RNA–Protein interactions for RNA: ENST00000529566.1

TSPAN4-218, Transcript of tetraspanin 4, humanhuman

TSL 2

Gene TSPAN4, Length 706 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN4-218ENST00000529566 USP28Q96RU2 1077 aa17.93■□□□□ 0.46
TSPAN4-218ENST00000529566 BHMT2Q9H2M3 363 aa17.93■□□□□ 0.46
TSPAN4-218ENST00000529566 GPRC5CQ9NQ84 441 aa17.93■□□□□ 0.46
TSPAN4-218ENST00000529566 MORC2Q9Y6X9 1032 aaPredicted RBP17.93■□□□□ 0.46
TSPAN4-218ENST00000529566 COL4A6Q14031 1691 aa17.93■□□□□ 0.46
TSPAN4-218ENST00000529566 DENND3A2RUS2 1198 aa17.92■□□□□ 0.46
TSPAN4-218ENST00000529566 ARHGEF35A5YM69 484 aa17.92■□□□□ 0.46
TSPAN4-218ENST00000529566 EPOPA6NHQ4 379 aa17.92■□□□□ 0.46
TSPAN4-218ENST00000529566 DGKIO75912 1065 aa17.92■□□□□ 0.46
TSPAN4-218ENST00000529566 EYA4O95677 639 aa17.92■□□□□ 0.46
TSPAN4-218ENST00000529566 ZSCAN22P10073 491 aaPredicted RBP17.92■□□□□ 0.46
TSPAN4-218ENST00000529566 PTENP60484 403 aa17.92■□□□□ 0.46
TSPAN4-218ENST00000529566 SRGAP1Q7Z6B7 1085 aa17.92■□□□□ 0.46
TSPAN4-218ENST00000529566 IFNLR1Q8IU57 520 aaPredicted RBP17.92■□□□□ 0.46
TSPAN4-218ENST00000529566 NPAS4Q8IUM7 802 aa17.92■□□□□ 0.46
TSPAN4-218ENST00000529566 RNF149Q8NC42 400 aa17.92■□□□□ 0.46
TSPAN4-218ENST00000529566 MCPH1Q8NEM0 835 aa17.92■□□□□ 0.46
TSPAN4-218ENST00000529566 CCDC43Q96MW1 224 aaKnown RBP17.92■□□□□ 0.46
TSPAN4-218ENST00000529566 INO80BQ9C086 356 aaPredicted RBP17.92■□□□□ 0.46
TSPAN4-218ENST00000529566 POLR3FQ9H1D9 316 aaPredicted RBP17.92■□□□□ 0.46
TSPAN4-218ENST00000529566 C1orf112Q9NSG2 853 aa17.92■□□□□ 0.46
TSPAN4-218ENST00000529566 FBXO2Q9UK22 296 aaPredicted RBP17.92■□□□□ 0.46
TSPAN4-218ENST00000529566 DNM3Q9UQ16 869 aa17.92■□□□□ 0.46
TSPAN4-218ENST00000529566 SLC26A4O43511 780 aa17.91■□□□□ 0.46
TSPAN4-218ENST00000529566 LINC00271P0C7V0 271 aa17.91■□□□□ 0.46
TSPAN4-218ENST00000529566 MARCKSP29966 332 aaPredicted RBP17.91■□□□□ 0.46
TSPAN4-218ENST00000529566 LONP1P36776 959 aaKnown RBP17.91■□□□□ 0.46
TSPAN4-218ENST00000529566 NASPP49321 788 aaPredicted RBP17.91■□□□□ 0.46
TSPAN4-218ENST00000529566 CEBPZQ03701 1054 aaKnown RBP17.91■□□□□ 0.46
TSPAN4-218ENST00000529566 CAPSQ13938 189 aa17.91■□□□□ 0.46
TSPAN4-218ENST00000529566 SLC39A14Q15043 492 aa17.91■□□□□ 0.46
TSPAN4-218ENST00000529566 TMEM119Q4V9L6 283 aa17.91■□□□□ 0.46
TSPAN4-218ENST00000529566 MAEAQ7L5Y9 396 aa17.91■□□□□ 0.46
TSPAN4-218ENST00000529566 KCTD17Q8N5Z5 321 aa17.91■□□□□ 0.46
TSPAN4-218ENST00000529566 LRRC15Q8TF66 581 aa17.91■□□□□ 0.46
TSPAN4-218ENST00000529566 MYLIPQ8WY64 445 aa17.91■□□□□ 0.46
TSPAN4-218ENST00000529566 YME1L1Q96TA2 773 aa17.91■□□□□ 0.46
TSPAN4-218ENST00000529566 PRDM12Q9H4Q4 367 aa17.91■□□□□ 0.46
TSPAN4-218ENST00000529566 CHST12Q9NRB3 414 aa17.91■□□□□ 0.46
TSPAN4-218ENST00000529566 STXBP5LQ9Y2K9 1186 aa17.91■□□□□ 0.46
TSPAN4-218ENST00000529566 SRPRBQ9Y5M8 271 aaKnown RBP17.91■□□□□ 0.46
TSPAN4-218ENST00000529566 SFPQP23246 707 aaKnown RBP eCLIP17.9■□□□□ 0.46
TSPAN4-218ENST00000529566 HOXA11P31270 313 aaPredicted RBP17.9■□□□□ 0.46
TSPAN4-218ENST00000529566 ERVK-21P61565 698 aa17.9■□□□□ 0.46
TSPAN4-218ENST00000529566 ADGRE1Q14246 886 aa17.9■□□□□ 0.46
TSPAN4-218ENST00000529566 FOXD4L5Q5VV16 416 aaPredicted RBP17.9■□□□□ 0.46
TSPAN4-218ENST00000529566 CABP7Q86V35 215 aa17.9■□□□□ 0.46
TSPAN4-218ENST00000529566 FOXD4L4Q8WXT5 416 aaPredicted RBP17.9■□□□□ 0.46
TSPAN4-218ENST00000529566 BSNDQ8WZ55 320 aa17.9■□□□□ 0.46
TSPAN4-218ENST00000529566 TRAIPQ9BWF2 469 aa17.9■□□□□ 0.46
TSPAN4-218ENST00000529566 NFKBIZQ9BYH8 718 aa17.9■□□□□ 0.46
TSPAN4-218ENST00000529566 CERS4Q9HA82 394 aa17.9■□□□□ 0.46
TSPAN4-218ENST00000529566 F13A1P00488 732 aa17.89■□□□□ 0.45
TSPAN4-218ENST00000529566 STAG3L1P0CL83 205 aa17.89■□□□□ 0.45
TSPAN4-218ENST00000529566 ZSCAN20P17040 1043 aaPredicted RBP17.89■□□□□ 0.45
TSPAN4-218ENST00000529566 PHKA2P46019 1235 aa17.89■□□□□ 0.45
TSPAN4-218ENST00000529566 GATMP50440 423 aa17.89■□□□□ 0.45
TSPAN4-218ENST00000529566 MBTD1Q05BQ5 628 aa17.89■□□□□ 0.45
TSPAN4-218ENST00000529566 TFDP1Q14186 410 aa17.89■□□□□ 0.45
TSPAN4-218ENST00000529566 FAM102BQ5T8I3 360 aa17.89■□□□□ 0.45
TSPAN4-218ENST00000529566 C1orf186Q6ZWK4 172 aa17.89■□□□□ 0.45
TSPAN4-218ENST00000529566 USP49Q70CQ1 688 aa17.89■□□□□ 0.45
TSPAN4-218ENST00000529566 ZNF598Q86UK7 904 aaKnown RBP17.89■□□□□ 0.45
TSPAN4-218ENST00000529566 LINC00301Q8NCQ3 95 aa17.89■□□□□ 0.45
TSPAN4-218ENST00000529566 CLIC6Q96NY7 704 aa17.89■□□□□ 0.45
TSPAN4-218ENST00000529566 TGS1Q96RS0 853 aaKnown RBP17.89■□□□□ 0.45
TSPAN4-218ENST00000529566 PLIN2Q99541 437 aa17.89■□□□□ 0.45
TSPAN4-218ENST00000529566 RUSC1Q9BVN2 902 aa17.89■□□□□ 0.45
TSPAN4-218ENST00000529566 CSRNP2Q9H175 543 aa17.89■□□□□ 0.45
TSPAN4-218ENST00000529566 ELAC1Q9H777 363 aaKnown RBP17.89■□□□□ 0.45
TSPAN4-218ENST00000529566 POLD4Q9HCU8 107 aa17.89■□□□□ 0.45
TSPAN4-218ENST00000529566 RNF19AQ9NV58 838 aa17.89■□□□□ 0.45
TSPAN4-218ENST00000529566 TFIP11Q9UBB9 837 aaKnown RBP17.89■□□□□ 0.45
TSPAN4-218ENST00000529566 ZDHHC9Q9Y397 364 aa17.89■□□□□ 0.45
TSPAN4-218ENST00000529566 PCDHB7Q9Y5E2 793 aa17.89■□□□□ 0.45
TSPAN4-218ENST00000529566 TRANK1O15050 2925 aa17.89■□□□□ 0.45
TSPAN4-218ENST00000529566 A0A0U1RQF3 1178 aa17.88■□□□□ 0.45
TSPAN4-218ENST00000529566 RFXAPO00287 272 aa17.88■□□□□ 0.45
TSPAN4-218ENST00000529566 UBA7P41226 1012 aa17.88■□□□□ 0.45
TSPAN4-218ENST00000529566 SLC12A3P55017 1021 aa17.88■□□□□ 0.45
TSPAN4-218ENST00000529566 ZRSR1Q15695 479 aaKnown RBP17.88■□□□□ 0.45
TSPAN4-218ENST00000529566 AMHR2Q16671 573 aa17.88■□□□□ 0.45
TSPAN4-218ENST00000529566 RINT1Q6NUQ1 792 aa17.88■□□□□ 0.45
TSPAN4-218ENST00000529566 CATSPER4Q7RTX7 472 aa17.88■□□□□ 0.45
TSPAN4-218ENST00000529566 ECHDC2Q86YB7 292 aa17.88■□□□□ 0.45
TSPAN4-218ENST00000529566 DAW1Q8N136 415 aa17.88■□□□□ 0.45
TSPAN4-218ENST00000529566 SYT2Q8N9I0 419 aaPredicted RBP17.88■□□□□ 0.45
TSPAN4-218ENST00000529566 ARNTL2Q8WYA1 636 aa17.88■□□□□ 0.45
TSPAN4-218ENST00000529566 EPSTI1Q96J88 318 aa17.88■□□□□ 0.45
TSPAN4-218ENST00000529566 C17orf80Q9BSJ5 609 aa17.88■□□□□ 0.45
TSPAN4-218ENST00000529566 CCSER1Q9C0I3 900 aa17.88■□□□□ 0.45
TSPAN4-218ENST00000529566 NT5C3AQ9H0P0 336 aa17.88■□□□□ 0.45
TSPAN4-218ENST00000529566 AGPAT5Q9NUQ2 364 aa17.88■□□□□ 0.45
TSPAN4-218ENST00000529566 TMEM161AQ9NX61 479 aa17.88■□□□□ 0.45
TSPAN4-218ENST00000529566 ADGRA3Q8IWK6 1321 aa17.88■□□□□ 0.45
TSPAN4-218ENST00000529566 EYSQ5T1H1 3165 aa17.88■□□□□ 0.45
TSPAN4-218ENST00000529566 LPXNO60711 386 aa17.87■□□□□ 0.45
TSPAN4-218ENST00000529566 ATF7P17544 494 aaPredicted RBP17.87■□□□□ 0.45
TSPAN4-218ENST00000529566 MAPK7Q13164 816 aa17.87■□□□□ 0.45
TSPAN4-218ENST00000529566 PCBP1Q15365 356 aaKnown RBP eCLIP17.87■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms