RNA–Protein interactions for RNA: ENST00000535997.6

CHMP1A-202, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2 BASIC

Gene CHMP1A, Length 2,295 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-202ENST00000535997 ARHGEF35A5YM69 484 aa17.4■□□□□ 0.38
CHMP1A-202ENST00000535997 NR1D1P20393 614 aa17.4■□□□□ 0.38
CHMP1A-202ENST00000535997 UBXN2AP68543 259 aa17.4■□□□□ 0.38
CHMP1A-202ENST00000535997 PPP2R5EQ16537 467 aa17.4■□□□□ 0.38
CHMP1A-202ENST00000535997 FAM160B2Q86V87 743 aa17.4■□□□□ 0.38
CHMP1A-202ENST00000535997 SUPT20HQ8NEM7 779 aa17.4■□□□□ 0.38
CHMP1A-202ENST00000535997 FAM151AQ8WW52 585 aa17.4■□□□□ 0.38
CHMP1A-202ENST00000535997 PPM1EQ8WY54 764 aa17.4■□□□□ 0.38
CHMP1A-202ENST00000535997 VTI1AQ96AJ9 217 aa17.4■□□□□ 0.38
CHMP1A-202ENST00000535997 AMACRQ9UHK6 382 aa17.4■□□□□ 0.38
CHMP1A-202ENST00000535997 ZBTB21Q9ULJ3 1066 aa17.4■□□□□ 0.38
CHMP1A-202ENST00000535997 ANKRD62A6NC57 917 aa17.39■□□□□ 0.37
CHMP1A-202ENST00000535997 TCP10L2B9ZVM9 353 aa17.39■□□□□ 0.37
CHMP1A-202ENST00000535997 BCRP11274 1271 aa17.39■□□□□ 0.37
CHMP1A-202ENST00000535997 MYL7Q01449 175 aa17.39■□□□□ 0.37
CHMP1A-202ENST00000535997 CEP85LQ5SZL2 805 aa17.39■□□□□ 0.37
CHMP1A-202ENST00000535997 TTC19Q6DKK2 380 aaPredicted RBP17.39■□□□□ 0.37
CHMP1A-202ENST00000535997 RNPC3Q96LT9 517 aaKnown RBP17.39■□□□□ 0.37
CHMP1A-202ENST00000535997 NAP1L3Q99457 506 aaPredicted RBP17.39■□□□□ 0.37
CHMP1A-202ENST00000535997 MXRA8Q9BRK3 442 aa17.39■□□□□ 0.37
CHMP1A-202ENST00000535997 VCPKMTQ9H867 229 aa17.39■□□□□ 0.37
CHMP1A-202ENST00000535997 TMBIM4Q9HC24 238 aa17.39■□□□□ 0.37
CHMP1A-202ENST00000535997 PPP1R9AQ9ULJ8 1098 aa17.39■□□□□ 0.37
CHMP1A-202ENST00000535997 SPDYE2BA6NHP3 402 aa17.38■□□□□ 0.37
CHMP1A-202ENST00000535997 H0YGN5 161 aa17.38■□□□□ 0.37
CHMP1A-202ENST00000535997 HIP1RO75146 1068 aa17.38■□□□□ 0.37
CHMP1A-202ENST00000535997 MYZAPP0CAP1 466 aa17.38■□□□□ 0.37
CHMP1A-202ENST00000535997 SPDYE6P0CI01 402 aa17.38■□□□□ 0.37
CHMP1A-202ENST00000535997 TRIM49P0CI25 452 aa17.38■□□□□ 0.37
CHMP1A-202ENST00000535997 TRIM49CP0CI26 452 aa17.38■□□□□ 0.37
CHMP1A-202ENST00000535997 MAPTP10636 758 aaKnown RBP17.38■□□□□ 0.37
CHMP1A-202ENST00000535997 ITGA4P13612 1032 aa17.38■□□□□ 0.37
CHMP1A-202ENST00000535997 ATP1A2P50993 1020 aa17.38■□□□□ 0.37
CHMP1A-202ENST00000535997 CETN1Q12798 172 aa17.38■□□□□ 0.37
CHMP1A-202ENST00000535997 PDCLQ13371 301 aa17.38■□□□□ 0.37
CHMP1A-202ENST00000535997 PLS1Q14651 629 aa17.38■□□□□ 0.37
CHMP1A-202ENST00000535997 KIF22Q14807 665 aa17.38■□□□□ 0.37
CHMP1A-202ENST00000535997 CLUL1Q15846 466 aa17.38■□□□□ 0.37
CHMP1A-202ENST00000535997 PHLDB3Q6NSJ2 640 aa17.38■□□□□ 0.37
CHMP1A-202ENST00000535997 DDX42Q86XP3 938 aaKnown RBP eCLIP17.38■□□□□ 0.37
CHMP1A-202ENST00000535997 LMO3Q8TAP4 145 aa17.38■□□□□ 0.37
CHMP1A-202ENST00000535997 CARD9Q9H257 536 aa17.38■□□□□ 0.37
CHMP1A-202ENST00000535997 TMEM206Q9H813 350 aa17.38■□□□□ 0.37
CHMP1A-202ENST00000535997 LARSQ9P2J5 1176 aaKnown RBP17.38■□□□□ 0.37
CHMP1A-202ENST00000535997 UTP11Q9Y3A2 253 aaKnown RBP17.38■□□□□ 0.37
CHMP1A-202ENST00000535997 NFS1Q9Y697 457 aa17.38■□□□□ 0.37
CHMP1A-202ENST00000535997 MYH11P35749 1972 aa17.38■□□□□ 0.37
CHMP1A-202ENST00000535997 A0A087WUV0 522 aaPredicted RBP17.38■□□□□ 0.37
CHMP1A-202ENST00000535997 FGGP02679 453 aa17.38■□□□□ 0.37
CHMP1A-202ENST00000535997 KRT13P13646 458 aa17.38■□□□□ 0.37
CHMP1A-202ENST00000535997 MAPK7Q13164 816 aa17.38■□□□□ 0.37
CHMP1A-202ENST00000535997 ITGB3BPQ13352 177 aaPredicted RBP17.38■□□□□ 0.37
CHMP1A-202ENST00000535997 MTMR3Q13615 1198 aa17.38■□□□□ 0.37
CHMP1A-202ENST00000535997 ALCAMQ13740 583 aa17.38■□□□□ 0.37
CHMP1A-202ENST00000535997 MSL1Q68DK7 614 aa17.38■□□□□ 0.37
CHMP1A-202ENST00000535997 PADI6Q6TGC4 694 aa17.38■□□□□ 0.37
CHMP1A-202ENST00000535997 INTS8Q75QN2 995 aaKnown RBP17.38■□□□□ 0.37
CHMP1A-202ENST00000535997 B4GALNT4Q76KP1 1039 aa17.38■□□□□ 0.37
CHMP1A-202ENST00000535997 LDHDQ86WU2 507 aa17.38■□□□□ 0.37
CHMP1A-202ENST00000535997 DAW1Q8N136 415 aa17.38■□□□□ 0.37
CHMP1A-202ENST00000535997 FAM114A2Q9NRY5 505 aa17.38■□□□□ 0.37
CHMP1A-202ENST00000535997 FEM1BQ9UK73 627 aa17.38■□□□□ 0.37
CHMP1A-202ENST00000535997 BRWD3Q6RI45 1802 aa17.38■□□□□ 0.37
CHMP1A-202ENST00000535997 YDJCA8MPS7 323 aa17.37■□□□□ 0.37
CHMP1A-202ENST00000535997 FOXN3O00409 490 aaPredicted RBP17.37■□□□□ 0.37
CHMP1A-202ENST00000535997 NDUFAB1O14561 156 aa17.37■□□□□ 0.37
CHMP1A-202ENST00000535997 P4HA2O15460 535 aa17.37■□□□□ 0.37
CHMP1A-202ENST00000535997 ABCB4P21439 1286 aa17.37■□□□□ 0.37
CHMP1A-202ENST00000535997 LSP1P33241 339 aa17.37■□□□□ 0.37
CHMP1A-202ENST00000535997 POU5F1Q01860 360 aaKnown RBP17.37■□□□□ 0.37
CHMP1A-202ENST00000535997 RUFY4Q6ZNE9 571 aa17.37■□□□□ 0.37
CHMP1A-202ENST00000535997 ARFGAP2Q8N6H7 521 aa17.37■□□□□ 0.37
CHMP1A-202ENST00000535997 HOOK2Q96ED9 719 aa17.37■□□□□ 0.37
CHMP1A-202ENST00000535997 EPN3Q9H201 632 aa17.37■□□□□ 0.37
CHMP1A-202ENST00000535997 LOXHD1Q8IVV2 1947 aa17.37■□□□□ 0.37
CHMP1A-202ENST00000535997 SRRM3A6NNA2 597 aaPredicted RBP17.37■□□□□ 0.37
CHMP1A-202ENST00000535997 DDX3YO15523 660 aaKnown RBP17.37■□□□□ 0.37
CHMP1A-202ENST00000535997 DAPK3O43293 454 aa17.37■□□□□ 0.37
CHMP1A-202ENST00000535997 TBC1D12O60347 775 aa17.37■□□□□ 0.37
CHMP1A-202ENST00000535997 CTNNA1P35221 906 aaKnown RBP17.37■□□□□ 0.37
CHMP1A-202ENST00000535997 HADHBP55084 474 aaKnown RBP17.37■□□□□ 0.37
CHMP1A-202ENST00000535997 RDH13Q8NBN7 331 aa17.37■□□□□ 0.37
CHMP1A-202ENST00000535997 BANK1Q8NDB2 785 aa17.37■□□□□ 0.37
CHMP1A-202ENST00000535997 AGPAT1Q99943 283 aa17.37■□□□□ 0.37
CHMP1A-202ENST00000535997 FAM169AQ9Y6X4 670 aa17.37■□□□□ 0.37
CHMP1A-202ENST00000535997 ANKRD65E5RJM6 399 aa17.36■□□□□ 0.37
CHMP1A-202ENST00000535997 TTI1O43156 1089 aa17.36■□□□□ 0.37
CHMP1A-202ENST00000535997 P4HBP07237 508 aaKnown RBP17.36■□□□□ 0.37
CHMP1A-202ENST00000535997 MDH1P40925 334 aaKnown RBP17.36■□□□□ 0.37
CHMP1A-202ENST00000535997 BIRC3Q13489 604 aa17.36■□□□□ 0.37
CHMP1A-202ENST00000535997 UAP1Q16222 522 aaPredicted RBP17.36■□□□□ 0.37
CHMP1A-202ENST00000535997 ARHGAP44Q17R89 818 aa17.36■□□□□ 0.37
CHMP1A-202ENST00000535997 SPATS2Q86XZ4 545 aaKnown RBP17.36■□□□□ 0.37
CHMP1A-202ENST00000535997 RHOT2Q8IXI1 618 aa17.36■□□□□ 0.37
CHMP1A-202ENST00000535997 NEUROG2Q9H2A3 272 aa17.36■□□□□ 0.37
CHMP1A-202ENST00000535997 ZNF70Q9UC06 446 aaPredicted RBP17.36■□□□□ 0.37
CHMP1A-202ENST00000535997 PPIP5K2O43314 1243 aa17.36■□□□□ 0.37
CHMP1A-202ENST00000535997 APBA3O96018 575 aa17.36■□□□□ 0.37
CHMP1A-202ENST00000535997 ITGB5P18084 799 aa17.36■□□□□ 0.37
CHMP1A-202ENST00000535997 CHRNA5P30532 468 aa17.36■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 312.4 ms