RNA–Protein interactions for RNA: ENST00000534556.1

USH1C-210, Transcript of USH1 protein network component harmonin, humanhuman

TSL 3

Gene USH1C, Length 244 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-210ENST00000534556 LONRF3Q496Y0 759 aa5.66□□□□□ -1.5
USH1C-210ENST00000534556 ADGRD2Q7Z7M1 963 aa5.66□□□□□ -1.5
USH1C-210ENST00000534556 FERMT3Q86UX7 667 aa5.66□□□□□ -1.5
USH1C-210ENST00000534556 CDR2LQ86X02 465 aaPredicted RBP5.66□□□□□ -1.5
USH1C-210ENST00000534556 ECHDC2Q86YB7 292 aa5.66□□□□□ -1.5
USH1C-210ENST00000534556 NPAS4Q8IUM7 802 aa5.66□□□□□ -1.5
USH1C-210ENST00000534556 PHF6Q8IWS0 365 aaKnown RBP eCLIP5.66□□□□□ -1.5
USH1C-210ENST00000534556 SLFN12Q8IYM2 578 aa5.66□□□□□ -1.5
USH1C-210ENST00000534556 DAW1Q8N136 415 aa5.66□□□□□ -1.5
USH1C-210ENST00000534556 MICALL1Q8N3F8 863 aa5.66□□□□□ -1.5
USH1C-210ENST00000534556 IGSF22Q8N9C0 903 aa5.66□□□□□ -1.5
USH1C-210ENST00000534556 FAM184AQ8NB25 1140 aa5.66□□□□□ -1.5
USH1C-210ENST00000534556 FBXO22Q8NEZ5 403 aa5.66□□□□□ -1.5
USH1C-210ENST00000534556 FEZF2Q8TBJ5 459 aa5.66□□□□□ -1.5
USH1C-210ENST00000534556 LPPQ93052 612 aa5.66□□□□□ -1.5
USH1C-210ENST00000534556 CEP170P1Q96L14 293 aa5.66□□□□□ -1.5
USH1C-210ENST00000534556 CASD1Q96PB1 797 aa5.66□□□□□ -1.5
USH1C-210ENST00000534556 PNMA5Q96PV4 448 aa5.66□□□□□ -1.5
USH1C-210ENST00000534556 YME1L1Q96TA2 773 aa5.66□□□□□ -1.5
USH1C-210ENST00000534556 GAS2L1Q99501 681 aaPredicted RBP5.66□□□□□ -1.5
USH1C-210ENST00000534556 POLR3CQ9BUI4 534 aaPredicted RBP5.66□□□□□ -1.5
USH1C-210ENST00000534556 COL25A1Q9BXS0 654 aaPredicted RBP5.66□□□□□ -1.5
USH1C-210ENST00000534556 RNF39Q9H2S5 420 aa5.66□□□□□ -1.5
USH1C-210ENST00000534556 ZSWIM4Q9H7M6 989 aa5.66□□□□□ -1.5
USH1C-210ENST00000534556 BRMS1Q9HCU9 246 aa5.66□□□□□ -1.5
USH1C-210ENST00000534556 ALG13Q9NP73 1137 aaKnown RBP5.66□□□□□ -1.5
USH1C-210ENST00000534556 ANKEF1Q9NU02 776 aa5.66□□□□□ -1.5
USH1C-210ENST00000534556 FOXD4L1Q9NU39 408 aa5.66□□□□□ -1.5
USH1C-210ENST00000534556 TCEAL9Q9UHQ7 104 aa5.66□□□□□ -1.5
USH1C-210ENST00000534556 CEP131Q9UPN4 1083 aa5.66□□□□□ -1.5
USH1C-210ENST00000534556 COL4A3BPQ9Y5P4 624 aa5.66□□□□□ -1.5
USH1C-210ENST00000534556 VPS13AQ96RL7 3174 aa5.65□□□□□ -1.5
USH1C-210ENST00000534556 E9PMD0 336 aa5.65□□□□□ -1.5
USH1C-210ENST00000534556 C5orf67F2Z3F1 127 aa5.65□□□□□ -1.5
USH1C-210ENST00000534556 M0QZ92 97 aa5.65□□□□□ -1.5
USH1C-210ENST00000534556 GPR182O15218 404 aa5.65□□□□□ -1.5
USH1C-210ENST00000534556 B4GALT5O43286 388 aa5.65□□□□□ -1.5
USH1C-210ENST00000534556 USO1O60763 962 aaKnown RBP5.65□□□□□ -1.5
USH1C-210ENST00000534556 CSPG5O95196 566 aa5.65□□□□□ -1.5
USH1C-210ENST00000534556 BAG4O95429 457 aaKnown RBP5.65□□□□□ -1.5
USH1C-210ENST00000534556 IGFBP6P24592 240 aaPredicted RBP5.65□□□□□ -1.5
USH1C-210ENST00000534556 RPA1P27694 616 aa5.65□□□□□ -1.5
USH1C-210ENST00000534556 BMPR1AP36894 532 aa5.65□□□□□ -1.5
USH1C-210ENST00000534556 LTBRP36941 435 aa5.65□□□□□ -1.5
USH1C-210ENST00000534556 FXR2P51116 673 aaKnown RBP eCLIP5.65□□□□□ -1.5
USH1C-210ENST00000534556 KCNQ1P51787 676 aa5.65□□□□□ -1.5
USH1C-210ENST00000534556 PTENP60484 403 aa5.65□□□□□ -1.5
USH1C-210ENST00000534556 RBM10P98175 930 aaKnown RBP5.65□□□□□ -1.5
USH1C-210ENST00000534556 ATP2C1P98194 919 aaPredicted RBP5.65□□□□□ -1.5
USH1C-210ENST00000534556 DLX2Q07687 328 aaPredicted RBP5.65□□□□□ -1.5
USH1C-210ENST00000534556 GPM6BQ13491 265 aa5.65□□□□□ -1.5
USH1C-210ENST00000534556 BTG3Q14201 252 aaPredicted RBP5.65□□□□□ -1.5
USH1C-210ENST00000534556 PTPAQ15257 358 aa5.65□□□□□ -1.5
USH1C-210ENST00000534556 SAFBQ15424 915 aaKnown RBP eCLIP5.65□□□□□ -1.5
USH1C-210ENST00000534556 MCTP1Q6DN14 999 aa5.65□□□□□ -1.5
USH1C-210ENST00000534556 AGMOQ6ZNB7 445 aa5.65□□□□□ -1.5
USH1C-210ENST00000534556 USP49Q70CQ1 688 aa5.65□□□□□ -1.5
USH1C-210ENST00000534556 SLC24A5Q71RS6 500 aa5.65□□□□□ -1.5
USH1C-210ENST00000534556 MAEAQ7L5Y9 396 aa5.65□□□□□ -1.5
USH1C-210ENST00000534556 TMEM173Q86WV6 379 aaPredicted RBP5.65□□□□□ -1.5
USH1C-210ENST00000534556 CMTR2Q8IYT2 770 aaKnown RBP5.65□□□□□ -1.5
USH1C-210ENST00000534556 FIBCD1Q8N539 461 aa5.65□□□□□ -1.5
USH1C-210ENST00000534556 KLHL23Q8NBE8 558 aa5.65□□□□□ -1.5
USH1C-210ENST00000534556 SMG8Q8ND04 991 aaKnown RBP5.65□□□□□ -1.5
USH1C-210ENST00000534556 SPPL3Q8TCT6 385 aa5.65□□□□□ -1.5
USH1C-210ENST00000534556 HELQQ8TDG4 1101 aa5.65□□□□□ -1.5
USH1C-210ENST00000534556 BCL7CQ8WUZ0 217 aaPredicted RBP5.65□□□□□ -1.5
USH1C-210ENST00000534556 NLRP7Q8WX94 980 aa5.65□□□□□ -1.5
USH1C-210ENST00000534556 TNPO1Q92973 898 aaKnown RBP5.65□□□□□ -1.5
USH1C-210ENST00000534556 CPB2Q96IY4 423 aa5.65□□□□□ -1.5
USH1C-210ENST00000534556 NLRP4Q96MN2 994 aa5.65□□□□□ -1.5
USH1C-210ENST00000534556 NECAB3Q96P71 396 aaPredicted RBP5.65□□□□□ -1.5
USH1C-210ENST00000534556 MAP7D2Q96T17 732 aa5.65□□□□□ -1.5
USH1C-210ENST00000534556 NAP1L4Q99733 375 aaKnown RBP5.65□□□□□ -1.5
USH1C-210ENST00000534556 VN1R3Q9BXE9 311 aa5.65□□□□□ -1.5
USH1C-210ENST00000534556 FTHL17Q9BXU8 183 aa5.65□□□□□ -1.5
USH1C-210ENST00000534556 EIF2AQ9BY44 585 aaKnown RBP5.65□□□□□ -1.5
USH1C-210ENST00000534556 TUFT1Q9NNX1 390 aa5.65□□□□□ -1.5
USH1C-210ENST00000534556 TYW1Q9NV66 732 aaKnown RBP5.65□□□□□ -1.5
USH1C-210ENST00000534556 MIOSQ9NXC5 875 aa5.65□□□□□ -1.5
USH1C-210ENST00000534556 SMC3Q9UQE7 1217 aa5.65□□□□□ -1.5
USH1C-210ENST00000534556 MTMR6Q9Y217 621 aa5.65□□□□□ -1.5
USH1C-210ENST00000534556 CLIC4Q9Y696 253 aa5.65□□□□□ -1.5
USH1C-210ENST00000534556 TSC2P49815 1807 aa5.64□□□□□ -1.51
USH1C-210ENST00000534556 DENND4CQ5VZ89 1909 aa5.64□□□□□ -1.51
USH1C-210ENST00000534556 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP5.64□□□□□ -1.51
USH1C-210ENST00000534556 NPHP3-ACAD11A0A0J9YXS1 232 aa5.64□□□□□ -1.51
USH1C-210ENST00000534556 A0A0U1RQF3 1178 aa5.64□□□□□ -1.51
USH1C-210ENST00000534556 DENND3A2RUS2 1198 aa5.64□□□□□ -1.51
USH1C-210ENST00000534556 TBKBP1A7MCY6 615 aa5.64□□□□□ -1.51
USH1C-210ENST00000534556 NT5C1B-RDH14C9J2C7 533 aa5.64□□□□□ -1.51
USH1C-210ENST00000534556 F8W810 466 aa5.64□□□□□ -1.51
USH1C-210ENST00000534556 LINC01565O15544 149 aa5.64□□□□□ -1.51
USH1C-210ENST00000534556 MEFVO15553 781 aaPredicted RBP5.64□□□□□ -1.51
USH1C-210ENST00000534556 MARCH6O60337 910 aa5.64□□□□□ -1.51
USH1C-210ENST00000534556 TSPAN1O60635 241 aa5.64□□□□□ -1.51
USH1C-210ENST00000534556 DDHD2O94830 711 aa5.64□□□□□ -1.51
USH1C-210ENST00000534556 RPLP2P05387 115 aaKnown RBP5.64□□□□□ -1.51
USH1C-210ENST00000534556 BMP1P13497 986 aa5.64□□□□□ -1.51
USH1C-210ENST00000534556 SYT1P21579 422 aa5.64□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 64.4 ms