RNA–Protein interactions for RNA: ENST00000538120.5

CLIP1-210, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 3

Gene CLIP1, Length 2,472 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-210ENST00000538120 GANQ9H2C0 597 aa11.75□□□□□ -0.53
CLIP1-210ENST00000538120 A1CFQ9NQ94 594 aaKnown RBP11.75□□□□□ -0.53
CLIP1-210ENST00000538120 CEP72Q9P209 647 aa11.75□□□□□ -0.53
CLIP1-210ENST00000538120 ARMCX3Q9UH62 379 aaPredicted RBP11.75□□□□□ -0.53
CLIP1-210ENST00000538120 SAMM50Q9Y512 469 aa11.75□□□□□ -0.53
CLIP1-210ENST00000538120 PPME1Q9Y570 386 aa11.75□□□□□ -0.53
CLIP1-210ENST00000538120 TLR2O60603 784 aa11.75□□□□□ -0.53
CLIP1-210ENST00000538120 KRT83P78385 493 aa11.75□□□□□ -0.53
CLIP1-210ENST00000538120 AMPD2Q01433 879 aa11.75□□□□□ -0.53
CLIP1-210ENST00000538120 CYP27A1Q02318 531 aa11.75□□□□□ -0.53
CLIP1-210ENST00000538120 ASTE1Q2TB18 679 aaPredicted RBP11.75□□□□□ -0.53
CLIP1-210ENST00000538120 SRLQ86TD4 932 aa11.75□□□□□ -0.53
CLIP1-210ENST00000538120 FAM178BQ8IXR5 827 aa11.75□□□□□ -0.53
CLIP1-210ENST00000538120 GPRASP2Q96D09 838 aa11.75□□□□□ -0.53
CLIP1-210ENST00000538120 HAUS4Q9H6D7 363 aa11.75□□□□□ -0.53
CLIP1-210ENST00000538120 NLRC4Q9NPP4 1024 aa11.75□□□□□ -0.53
CLIP1-210ENST00000538120 DMAC2Q9NW81 257 aa11.75□□□□□ -0.53
CLIP1-210ENST00000538120 HOXC10Q9NYD6 342 aa11.75□□□□□ -0.53
CLIP1-210ENST00000538120 RNF181Q9P0P0 153 aa11.75□□□□□ -0.53
CLIP1-210ENST00000538120 MYO1AQ9UBC5 1043 aa11.75□□□□□ -0.53
CLIP1-210ENST00000538120 TELO2Q9Y4R8 837 aa11.75□□□□□ -0.53
CLIP1-210ENST00000538120 UBE4BO95155 1302 aa11.74□□□□□ -0.53
CLIP1-210ENST00000538120 MYPNQ86TC9 1320 aa11.74□□□□□ -0.53
CLIP1-210ENST00000538120 PEX10O60683 326 aa11.74□□□□□ -0.53
CLIP1-210ENST00000538120 SRGAP2O75044 1071 aa11.74□□□□□ -0.53
CLIP1-210ENST00000538120 ERLIN1O75477 346 aa11.74□□□□□ -0.53
CLIP1-210ENST00000538120 LCA5LO95447 670 aa11.74□□□□□ -0.53
CLIP1-210ENST00000538120 RPL13P26373 211 aaKnown RBP11.74□□□□□ -0.53
CLIP1-210ENST00000538120 YWHABP31946 246 aaKnown RBP11.74□□□□□ -0.53
CLIP1-210ENST00000538120 EIF4A3P38919 411 aaKnown RBP11.74□□□□□ -0.53
CLIP1-210ENST00000538120 MAEAQ7L5Y9 396 aa11.74□□□□□ -0.53
CLIP1-210ENST00000538120 C4orf19Q8IY42 314 aa11.74□□□□□ -0.53
CLIP1-210ENST00000538120 CCDC42Q96M95 316 aa11.74□□□□□ -0.53
CLIP1-210ENST00000538120 SENP7Q9BQF6 1050 aa11.74□□□□□ -0.53
CLIP1-210ENST00000538120 SH2D3AQ9BRG2 576 aa11.74□□□□□ -0.53
CLIP1-210ENST00000538120 PLEKHA4Q9H4M7 779 aa11.74□□□□□ -0.53
CLIP1-210ENST00000538120 ACAD9Q9H845 621 aa11.74□□□□□ -0.53
CLIP1-210ENST00000538120 GUCA1BQ9UMX6 200 aa11.74□□□□□ -0.53
CLIP1-210ENST00000538120 RRP15Q9Y3B9 282 aaKnown RBP11.74□□□□□ -0.53
CLIP1-210ENST00000538120 POLR2AP24928 1970 aaKnown RBP11.74□□□□□ -0.53
CLIP1-210ENST00000538120 WDR64B1ANS9 1081 aa11.74□□□□□ -0.53
CLIP1-210ENST00000538120 BACH1O14867 736 aa11.74□□□□□ -0.53
CLIP1-210ENST00000538120 AFPP02771 609 aaKnown RBP11.74□□□□□ -0.53
CLIP1-210ENST00000538120 KCNA2P16389 499 aa11.74□□□□□ -0.53
CLIP1-210ENST00000538120 YBX3P16989 372 aaKnown RBP eCLIP11.74□□□□□ -0.53
CLIP1-210ENST00000538120 JAK3P52333 1124 aa11.74□□□□□ -0.53
CLIP1-210ENST00000538120 POLR2FP61218 127 aaKnown RBP11.74□□□□□ -0.53
CLIP1-210ENST00000538120 KRT76Q01546 638 aa11.74□□□□□ -0.53
CLIP1-210ENST00000538120 RBM46Q8TBY0 533 aaKnown RBP11.74□□□□□ -0.53
CLIP1-210ENST00000538120 NSUN6Q8TEA1 469 aaKnown RBP11.74□□□□□ -0.53
CLIP1-210ENST00000538120 SLC35C1Q96A29 364 aa11.74□□□□□ -0.53
CLIP1-210ENST00000538120 JAKMIP2Q96AA8 810 aa11.74□□□□□ -0.53
CLIP1-210ENST00000538120 GDAP1L1Q96MZ0 367 aa11.74□□□□□ -0.53
CLIP1-210ENST00000538120 METTL14Q9HCE5 456 aaKnown RBP11.74□□□□□ -0.53
CLIP1-210ENST00000538120 AGPAT3Q9NRZ7 376 aa11.74□□□□□ -0.53
CLIP1-210ENST00000538120 MYO6Q9UM54 1294 aa11.74□□□□□ -0.53
CLIP1-210ENST00000538120 WDR90Q96KV7 1748 aa11.73□□□□□ -0.53
CLIP1-210ENST00000538120 PAPPA2Q9BXP8 1791 aa11.73□□□□□ -0.53
CLIP1-210ENST00000538120 ANKRD65E5RJM6 399 aa11.73□□□□□ -0.53
CLIP1-210ENST00000538120 STBD1O95210 358 aa11.73□□□□□ -0.53
CLIP1-210ENST00000538120 ACTN1P12814 892 aa11.73□□□□□ -0.53
CLIP1-210ENST00000538120 SLC9A1P19634 815 aa11.73□□□□□ -0.53
CLIP1-210ENST00000538120 SFNP31947 248 aa11.73□□□□□ -0.53
CLIP1-210ENST00000538120 PSMC5P62195 406 aa11.73□□□□□ -0.53
CLIP1-210ENST00000538120 CCDC122Q5T0U0 273 aa11.73□□□□□ -0.53
CLIP1-210ENST00000538120 CACNA2D4Q7Z3S7 1137 aa11.73□□□□□ -0.53
CLIP1-210ENST00000538120 SYN2Q92777 582 aaPredicted RBP11.73□□□□□ -0.53
CLIP1-210ENST00000538120 MOV10L1Q9BXT6 1211 aaKnown RBP11.73□□□□□ -0.53
CLIP1-210ENST00000538120 RASSF4Q9H2L5 321 aa11.73□□□□□ -0.53
CLIP1-210ENST00000538120 DUSP10Q9Y6W6 482 aa11.73□□□□□ -0.53
CLIP1-210ENST00000538120 ZMYND10O75800 440 aa11.72□□□□□ -0.53
CLIP1-210ENST00000538120 MAPTP10636 758 aaKnown RBP11.72□□□□□ -0.53
CLIP1-210ENST00000538120 EPB41P11171 864 aaKnown RBP11.72□□□□□ -0.53
CLIP1-210ENST00000538120 XRCC5P13010 732 aaKnown RBP11.72□□□□□ -0.53
CLIP1-210ENST00000538120 PON1P27169 355 aa11.72□□□□□ -0.53
CLIP1-210ENST00000538120 KIF11P52732 1056 aa11.72□□□□□ -0.53
CLIP1-210ENST00000538120 VAV2P52735 878 aa11.72□□□□□ -0.53
CLIP1-210ENST00000538120 PLS1Q14651 629 aa11.72□□□□□ -0.53
CLIP1-210ENST00000538120 WHAMMP3Q1A5X7 153 aa11.72□□□□□ -0.53
CLIP1-210ENST00000538120 ZNF746Q6NUN9 644 aaPredicted RBP11.72□□□□□ -0.53
CLIP1-210ENST00000538120 NLRX1Q86UT6 975 aa11.72□□□□□ -0.53
CLIP1-210ENST00000538120 DCPSQ96C86 337 aaKnown RBP11.72□□□□□ -0.53
CLIP1-210ENST00000538120 CWC15Q9P013 229 aaKnown RBP11.72□□□□□ -0.53
CLIP1-210ENST00000538120 BTBD7Q9P203 1132 aa11.72□□□□□ -0.53
CLIP1-210ENST00000538120 RSPH14Q9UHP6 348 aa11.72□□□□□ -0.53
CLIP1-210ENST00000538120 TPD52L2O43399 206 aaKnown RBP11.72□□□□□ -0.53
CLIP1-210ENST00000538120 USO1O60763 962 aaKnown RBP11.72□□□□□ -0.53
CLIP1-210ENST00000538120 EIF3JO75822 258 aaKnown RBP11.72□□□□□ -0.53
CLIP1-210ENST00000538120 PSMC2P35998 433 aaKnown RBP11.72□□□□□ -0.53
CLIP1-210ENST00000538120 NPEPPSP55786 919 aa11.72□□□□□ -0.53
CLIP1-210ENST00000538120 FSTL1Q12841 308 aa11.72□□□□□ -0.53
CLIP1-210ENST00000538120 PLA2G4FQ68DD2 849 aa11.72□□□□□ -0.53
CLIP1-210ENST00000538120 LBX2Q6XYB7 198 aa11.72□□□□□ -0.53
CLIP1-210ENST00000538120 LEKR1Q6ZMV7 388 aa11.72□□□□□ -0.53
CLIP1-210ENST00000538120 KIAA1328Q86T90 577 aa11.72□□□□□ -0.53
CLIP1-210ENST00000538120 RDM1Q8NG50 284 aa11.72□□□□□ -0.53
CLIP1-210ENST00000538120 SYT17Q9BSW7 474 aa11.72□□□□□ -0.53
CLIP1-210ENST00000538120 MAF1Q9H063 256 aa11.72□□□□□ -0.53
CLIP1-210ENST00000538120 GBP3Q9H0R5 595 aa11.72□□□□□ -0.53
CLIP1-210ENST00000538120 SIX2Q9NPC8 291 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms