■■□□□ 1
TNFRSF1A-212ENST00000539372 SFPQP23246 707 aaKnown RBP eCLIP21.32■■□□□ 1
TNFRSF1A-212ENST00000539372 TXKP42681 527 aa21.32■■□□□ 1
TNFRSF1A-212ENST00000539372 CLLU1OSQ5K130 101 aa21.32■■□□□ 1
TNFRSF1A-212ENST00000539372 LRRC55Q6ZSA7 311 aa21.32■■□□□ 1
TNFRSF1A-212ENST00000539372 THNSL1Q8IYQ7 743 aa21.32■■□□□ 1
TNFRSF1A-212ENST00000539372 ABI1Q8IZP0 508 aa21.32■■□□□ 1
TNFRSF1A-212ENST00000539372 EIF2AK1Q9BQI3 630 aaKnown RBP21.32■■□□□ 1
TNFRSF1A-212ENST00000539372 DHX33Q9H6R0 707 aaKnown RBP21.32■■□□□ 1
TNFRSF1A-212ENST00000539372 TTC12Q9H892 705 aaPredicted RBP21.32■■□□□ 1
TNFRSF1A-212ENST00000539372 DACT1Q9NYF0 836 aa21.32■■□□□ 1
TNFRSF1A-212ENST00000539372 COL4A3BPQ9Y5P4 624 aa21.32■■□□□ 1
TNFRSF1A-212ENST00000539372 A0A0U1RQF3 1178 aa21.31■■□□□ 1
TNFRSF1A-212ENST00000539372 GRXCR2A6NFK2 248 aa21.31■■□□□ 1
TNFRSF1A-212ENST00000539372 LINC01565O15544 149 aa21.31■■□□□ 1
TNFRSF1A-212ENST00000539372 NCK2O43639 380 aa21.31■■□□□ 1
TNFRSF1A-212ENST00000539372 FGF18O76093 207 aa21.31■■□□□ 1
TNFRSF1A-212ENST00000539372 SLITRK3O94933 977 aa21.31■■□□□ 1
TNFRSF1A-212ENST00000539372 LTBRP36941 435 aa21.31■■□□□ 1
TNFRSF1A-212ENST00000539372 RFC5P40937 340 aa21.31■■□□□ 1
TNFRSF1A-212ENST00000539372 DLX2Q07687 328 aaPredicted RBP21.31■■□□□ 1
TNFRSF1A-212ENST00000539372 SAFBQ15424 915 aaKnown RBP eCLIP21.31■■□□□ 1
TNFRSF1A-212ENST00000539372 CLUL1Q15846 466 aa21.31■■□□□ 1
TNFRSF1A-212ENST00000539372 CTC1Q2NKJ3 1217 aa21.31■■□□□ 1
TNFRSF1A-212ENST00000539372 XKR9Q5GH70 373 aa21.31■■□□□ 1
TNFRSF1A-212ENST00000539372 OTUD6AQ7L8S5 288 aa21.31■■□□□ 1
TNFRSF1A-212ENST00000539372 PRPF31Q8WWY3 499 aaKnown RBP21.31■■□□□ 1
TNFRSF1A-212ENST00000539372 C8orf76Q96K31 380 aa21.31■■□□□ 1
TNFRSF1A-212ENST00000539372 LLPHQ9BRT6 129 aaKnown RBP21.31■■□□□ 1
TNFRSF1A-212ENST00000539372 PIN4Q9Y237 131 aaKnown RBP21.31■■□□□ 1
TNFRSF1A-212ENST00000539372 SRGAP2CP0DJJ0 459 aa21.3■■□□□ 1
TNFRSF1A-212ENST00000539372 ATF7P17544 494 aaPredicted RBP21.3■■□□□ 1
TNFRSF1A-212ENST00000539372 LAG3P18627 525 aa21.3■■□□□ 1
TNFRSF1A-212ENST00000539372 MCM7P33993 719 aa21.3■■□□□ 1
TNFRSF1A-212ENST00000539372 PBX3P40426 434 aa21.3■■□□□ 1
TNFRSF1A-212ENST00000539372 EMC2Q15006 297 aa21.3■■□□□ 1
TNFRSF1A-212ENST00000539372 LONRF3Q496Y0 759 aa21.3■■□□□ 1
TNFRSF1A-212ENST00000539372 TWF2Q6IBS0 349 aaKnown RBP21.3■■□□□ 1
TNFRSF1A-212ENST00000539372 CATSPER4Q7RTX7 472 aa21.3■■□□□ 1
TNFRSF1A-212ENST00000539372 RBM23Q86U06 439 aaKnown RBP21.3■■□□□ 1
TNFRSF1A-212ENST00000539372 ZNF598Q86UK7 904 aaKnown RBP21.3■■□□□ 1
TNFRSF1A-212ENST00000539372 LRRC43Q8N309 656 aa21.3■■□□□ 1
TNFRSF1A-212ENST00000539372 HELQQ8TDG4 1101 aa21.3■■□□□ 1
TNFRSF1A-212ENST00000539372 MICAL1Q8TDZ2 1067 aa21.3■■□□□ 1
TNFRSF1A-212ENST00000539372 PSPC1Q8WXF1 523 aaKnown RBP21.3■■□□□ 1
TNFRSF1A-212ENST00000539372 MTMR9Q96QG7 549 aa21.3■■□□□ 1
TNFRSF1A-212ENST00000539372 INO80BQ9C086 356 aaPredicted RBP21.3■■□□□ 1
TNFRSF1A-212ENST00000539372 TMEM60Q9H2L4 133 aa21.3■■□□□ 1
TNFRSF1A-212ENST00000539372 IFT122Q9HBG6 1241 aa21.3■■□□□ 1
TNFRSF1A-212ENST00000539372 CD320Q9NPF0 282 aa21.3■■□□□ 1
TNFRSF1A-212ENST00000539372 CHST12Q9NRB3 414 aa21.3■■□□□ 1
TNFRSF1A-212ENST00000539372 PPME1Q9Y570 386 aa21.3■■□□□ 1
TNFRSF1A-212ENST00000539372 NCOR1O75376 2440 aa21.3■■□□□ 1
TNFRSF1A-212ENST00000539372 PLXNA4Q9HCM2 1894 aa21.29■■□□□ 1
TNFRSF1A-212ENST00000539372 EOMESO95936 686 aa21.29■■□□□ 1
TNFRSF1A-212ENST00000539372 LAMTOR4Q0VGL1 99 aa21.29■■□□□ 1
TNFRSF1A-212ENST00000539372 PUS10Q3MIT2 529 aaKnown RBP21.29■■□□□ 1
TNFRSF1A-212ENST00000539372 EXOC8Q8IYI6 725 aa21.29■■□□□ 1
TNFRSF1A-212ENST00000539372 PPP2R3CQ969Q6 453 aa21.29■■□□□ 1
TNFRSF1A-212ENST00000539372 ZSCAN31Q96LW9 406 aaPredicted RBP21.29■■□□□ 1
TNFRSF1A-212ENST00000539372 HSD17B14Q9BPX1 270 aa21.29■■□□□ 1
TNFRSF1A-212ENST00000539372 A0A087WWV3 80 aa21.28■■□□□ 1
TNFRSF1A-212ENST00000539372 TBX10O75333 385 aa21.28■■□□□ 1
TNFRSF1A-212ENST00000539372 PHKA2P46019 1235 aa21.28■■□□□ 1
TNFRSF1A-212ENST00000539372 NRIP1P48552 1158 aa21.28■■□□□ 1
TNFRSF1A-212ENST00000539372 UBE3AQ05086 875 aa21.28■■□□□ 1
TNFRSF1A-212ENST00000539372 CSPP1Q1MSJ5 1256 aa21.28■■□□□ 1
TNFRSF1A-212ENST00000539372 FAM178BQ8IXR5 827 aa21.28■■□□□ 1
TNFRSF1A-212ENST00000539372 LPPQ93052 612 aa21.28■■□□□ 1
TNFRSF1A-212ENST00000539372 MTRQ99707 1265 aa21.28■■□□□ 1
TNFRSF1A-212ENST00000539372 TLR9Q9NR96 1032 aa21.28■■□□□ 1
TNFRSF1A-212ENST00000539372 SH2B1Q9NRF2 756 aaPredicted RBP21.28■■□□□ 1
TNFRSF1A-212ENST00000539372 BDP1A6H8Y1 2624 aa21.27■■□□□ 1
TNFRSF1A-212ENST00000539372 POTEMA6NI47 508 aa21.27■■□□□ 1
TNFRSF1A-212ENST00000539372 ERVFC1P60507 584 aa21.27■■□□□ 1
TNFRSF1A-212ENST00000539372 ADAM15Q13444 863 aa21.27■■□□□ 1
TNFRSF1A-212ENST00000539372 KCNT2Q6UVM3 1135 aa21.27■■□□□ 1
TNFRSF1A-212ENST00000539372 FERMT3Q86UX7 667 aa21.27■■□□□ 1
TNFRSF1A-212ENST00000539372 FAM184AQ8NB25 1140 aa21.27■■□□□ 1
TNFRSF1A-212ENST00000539372 TCP11Q8WWU5 503 aa21.27■■□□□ 1
TNFRSF1A-212ENST00000539372 ZNF558Q96NG5 402 aa21.27■■□□□ 1
TNFRSF1A-212ENST00000539372 MINDY3Q9H8M7 445 aa21.27■■□□□ 1
TNFRSF1A-212ENST00000539372 FAM105AQ9NUU6 356 aa21.27■■□□□ 1
TNFRSF1A-212ENST00000539372 PER2O15055 1255 aa21.26■□□□□ 0.99
TNFRSF1A-212ENST00000539372 GAS2O43903 313 aaKnown RBP21.26■□□□□ 0.99
TNFRSF1A-212ENST00000539372 LYPLA2O95372 231 aa21.26■□□□□ 0.99
TNFRSF1A-212ENST00000539372 SSTR3P32745 418 aaPredicted RBP21.26■□□□□ 0.99
TNFRSF1A-212ENST00000539372 NDUFV1P49821 464 aa21.26■□□□□ 0.99
TNFRSF1A-212ENST00000539372 HMGN5P82970 282 aaKnown RBP21.26■□□□□ 0.99
TNFRSF1A-212ENST00000539372 ZNF174Q15697 407 aa21.26■□□□□ 0.99
TNFRSF1A-212ENST00000539372 SRGAP1Q7Z6B7 1085 aa21.26■□□□□ 0.99
TNFRSF1A-212ENST00000539372 RNF149Q8NC42 400 aa21.26■□□□□ 0.99
TNFRSF1A-212ENST00000539372 KHSRPQ92945 711 aaKnown RBP eCLIP21.26■□□□□ 0.99
TNFRSF1A-212ENST00000539372 TRAIPQ9BWF2 469 aa21.26■□□□□ 0.99
TNFRSF1A-212ENST00000539372 EPHX3Q9H6B9 360 aa21.26■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms