RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 MLLT6P55198 1093 aaPredicted RBP4.17□□□□□ -1.74
CD44-229ENST00000528672 ITGA1P56199 1179 aa4.17□□□□□ -1.74
CD44-229ENST00000528672 IRX6P78412 446 aaPredicted RBP4.17□□□□□ -1.74
CD44-229ENST00000528672 SRSF2Q01130 221 aaKnown RBP4.17□□□□□ -1.74
CD44-229ENST00000528672 PICALMQ13492 652 aa4.17□□□□□ -1.74
CD44-229ENST00000528672 LRRC32Q14392 662 aa4.17□□□□□ -1.74
CD44-229ENST00000528672 NOLC1Q14978 699 aaKnown RBP eCLIP4.17□□□□□ -1.74
CD44-229ENST00000528672 CLUL1Q15846 466 aa4.17□□□□□ -1.74
CD44-229ENST00000528672 SKIDA1Q1XH10 827 aa4.17□□□□□ -1.74
CD44-229ENST00000528672 EFCAB2Q5VUJ9 269 aa4.17□□□□□ -1.74
CD44-229ENST00000528672 CCDC62Q6P9F0 684 aa4.17□□□□□ -1.74
CD44-229ENST00000528672 EP400NLQ6ZTU2 488 aa4.17□□□□□ -1.74
CD44-229ENST00000528672 SAPCD2Q86UD0 394 aa4.17□□□□□ -1.74
CD44-229ENST00000528672 TRIM48Q8IWZ4 208 aa4.17□□□□□ -1.74
CD44-229ENST00000528672 HIPK4Q8NE63 616 aa4.17□□□□□ -1.74
CD44-229ENST00000528672 TIFAQ96CG3 184 aa4.17□□□□□ -1.74
CD44-229ENST00000528672 LRGUKQ96M69 825 aa4.17□□□□□ -1.74
CD44-229ENST00000528672 SARGQ9BW04 601 aa4.17□□□□□ -1.74
CD44-229ENST00000528672 QRSL1Q9H0R6 528 aaKnown RBP4.17□□□□□ -1.74
CD44-229ENST00000528672 PCIF1Q9H4Z3 704 aa4.17□□□□□ -1.74
CD44-229ENST00000528672 SPATA6Q9NWH7 488 aaPredicted RBP4.17□□□□□ -1.74
CD44-229ENST00000528672 USP25Q9UHP3 1055 aa4.17□□□□□ -1.74
CD44-229ENST00000528672 CROTQ9UKG9 612 aa4.17□□□□□ -1.74
CD44-229ENST00000528672 CDC42EP3Q9UKI2 254 aa4.17□□□□□ -1.74
CD44-229ENST00000528672 ZNF839A8K0R7 811 aa4.16□□□□□ -1.74
CD44-229ENST00000528672 GOLGA6L22H0YM25 854 aa4.16□□□□□ -1.74
CD44-229ENST00000528672 WNT10BO00744 389 aa4.16□□□□□ -1.74
CD44-229ENST00000528672 INHBBP09529 407 aa4.16□□□□□ -1.74
CD44-229ENST00000528672 MYBP10242 640 aa4.16□□□□□ -1.74
CD44-229ENST00000528672 LPOP22079 712 aaPredicted RBP4.16□□□□□ -1.74
CD44-229ENST00000528672 CTSWP56202 376 aa4.16□□□□□ -1.74
CD44-229ENST00000528672 PHC1P78364 1004 aa4.16□□□□□ -1.74
CD44-229ENST00000528672 IL13RA1P78552 427 aa4.16□□□□□ -1.74
CD44-229ENST00000528672 FOXO4P98177 505 aa4.16□□□□□ -1.74
CD44-229ENST00000528672 CD83Q01151 205 aa4.16□□□□□ -1.74
CD44-229ENST00000528672 SLC6A3Q01959 620 aa4.16□□□□□ -1.74
CD44-229ENST00000528672 DLX2Q07687 328 aaPredicted RBP4.16□□□□□ -1.74
CD44-229ENST00000528672 ACAP2Q15057 778 aa4.16□□□□□ -1.74
CD44-229ENST00000528672 PITRM1Q5JRX3 1037 aa4.16□□□□□ -1.74
CD44-229ENST00000528672 TOR2AQ5JU69 321 aa4.16□□□□□ -1.74
CD44-229ENST00000528672 EPM2AIP1Q7L775 607 aaPredicted RBP4.16□□□□□ -1.74
CD44-229ENST00000528672 CMTR2Q8IYT2 770 aaKnown RBP4.16□□□□□ -1.74
CD44-229ENST00000528672 PJA1Q8NG27 643 aa4.16□□□□□ -1.74
CD44-229ENST00000528672 IL17RAQ96F46 866 aa4.16□□□□□ -1.74
CD44-229ENST00000528672 PWWP2AQ96N64 755 aa4.16□□□□□ -1.74
CD44-229ENST00000528672 AIFM3Q96NN9 605 aa4.16□□□□□ -1.74
CD44-229ENST00000528672 WRNIP1Q96S55 665 aa4.16□□□□□ -1.74
CD44-229ENST00000528672 NUP88Q99567 741 aaPredicted RBP4.16□□□□□ -1.74
CD44-229ENST00000528672 ARPC5LQ9BPX5 153 aa4.16□□□□□ -1.74
CD44-229ENST00000528672 MAN1C1Q9NR34 630 aa4.16□□□□□ -1.74
CD44-229ENST00000528672 SAP30BPQ9UHR5 308 aaKnown RBP4.16□□□□□ -1.74
CD44-229ENST00000528672 ZFP69BQ9UJL9 534 aa4.16□□□□□ -1.74
CD44-229ENST00000528672 TMPRSS11EQ9UL52 423 aa4.16□□□□□ -1.74
CD44-229ENST00000528672 INVSQ9Y283 1065 aa4.16□□□□□ -1.74
CD44-229ENST00000528672 TRIM75PA6NK02 468 aa4.15□□□□□ -1.75
CD44-229ENST00000528672 IFRD1O00458 451 aaPredicted RBP4.15□□□□□ -1.75
CD44-229ENST00000528672 HIP1RO75146 1068 aa4.15□□□□□ -1.75
CD44-229ENST00000528672 PCDH8O95206 1070 aa4.15□□□□□ -1.75
CD44-229ENST00000528672 PRLP01236 227 aa4.15□□□□□ -1.75
CD44-229ENST00000528672 CENPBP07199 599 aaPredicted RBP4.15□□□□□ -1.75
CD44-229ENST00000528672 COL6A1P12109 1028 aa4.15□□□□□ -1.75
CD44-229ENST00000528672 HSPA6P17066 643 aa4.15□□□□□ -1.75
CD44-229ENST00000528672 MORC3Q14149 939 aa4.15□□□□□ -1.75
CD44-229ENST00000528672 GBX1Q14549 363 aa4.15□□□□□ -1.75
CD44-229ENST00000528672 DHX8Q14562 1220 aaKnown RBP4.15□□□□□ -1.75
CD44-229ENST00000528672 GRM3Q14832 879 aa4.15□□□□□ -1.75
CD44-229ENST00000528672 ZRSR2Q15696 482 aaKnown RBP4.15□□□□□ -1.75
CD44-229ENST00000528672 VWA3BQ502W6 1294 aa4.15□□□□□ -1.75
CD44-229ENST00000528672 COBLL1Q53SF7 1204 aa4.15□□□□□ -1.75
CD44-229ENST00000528672 GPR158Q5T848 1215 aa4.15□□□□□ -1.75
CD44-229ENST00000528672 PRAMEF9Q5VWM5 478 aa4.15□□□□□ -1.75
CD44-229ENST00000528672 IL31Q6EBC2 164 aa4.15□□□□□ -1.75
CD44-229ENST00000528672 CC2D1AQ6P1N0 951 aaPredicted RBP4.15□□□□□ -1.75
CD44-229ENST00000528672 TTLL7Q6ZT98 887 aa4.15□□□□□ -1.75
CD44-229ENST00000528672 FRMD7Q6ZUT3 714 aa4.15□□□□□ -1.75
CD44-229ENST00000528672 CXorf67Q86X51 503 aaPredicted RBP4.15□□□□□ -1.75
CD44-229ENST00000528672 NLGN4XQ8N0W4 816 aa4.15□□□□□ -1.75
CD44-229ENST00000528672 BCL6BQ8N143 479 aaPredicted RBP4.15□□□□□ -1.75
CD44-229ENST00000528672 PPM1NQ8N819 430 aa4.15□□□□□ -1.75
CD44-229ENST00000528672 TTLL6Q8N841 843 aa4.15□□□□□ -1.75
CD44-229ENST00000528672 ZNF610Q8N9Z0 462 aa4.15□□□□□ -1.75
CD44-229ENST00000528672 FNIP1Q8TF40 1166 aa4.15□□□□□ -1.75
CD44-229ENST00000528672 LMBR1Q8WVP7 490 aa4.15□□□□□ -1.75
CD44-229ENST00000528672 ZCCHC14Q8WYQ9 949 aaKnown RBP4.15□□□□□ -1.75
CD44-229ENST00000528672 TTC17Q96AE7 1141 aa4.15□□□□□ -1.75
CD44-229ENST00000528672 ZBTB8AQ96BR9 441 aa4.15□□□□□ -1.75
CD44-229ENST00000528672 KCNC2Q96PR1 638 aa4.15□□□□□ -1.75
CD44-229ENST00000528672 TUBGCP5Q96RT8 1024 aa4.15□□□□□ -1.75
CD44-229ENST00000528672 ZDHHC5Q9C0B5 715 aa4.15□□□□□ -1.75
CD44-229ENST00000528672 ANLNQ9NQW6 1124 aa4.15□□□□□ -1.75
CD44-229ENST00000528672 SERPINB13Q9UIV8 391 aa4.15□□□□□ -1.75
CD44-229ENST00000528672 PMF1-BGLAPU3KQ54 211 aa4.15□□□□□ -1.75
CD44-229ENST00000528672 FRMPD2Q68DX3 1309 aaPredicted RBP4.15□□□□□ -1.75
CD44-229ENST00000528672 ANO9A1A5B4 782 aa4.14□□□□□ -1.75
CD44-229ENST00000528672 CYP7B1O75881 506 aa4.14□□□□□ -1.75
CD44-229ENST00000528672 PRPF6O94906 941 aaKnown RBP4.14□□□□□ -1.75
CD44-229ENST00000528672 PHKG2P15735 406 aa4.14□□□□□ -1.75
CD44-229ENST00000528672 PTGS1P23219 599 aa4.14□□□□□ -1.75
CD44-229ENST00000528672 SDHAP31040 664 aa4.14□□□□□ -1.75
CD44-229ENST00000528672 ZEB1P37275 1124 aaPredicted RBP4.14□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms