RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 S1PR5Q9H228 398 aa12.77□□□□□ -0.37
VPS28-214ENST00000531032 ENTPD7Q9NQZ7 604 aa12.77□□□□□ -0.37
VPS28-214ENST00000531032 CHST12Q9NRB3 414 aa12.77□□□□□ -0.37
VPS28-214ENST00000531032 SPG21Q9NZD8 308 aa12.77□□□□□ -0.37
VPS28-214ENST00000531032 HIDE1A8MVS5 230 aa12.76□□□□□ -0.37
VPS28-214ENST00000531032 SLC37A4O43826 429 aa12.76□□□□□ -0.37
VPS28-214ENST00000531032 KRT17Q04695 432 aa12.76□□□□□ -0.37
VPS28-214ENST00000531032 NONOQ15233 471 aaKnown RBP eCLIP12.76□□□□□ -0.37
VPS28-214ENST00000531032 ANKRD54Q6NXT1 300 aa12.76□□□□□ -0.37
VPS28-214ENST00000531032 SYCE2Q6PIF2 218 aa12.76□□□□□ -0.37
VPS28-214ENST00000531032 CPLX2Q6PUV4 134 aaKnown RBP12.76□□□□□ -0.37
VPS28-214ENST00000531032 BMP8AQ7Z5Y6 402 aa12.76□□□□□ -0.37
VPS28-214ENST00000531032 ZNF410Q86VK4 478 aa12.76□□□□□ -0.37
VPS28-214ENST00000531032 SLC39A11Q8N1S5 342 aa12.76□□□□□ -0.37
VPS28-214ENST00000531032 RNF169Q8NCN4 708 aa12.76□□□□□ -0.37
VPS28-214ENST00000531032 HELQQ8TDG4 1101 aa12.76□□□□□ -0.37
VPS28-214ENST00000531032 RSPH1Q8WYR4 309 aa12.76□□□□□ -0.37
VPS28-214ENST00000531032 MFSD14AQ96MC6 490 aa12.76□□□□□ -0.37
VPS28-214ENST00000531032 AIFM3Q96NN9 605 aa12.76□□□□□ -0.37
VPS28-214ENST00000531032 LARP6Q9BRS8 491 aaKnown RBP12.76□□□□□ -0.37
VPS28-214ENST00000531032 MRPL9Q9BYD2 267 aaKnown RBP12.76□□□□□ -0.37
VPS28-214ENST00000531032 DDX25Q9UHL0 483 aaKnown RBP12.76□□□□□ -0.37
VPS28-214ENST00000531032 A0A087WZ62 844 aa12.75□□□□□ -0.37
VPS28-214ENST00000531032 MAFO75444 373 aaPredicted RBP12.75□□□□□ -0.37
VPS28-214ENST00000531032 CSDE1O75534 798 aaKnown RBP12.75□□□□□ -0.37
VPS28-214ENST00000531032 SFPQP23246 707 aaKnown RBP eCLIP12.75□□□□□ -0.37
VPS28-214ENST00000531032 TECP42680 631 aa12.75□□□□□ -0.37
VPS28-214ENST00000531032 PHKA2P46019 1235 aa12.75□□□□□ -0.37
VPS28-214ENST00000531032 DNM2P50570 870 aa12.75□□□□□ -0.37
VPS28-214ENST00000531032 PSMC5P62195 406 aa12.75□□□□□ -0.37
VPS28-214ENST00000531032 ZXDAP98168 799 aa12.75□□□□□ -0.37
VPS28-214ENST00000531032 INF2Q27J81 1249 aa12.75□□□□□ -0.37
VPS28-214ENST00000531032 TRIM67Q6ZTA4 783 aa12.75□□□□□ -0.37
VPS28-214ENST00000531032 ANO5Q75V66 913 aa12.75□□□□□ -0.37
VPS28-214ENST00000531032 KRT25Q7Z3Z0 450 aa12.75□□□□□ -0.37
VPS28-214ENST00000531032 FBXL18Q96ME1 805 aa12.75□□□□□ -0.37
VPS28-214ENST00000531032 SH2D3AQ9BRG2 576 aa12.75□□□□□ -0.37
VPS28-214ENST00000531032 FDXACB1Q9BRP7 624 aaPredicted RBP12.75□□□□□ -0.37
VPS28-214ENST00000531032 PHF20Q9BVI0 1012 aa12.75□□□□□ -0.37
VPS28-214ENST00000531032 VAV3Q9UKW4 847 aa12.75□□□□□ -0.37
VPS28-214ENST00000531032 TMEM221A6NGB7 291 aa12.74□□□□□ -0.37
VPS28-214ENST00000531032 C2orf71A6NGG8 1288 aa12.74□□□□□ -0.37
VPS28-214ENST00000531032 DDX11L8A8MPP1 907 aa12.74□□□□□ -0.37
VPS28-214ENST00000531032 M0R296 226 aa12.74□□□□□ -0.37
VPS28-214ENST00000531032 EML1O00423 815 aa12.74□□□□□ -0.37
VPS28-214ENST00000531032 HOXB8P17481 243 aaPredicted RBP12.74□□□□□ -0.37
VPS28-214ENST00000531032 BCAR1P56945 870 aa12.74□□□□□ -0.37
VPS28-214ENST00000531032 NHLH1Q02575 133 aa12.74□□□□□ -0.37
VPS28-214ENST00000531032 STK3Q13188 491 aa12.74□□□□□ -0.37
VPS28-214ENST00000531032 PPP2R5CQ13362 524 aa12.74□□□□□ -0.37
VPS28-214ENST00000531032 SMC1AQ14683 1233 aaKnown RBP12.74□□□□□ -0.37
VPS28-214ENST00000531032 TMC7Q7Z402 723 aa12.74□□□□□ -0.37
VPS28-214ENST00000531032 RHPN2Q8IUC4 686 aa12.74□□□□□ -0.37
VPS28-214ENST00000531032 MRPL43Q8N983 215 aaKnown RBP12.74□□□□□ -0.37
VPS28-214ENST00000531032 RPGRIP1Q96KN7 1286 aa12.74□□□□□ -0.37
VPS28-214ENST00000531032 JPH2Q9BR39 696 aaPredicted RBP12.74□□□□□ -0.37
VPS28-214ENST00000531032 INO80BQ9C086 356 aaPredicted RBP12.74□□□□□ -0.37
VPS28-214ENST00000531032 KCNMB3Q9NPA1 279 aa12.74□□□□□ -0.37
VPS28-214ENST00000531032 PDRG1Q9NUG6 133 aa12.74□□□□□ -0.37
VPS28-214ENST00000531032 SUCLA2Q9P2R7 463 aaPredicted RBP12.74□□□□□ -0.37
VPS28-214ENST00000531032 KCNJ14Q9UNX9 436 aa12.74□□□□□ -0.37
VPS28-214ENST00000531032 STK36Q9NRP7 1315 aa12.73□□□□□ -0.37
VPS28-214ENST00000531032 CARNS1A5YM72 827 aa12.73□□□□□ -0.37
VPS28-214ENST00000531032 CDKL5O76039 1030 aa12.73□□□□□ -0.37
VPS28-214ENST00000531032 CENPBP07199 599 aaPredicted RBP12.73□□□□□ -0.37
VPS28-214ENST00000531032 SKIP12755 728 aa12.73□□□□□ -0.37
VPS28-214ENST00000531032 GCFC2P16383 781 aaKnown RBP12.73□□□□□ -0.37
VPS28-214ENST00000531032 QARSP47897 775 aaKnown RBP12.73□□□□□ -0.37
VPS28-214ENST00000531032 ALDH7A1P49419 539 aaKnown RBP12.73□□□□□ -0.37
VPS28-214ENST00000531032 SCRN1Q12765 414 aa12.73□□□□□ -0.37
VPS28-214ENST00000531032 LETM2Q2VYF4 491 aa12.73□□□□□ -0.37
VPS28-214ENST00000531032 PLA2G4FQ68DD2 849 aa12.73□□□□□ -0.37
VPS28-214ENST00000531032 TWF2Q6IBS0 349 aaKnown RBP12.73□□□□□ -0.37
VPS28-214ENST00000531032 PPP4R3AQ6IN85 833 aa12.73□□□□□ -0.37
VPS28-214ENST00000531032 LLGL2Q6P1M3 1020 aa12.73□□□□□ -0.37
VPS28-214ENST00000531032 NEK8Q86SG6 692 aa12.73□□□□□ -0.37
VPS28-214ENST00000531032 CASP10Q92851 521 aa12.73□□□□□ -0.37
VPS28-214ENST00000531032 FAM20AQ96MK3 541 aa12.73□□□□□ -0.37
VPS28-214ENST00000531032 IFT122Q9HBG6 1241 aa12.73□□□□□ -0.37
VPS28-214ENST00000531032 CYP26B1Q9NR63 512 aa12.73□□□□□ -0.37
VPS28-214ENST00000531032 FAM105AQ9NUU6 356 aa12.73□□□□□ -0.37
VPS28-214ENST00000531032 PIN4Q9Y237 131 aaKnown RBP12.73□□□□□ -0.37
VPS28-214ENST00000531032 PPME1Q9Y570 386 aa12.73□□□□□ -0.37
VPS28-214ENST00000531032 HCFC2Q9Y5Z7 792 aa12.73□□□□□ -0.37
VPS28-214ENST00000531032 CCDC194A0A1B0GVG4 234 aa12.72□□□□□ -0.37
VPS28-214ENST00000531032 NT5C1B-RDH14C9J2C7 533 aa12.72□□□□□ -0.37
VPS28-214ENST00000531032 TBX3O15119 743 aa12.72□□□□□ -0.37
VPS28-214ENST00000531032 DKC1O60832 514 aaKnown RBP eCLIP12.72□□□□□ -0.37
VPS28-214ENST00000531032 CLASP2O75122 1294 aaKnown RBP12.72□□□□□ -0.37
VPS28-214ENST00000531032 ZNF623O75123 536 aa12.72□□□□□ -0.37
VPS28-214ENST00000531032 RAB27AP51159 221 aa12.72□□□□□ -0.37
VPS28-214ENST00000531032 SIGLEC14Q08ET2 396 aa12.72□□□□□ -0.37
VPS28-214ENST00000531032 TPRNQ4KMQ1 711 aa12.72□□□□□ -0.37
VPS28-214ENST00000531032 GLB1LQ6UWU2 654 aa12.72□□□□□ -0.37
VPS28-214ENST00000531032 ALYREFQ86V81 257 aaKnown RBP12.72□□□□□ -0.37
VPS28-214ENST00000531032 TMEM173Q86WV6 379 aaPredicted RBP12.72□□□□□ -0.37
VPS28-214ENST00000531032 KSR1Q8IVT5 923 aa12.72□□□□□ -0.37
VPS28-214ENST00000531032 SLC7A3Q8WY07 619 aa12.72□□□□□ -0.37
VPS28-214ENST00000531032 LPPQ93052 612 aa12.72□□□□□ -0.37
VPS28-214ENST00000531032 PBXIP1Q96AQ6 731 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms