RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 TEKT3Q9BXF9 490 aa15.3■□□□□ 0.04
SS18-204ENST00000539244 ADAM7Q9H2U9 754 aa15.3■□□□□ 0.04
SS18-204ENST00000539244 UNC45AQ9H3U1 944 aa15.3■□□□□ 0.04
SS18-204ENST00000539244 MYO10Q9HD67 2058 aa15.3■□□□□ 0.04
SS18-204ENST00000539244 NR2E1Q9Y466 385 aa15.3■□□□□ 0.04
SS18-204ENST00000539244 SNX14Q9Y5W7 946 aa15.3■□□□□ 0.04
SS18-204ENST00000539244 IRAK3Q9Y616 596 aa15.3■□□□□ 0.04
SS18-204ENST00000539244 CYP3A7-CYP3A51PA0A087WV96 503 aa15.29■□□□□ 0.04
SS18-204ENST00000539244 STBD1O95210 358 aa15.29■□□□□ 0.04
SS18-204ENST00000539244 FGFR4P22455 802 aa15.29■□□□□ 0.04
SS18-204ENST00000539244 RPS6KB1P23443 525 aa15.29■□□□□ 0.04
SS18-204ENST00000539244 CYP3A7P24462 503 aa15.29■□□□□ 0.04
SS18-204ENST00000539244 AVPR2P30518 371 aa15.29■□□□□ 0.04
SS18-204ENST00000539244 ALDH7A1P49419 539 aaKnown RBP15.29■□□□□ 0.04
SS18-204ENST00000539244 NUBP1P53384 320 aa15.29■□□□□ 0.04
SS18-204ENST00000539244 VCPP55072 806 aaKnown RBP15.29■□□□□ 0.04
SS18-204ENST00000539244 BCAR1P56945 870 aa15.29■□□□□ 0.04
SS18-204ENST00000539244 DRP2Q13474 957 aa15.29■□□□□ 0.04
SS18-204ENST00000539244 XKR3Q5GH77 459 aa15.29■□□□□ 0.04
SS18-204ENST00000539244 CES5AQ6NT32 575 aa15.29■□□□□ 0.04
SS18-204ENST00000539244 RNF169Q8NCN4 708 aa15.29■□□□□ 0.04
SS18-204ENST00000539244 NLRP7Q8WX94 980 aa15.29■□□□□ 0.04
SS18-204ENST00000539244 RIPOR3Q96MK2 946 aa15.29■□□□□ 0.04
SS18-204ENST00000539244 SCLT1Q96NL6 688 aa15.29■□□□□ 0.04
SS18-204ENST00000539244 APOL5Q9BWW9 433 aa15.29■□□□□ 0.04
SS18-204ENST00000539244 SLC26A6Q9BXS9 759 aa15.29■□□□□ 0.04
SS18-204ENST00000539244 GCOM2Q9BZD3 368 aaPredicted RBP15.29■□□□□ 0.04
SS18-204ENST00000539244 C22orf23Q9BZE7 217 aa15.29■□□□□ 0.04
SS18-204ENST00000539244 VPS54Q9P1Q0 977 aa15.29■□□□□ 0.04
SS18-204ENST00000539244 CHMP2AO43633 222 aa15.28■□□□□ 0.04
SS18-204ENST00000539244 CLASP2O75122 1294 aaKnown RBP15.28■□□□□ 0.04
SS18-204ENST00000539244 PHKA2P46019 1235 aa15.28■□□□□ 0.04
SS18-204ENST00000539244 GIT2Q14161 759 aa15.28■□□□□ 0.04
SS18-204ENST00000539244 BMS1Q14692 1282 aaKnown RBP15.28■□□□□ 0.04
SS18-204ENST00000539244 ZNF410Q86VK4 478 aa15.28■□□□□ 0.04
SS18-204ENST00000539244 UBALD2Q8IYN6 164 aa15.28■□□□□ 0.04
SS18-204ENST00000539244 TBCKQ8TEA7 893 aa15.28■□□□□ 0.04
SS18-204ENST00000539244 TMEM169Q96HH4 297 aa15.28■□□□□ 0.04
SS18-204ENST00000539244 ZBP1Q9H171 429 aa15.28■□□□□ 0.04
SS18-204ENST00000539244 IRF2BPLQ9H1B7 796 aa15.28■□□□□ 0.04
SS18-204ENST00000539244 POMKQ9H5K3 350 aa15.28■□□□□ 0.04
SS18-204ENST00000539244 CDH22Q9UJ99 828 aa15.28■□□□□ 0.04
SS18-204ENST00000539244 SORCS3Q9UPU3 1222 aa15.28■□□□□ 0.04
SS18-204ENST00000539244 C2CD4DB7Z1M9 353 aa15.27■□□□□ 0.04
SS18-204ENST00000539244 M0R2N6 131 aa15.27■□□□□ 0.04
SS18-204ENST00000539244 ZNF623O75123 536 aa15.27■□□□□ 0.04
SS18-204ENST00000539244 CSDE1O75534 798 aaKnown RBP15.27■□□□□ 0.04
SS18-204ENST00000539244 SKIP12755 728 aa15.27■□□□□ 0.04
SS18-204ENST00000539244 SFPQP23246 707 aaKnown RBP eCLIP15.27■□□□□ 0.04
SS18-204ENST00000539244 PDIA3P30101 505 aaKnown RBP15.27■□□□□ 0.04
SS18-204ENST00000539244 MTHFRP42898 656 aa15.27■□□□□ 0.04
SS18-204ENST00000539244 POLGP54098 1239 aaPredicted RBP15.27■□□□□ 0.04
SS18-204ENST00000539244 MOXD1Q6UVY6 613 aa15.27■□□□□ 0.04
SS18-204ENST00000539244 MIER3Q7Z3K6 550 aa15.27■□□□□ 0.04
SS18-204ENST00000539244 TMEM173Q86WV6 379 aaPredicted RBP15.27■□□□□ 0.04
SS18-204ENST00000539244 FAM177A1Q8N128 213 aaPredicted RBP15.27■□□□□ 0.04
SS18-204ENST00000539244 VPS52Q8N1B4 723 aa15.27■□□□□ 0.04
SS18-204ENST00000539244 KREMEN2Q8NCW0 462 aa15.27■□□□□ 0.04
SS18-204ENST00000539244 GJA10Q969M2 543 aa15.27■□□□□ 0.04
SS18-204ENST00000539244 MBOAT7Q96N66 472 aa15.27■□□□□ 0.04
SS18-204ENST00000539244 INO80BQ9C086 356 aaPredicted RBP15.27■□□□□ 0.04
SS18-204ENST00000539244 SEPT9Q9UHD8 586 aaPredicted RBP15.27■□□□□ 0.04
SS18-204ENST00000539244 A0A087WZ62 844 aa15.26■□□□□ 0.03
SS18-204ENST00000539244 NT5C1B-RDH14C9J2C7 533 aa15.26■□□□□ 0.03
SS18-204ENST00000539244 ST18O60284 1047 aa15.26■□□□□ 0.03
SS18-204ENST00000539244 MAFO75444 373 aaPredicted RBP15.26■□□□□ 0.03
SS18-204ENST00000539244 CXCL14O95715 111 aa15.26■□□□□ 0.03
SS18-204ENST00000539244 CTSAP10619 480 aa15.26■□□□□ 0.03
SS18-204ENST00000539244 SP100P23497 879 aaPredicted RBP15.26■□□□□ 0.03
SS18-204ENST00000539244 PSMA5P28066 241 aa15.26■□□□□ 0.03
SS18-204ENST00000539244 DNM2P50570 870 aa15.26■□□□□ 0.03
SS18-204ENST00000539244 RAB27AP51159 221 aa15.26■□□□□ 0.03
SS18-204ENST00000539244 NLRP5P59047 1200 aa15.26■□□□□ 0.03
SS18-204ENST00000539244 MTMR3Q13615 1198 aa15.26■□□□□ 0.03
SS18-204ENST00000539244 MTERF2Q49AM1 385 aa15.26■□□□□ 0.03
SS18-204ENST00000539244 KIAA1841Q6NSI8 718 aa15.26■□□□□ 0.03
SS18-204ENST00000539244 ZBTB33Q86T24 672 aa15.26■□□□□ 0.03
SS18-204ENST00000539244 DDX53Q86TM3 631 aaKnown RBP15.26■□□□□ 0.03
SS18-204ENST00000539244 DAGLBQ8NCG7 672 aa15.26■□□□□ 0.03
SS18-204ENST00000539244 ETNPPLQ8TBG4 499 aa15.26■□□□□ 0.03
SS18-204ENST00000539244 IGSF21Q96ID5 467 aa15.26■□□□□ 0.03
SS18-204ENST00000539244 FDXACB1Q9BRP7 624 aaPredicted RBP15.26■□□□□ 0.03
SS18-204ENST00000539244 FAM105AQ9NUU6 356 aa15.26■□□□□ 0.03
SS18-204ENST00000539244 TBC1D13Q9NVG8 400 aa15.26■□□□□ 0.03
SS18-204ENST00000539244 DZANK1Q9NVP4 752 aa15.26■□□□□ 0.03
SS18-204ENST00000539244 PCDHA4Q9UN74 947 aa15.26■□□□□ 0.03
SS18-204ENST00000539244 USTQ9Y2C2 406 aa15.26■□□□□ 0.03
SS18-204ENST00000539244 DENND4AQ7Z401 1863 aa15.26■□□□□ 0.03
SS18-204ENST00000539244 ZC3H11AO75152 810 aaKnown RBP eCLIP15.25■□□□□ 0.03
SS18-204ENST00000539244 TDP2O95551 362 aa15.25■□□□□ 0.03
SS18-204ENST00000539244 BRD1O95696 1058 aa15.25■□□□□ 0.03
SS18-204ENST00000539244 PDGFBP01127 241 aaPredicted RBP15.25■□□□□ 0.03
SS18-204ENST00000539244 GALTP07902 379 aa15.25■□□□□ 0.03
SS18-204ENST00000539244 CCT2P78371 535 aaKnown RBP15.25■□□□□ 0.03
SS18-204ENST00000539244 NPY5RQ15761 445 aa15.25■□□□□ 0.03
SS18-204ENST00000539244 TWF2Q6IBS0 349 aaKnown RBP15.25■□□□□ 0.03
SS18-204ENST00000539244 GLB1LQ6UWU2 654 aa15.25■□□□□ 0.03
SS18-204ENST00000539244 ZDHHC14Q8IZN3 488 aa15.25■□□□□ 0.03
SS18-204ENST00000539244 SLC22A17Q8WUG5 538 aa15.25■□□□□ 0.03
SS18-204ENST00000539244 NRDE2Q9H7Z3 1164 aa15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms