RNA–Protein interactions for RNA: ENST00000531727.5

CPSF1-207, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3 BASIC

Gene CPSF1, Length 704 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-207ENST00000531727 COASYQ13057 564 aa18.88■□□□□ 0.61
CPSF1-207ENST00000531727 CLLU1OSQ5K130 101 aa18.88■□□□□ 0.61
CPSF1-207ENST00000531727 PLA2G4FQ68DD2 849 aa18.88■□□□□ 0.61
CPSF1-207ENST00000531727 KCNT2Q6UVM3 1135 aa18.88■□□□□ 0.61
CPSF1-207ENST00000531727 ZNF598Q86UK7 904 aaKnown RBP18.88■□□□□ 0.61
CPSF1-207ENST00000531727 ZNF410Q86VK4 478 aa18.88■□□□□ 0.61
CPSF1-207ENST00000531727 SMRP1Q8NCR6 262 aa18.88■□□□□ 0.61
CPSF1-207ENST00000531727 OXER1Q8TDS5 423 aa18.88■□□□□ 0.61
CPSF1-207ENST00000531727 MRPS27Q92552 414 aaKnown RBP18.88■□□□□ 0.61
CPSF1-207ENST00000531727 WASF1Q92558 559 aa18.88■□□□□ 0.61
CPSF1-207ENST00000531727 ZNF558Q96NG5 402 aa18.88■□□□□ 0.61
CPSF1-207ENST00000531727 CDCA3Q99618 268 aaPredicted RBP18.88■□□□□ 0.61
CPSF1-207ENST00000531727 NAP1L4Q99733 375 aaKnown RBP18.88■□□□□ 0.61
CPSF1-207ENST00000531727 JPH2Q9BR39 696 aaPredicted RBP18.88■□□□□ 0.61
CPSF1-207ENST00000531727 FDXACB1Q9BRP7 624 aaPredicted RBP18.88■□□□□ 0.61
CPSF1-207ENST00000531727 CHST12Q9NRB3 414 aa18.88■□□□□ 0.61
CPSF1-207ENST00000531727 PPP4R2Q9NY27 417 aa18.88■□□□□ 0.61
CPSF1-207ENST00000531727 SUCLA2Q9P2R7 463 aaPredicted RBP18.88■□□□□ 0.61
CPSF1-207ENST00000531727 PRR33A8MZF0 331 aa18.87■□□□□ 0.61
CPSF1-207ENST00000531727 TBX3O15119 743 aa18.87■□□□□ 0.61
CPSF1-207ENST00000531727 DKC1O60832 514 aaKnown RBP eCLIP18.87■□□□□ 0.61
CPSF1-207ENST00000531727 ATF7P17544 494 aaPredicted RBP18.87■□□□□ 0.61
CPSF1-207ENST00000531727 SFPQP23246 707 aaKnown RBP eCLIP18.87■□□□□ 0.61
CPSF1-207ENST00000531727 PPM1AP35813 382 aa18.87■□□□□ 0.61
CPSF1-207ENST00000531727 PLA2G5P39877 138 aa18.87■□□□□ 0.61
CPSF1-207ENST00000531727 DUSP6Q16828 381 aa18.87■□□□□ 0.61
CPSF1-207ENST00000531727 PIK3AP1Q6ZUJ8 805 aa18.87■□□□□ 0.61
CPSF1-207ENST00000531727 RHPN2Q8IUC4 686 aa18.87■□□□□ 0.61
CPSF1-207ENST00000531727 INO80BQ9C086 356 aaPredicted RBP18.87■□□□□ 0.61
CPSF1-207ENST00000531727 ORC3Q9UBD5 711 aaPredicted RBP18.87■□□□□ 0.61
CPSF1-207ENST00000531727 PUF60Q9UHX1 559 aaKnown RBP18.87■□□□□ 0.61
CPSF1-207ENST00000531727 BARX2Q9UMQ3 279 aaPredicted RBP18.87■□□□□ 0.61
CPSF1-207ENST00000531727 ARIH1Q9Y4X5 557 aaPredicted RBP18.87■□□□□ 0.61
CPSF1-207ENST00000531727 PER2O15055 1255 aa18.86■□□□□ 0.61
CPSF1-207ENST00000531727 P4HBP07237 508 aaKnown RBP18.86■□□□□ 0.61
CPSF1-207ENST00000531727 HELQQ8TDG4 1101 aa18.86■□□□□ 0.61
CPSF1-207ENST00000531727 HAS1Q92839 578 aa18.86■□□□□ 0.61
CPSF1-207ENST00000531727 TRAIPQ9BWF2 469 aa18.86■□□□□ 0.61
CPSF1-207ENST00000531727 CYP26B1Q9NR63 512 aa18.86■□□□□ 0.61
CPSF1-207ENST00000531727 PBX3P40426 434 aa18.85■□□□□ 0.61
CPSF1-207ENST00000531727 KRT17Q04695 432 aa18.85■□□□□ 0.61
CPSF1-207ENST00000531727 EARS2Q5JPH6 523 aaKnown RBP18.85■□□□□ 0.61
CPSF1-207ENST00000531727 PLPP4Q5VZY2 271 aa18.85■□□□□ 0.61
CPSF1-207ENST00000531727 POTEDQ86YR6 584 aa18.85■□□□□ 0.61
CPSF1-207ENST00000531727 KSR1Q8IVT5 923 aa18.85■□□□□ 0.61
CPSF1-207ENST00000531727 VN1R2Q8NFZ6 395 aa18.85■□□□□ 0.61
CPSF1-207ENST00000531727 FAM122AQ96E09 287 aa18.85■□□□□ 0.61
CPSF1-207ENST00000531727 NLRP4Q96MN2 994 aa18.85■□□□□ 0.61
CPSF1-207ENST00000531727 TCF25Q9BQ70 676 aa18.85■□□□□ 0.61
CPSF1-207ENST00000531727 MRPL9Q9BYD2 267 aaKnown RBP18.85■□□□□ 0.61
CPSF1-207ENST00000531727 ENTPD7Q9NQZ7 604 aa18.85■□□□□ 0.61
CPSF1-207ENST00000531727 SPG21Q9NZD8 308 aa18.85■□□□□ 0.61
CPSF1-207ENST00000531727 WRAP73Q9P2S5 460 aaPredicted RBP18.85■□□□□ 0.61
CPSF1-207ENST00000531727 PPME1Q9Y570 386 aa18.85■□□□□ 0.61
CPSF1-207ENST00000531727 MARCH6O60337 910 aa18.84■□□□□ 0.61
CPSF1-207ENST00000531727 SKIP12755 728 aa18.84■□□□□ 0.61
CPSF1-207ENST00000531727 FDPSP14324 419 aaKnown RBP18.84■□□□□ 0.61
CPSF1-207ENST00000531727 KRT2P35908 639 aa18.84■□□□□ 0.61
CPSF1-207ENST00000531727 PHKA2P46019 1235 aa18.84■□□□□ 0.61
CPSF1-207ENST00000531727 NPEPPSP55786 919 aa18.84■□□□□ 0.61
CPSF1-207ENST00000531727 RBM10P98175 930 aaKnown RBP18.84■□□□□ 0.61
CPSF1-207ENST00000531727 EPHA7Q15375 998 aa18.84■□□□□ 0.61
CPSF1-207ENST00000531727 TWF2Q6IBS0 349 aaKnown RBP18.84■□□□□ 0.61
CPSF1-207ENST00000531727 EXOC8Q8IYI6 725 aa18.84■□□□□ 0.61
CPSF1-207ENST00000531727 NECAB1Q8N987 351 aa18.84■□□□□ 0.61
CPSF1-207ENST00000531727 SLC7A3Q8WY07 619 aa18.84■□□□□ 0.61
CPSF1-207ENST00000531727 RSPH1Q8WYR4 309 aa18.84■□□□□ 0.61
CPSF1-207ENST00000531727 GTF3C6Q969F1 213 aa18.84■□□□□ 0.61
CPSF1-207ENST00000531727 CEP170P1Q96L14 293 aa18.84■□□□□ 0.61
CPSF1-207ENST00000531727 BRMS1Q9HCU9 246 aa18.84■□□□□ 0.61
CPSF1-207ENST00000531727 NGRNQ9NPE2 291 aaKnown RBP18.84■□□□□ 0.61
CPSF1-207ENST00000531727 PIN4Q9Y237 131 aaKnown RBP18.84■□□□□ 0.61
CPSF1-207ENST00000531727 USP15Q9Y4E8 981 aaPredicted RBP18.84■□□□□ 0.61
CPSF1-207ENST00000531727 ARID2Q68CP9 1835 aa18.84■□□□□ 0.61
CPSF1-207ENST00000531727 FAM205CA6NFA0 338 aa18.83■□□□□ 0.6
CPSF1-207ENST00000531727 POLGP54098 1239 aaPredicted RBP18.83■□□□□ 0.6
CPSF1-207ENST00000531727 NR5A1Q13285 461 aa18.83■□□□□ 0.6
CPSF1-207ENST00000531727 KCNC3Q14003 757 aa18.83■□□□□ 0.6
CPSF1-207ENST00000531727 ME3Q16798 604 aa18.83■□□□□ 0.6
CPSF1-207ENST00000531727 ERICH6BQ5W0A0 696 aa18.83■□□□□ 0.6
CPSF1-207ENST00000531727 NCAPH2Q6IBW4 605 aa18.83■□□□□ 0.6
CPSF1-207ENST00000531727 CATSPER4Q7RTX7 472 aa18.83■□□□□ 0.6
CPSF1-207ENST00000531727 C4orf19Q8IY42 314 aa18.83■□□□□ 0.6
CPSF1-207ENST00000531727 SLFN12Q8IYM2 578 aa18.83■□□□□ 0.6
CPSF1-207ENST00000531727 SLC39A11Q8N1S5 342 aa18.83■□□□□ 0.6
CPSF1-207ENST00000531727 ZNF579Q8NAF0 562 aaKnown RBP18.83■□□□□ 0.6
CPSF1-207ENST00000531727 TNFRSF25Q93038 417 aa18.83■□□□□ 0.6
CPSF1-207ENST00000531727 LXNQ9BS40 222 aa18.83■□□□□ 0.6
CPSF1-207ENST00000531727 DHX33Q9H6R0 707 aaKnown RBP18.83■□□□□ 0.6
CPSF1-207ENST00000531727 IFT122Q9HBG6 1241 aa18.83■□□□□ 0.6
CPSF1-207ENST00000531727 COL4A3BPQ9Y5P4 624 aa18.83■□□□□ 0.6
CPSF1-207ENST00000531727 HIDE1A8MVS5 230 aa18.82■□□□□ 0.6
CPSF1-207ENST00000531727 BAG4O95429 457 aaKnown RBP18.82■□□□□ 0.6
CPSF1-207ENST00000531727 LARGE1O95461 756 aa18.82■□□□□ 0.6
CPSF1-207ENST00000531727 SRGAP2BP0DMP2 458 aa18.82■□□□□ 0.6
CPSF1-207ENST00000531727 YWHABP31946 246 aaKnown RBP18.82■□□□□ 0.6
CPSF1-207ENST00000531727 RFC5P40937 340 aa18.82■□□□□ 0.6
CPSF1-207ENST00000531727 BCAR1P56945 870 aa18.82■□□□□ 0.6
CPSF1-207ENST00000531727 SPIRE1Q08AE8 756 aa18.82■□□□□ 0.6
CPSF1-207ENST00000531727 HERC4Q5GLZ8 1057 aaPredicted RBP18.82■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms