RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 NEK1Q96PY6 1258 aa6.28□□□□□ -1.4
CD44-225ENST00000527326 SLC4A9Q96Q91 983 aa6.28□□□□□ -1.4
CD44-225ENST00000527326 XPO6Q96QU8 1125 aaKnown RBP6.28□□□□□ -1.4
CD44-225ENST00000527326 USP28Q96RU2 1077 aa6.28□□□□□ -1.4
CD44-225ENST00000527326 DUSP9Q99956 384 aaKnown RBP6.28□□□□□ -1.4
CD44-225ENST00000527326 RTFDC1Q9BY42 306 aaPredicted RBP6.28□□□□□ -1.4
CD44-225ENST00000527326 CCDC134Q9H6E4 229 aa6.28□□□□□ -1.4
CD44-225ENST00000527326 GDF3Q9NR23 364 aa6.28□□□□□ -1.4
CD44-225ENST00000527326 TXLNGQ9NUQ3 528 aa6.28□□□□□ -1.4
CD44-225ENST00000527326 EURLQ9NYK6 297 aa6.28□□□□□ -1.4
CD44-225ENST00000527326 C6orf203Q9P0P8 240 aaPredicted RBP6.28□□□□□ -1.4
CD44-225ENST00000527326 HMG20BQ9P0W2 317 aa6.28□□□□□ -1.4
CD44-225ENST00000527326 BTBD7Q9P203 1132 aa6.28□□□□□ -1.4
CD44-225ENST00000527326 HSFX1Q9UBD0 423 aa6.28□□□□□ -1.4
CD44-225ENST00000527326 GGA1Q9UJY5 639 aa6.28□□□□□ -1.4
CD44-225ENST00000527326 MKL2Q9ULH7 1088 aa6.28□□□□□ -1.4
CD44-225ENST00000527326 SATB2Q9UPW6 733 aa6.28□□□□□ -1.4
CD44-225ENST00000527326 SSX2IPQ9Y2D8 614 aa6.28□□□□□ -1.4
CD44-225ENST00000527326 FAM32AQ9Y421 112 aaKnown RBP6.28□□□□□ -1.4
CD44-225ENST00000527326 DYNC1LI1Q9Y6G9 523 aaKnown RBP6.28□□□□□ -1.4
CD44-225ENST00000527326 TMEM94Q12767 1356 aa6.28□□□□□ -1.4
CD44-225ENST00000527326 CEP170BQ9Y4F5 1589 aaPredicted RBP6.27□□□□□ -1.41
CD44-225ENST00000527326 CLTCQ00610 1675 aaKnown RBP6.27□□□□□ -1.41
CD44-225ENST00000527326 ADGRB3O60242 1522 aa6.27□□□□□ -1.41
CD44-225ENST00000527326 CPS1P31327 1500 aa6.27□□□□□ -1.41
CD44-225ENST00000527326 A0A1W2PNR3 127 aa6.27□□□□□ -1.41
CD44-225ENST00000527326 A6NJY4 79 aa6.27□□□□□ -1.41
CD44-225ENST00000527326 TTC34A8MYJ7 566 aa6.27□□□□□ -1.41
CD44-225ENST00000527326 GOLGA8TH3BQL2 631 aa6.27□□□□□ -1.41
CD44-225ENST00000527326 HIP1O00291 1037 aa6.27□□□□□ -1.41
CD44-225ENST00000527326 CDK2AP1O14519 115 aa6.27□□□□□ -1.41
CD44-225ENST00000527326 ATXN7O15265 892 aaPredicted RBP6.27□□□□□ -1.41
CD44-225ENST00000527326 KRT86O43790 486 aa6.27□□□□□ -1.41
CD44-225ENST00000527326 ECE2O60344 883 aa6.27□□□□□ -1.41
CD44-225ENST00000527326 BBOX1O75936 387 aa6.27□□□□□ -1.41
CD44-225ENST00000527326 LCA5LO95447 670 aa6.27□□□□□ -1.41
CD44-225ENST00000527326 TFRCP02786 760 aaKnown RBP6.27□□□□□ -1.41
CD44-225ENST00000527326 KRT16P08779 473 aa6.27□□□□□ -1.41
CD44-225ENST00000527326 PABPC4LP0CB38 370 aaKnown RBP6.27□□□□□ -1.41
CD44-225ENST00000527326 GOLGA8HP0CJ92 632 aa6.27□□□□□ -1.41
CD44-225ENST00000527326 TPBGLP0DKB5 382 aa6.27□□□□□ -1.41
CD44-225ENST00000527326 VAV1P15498 845 aa6.27□□□□□ -1.41
CD44-225ENST00000527326 TCP1P17987 556 aaKnown RBP6.27□□□□□ -1.41
CD44-225ENST00000527326 FUT4P22083 530 aa6.27□□□□□ -1.41
CD44-225ENST00000527326 ERCC5P28715 1186 aaPredicted RBP6.27□□□□□ -1.41
CD44-225ENST00000527326 PRKAR2BP31323 418 aa6.27□□□□□ -1.41
CD44-225ENST00000527326 HPDP32754 393 aaPredicted RBP6.27□□□□□ -1.41
CD44-225ENST00000527326 SCNN1AP37088 669 aa6.27□□□□□ -1.41
CD44-225ENST00000527326 PBX1P40424 430 aa6.27□□□□□ -1.41
CD44-225ENST00000527326 PAFAH1B1P43034 410 aa6.27□□□□□ -1.41
CD44-225ENST00000527326 PTDSS1P48651 473 aaKnown RBP6.27□□□□□ -1.41
CD44-225ENST00000527326 CDK7P50613 346 aa6.27□□□□□ -1.41
CD44-225ENST00000527326 CCT4P50991 539 aaKnown RBP6.27□□□□□ -1.41
CD44-225ENST00000527326 PDE6CP51160 858 aa6.27□□□□□ -1.41
CD44-225ENST00000527326 CDK17Q00537 523 aa6.27□□□□□ -1.41
CD44-225ENST00000527326 RBL2Q08999 1139 aa6.27□□□□□ -1.41
CD44-225ENST00000527326 DCTN2Q13561 401 aaKnown RBP6.27□□□□□ -1.41
CD44-225ENST00000527326 RCN2Q14257 317 aa6.27□□□□□ -1.41
CD44-225ENST00000527326 KRT32Q14532 448 aa6.27□□□□□ -1.41
CD44-225ENST00000527326 KIF22Q14807 665 aa6.27□□□□□ -1.41
CD44-225ENST00000527326 R3HDM1Q15032 1099 aaKnown RBP6.27□□□□□ -1.41
CD44-225ENST00000527326 STK38Q15208 465 aa6.27□□□□□ -1.41
CD44-225ENST00000527326 NECTIN1Q15223 517 aa6.27□□□□□ -1.41
CD44-225ENST00000527326 SEPT7Q16181 437 aaKnown RBP6.27□□□□□ -1.41
CD44-225ENST00000527326 EML3Q32P44 896 aa6.27□□□□□ -1.41
CD44-225ENST00000527326 CCDC14Q49A88 953 aa6.27□□□□□ -1.41
CD44-225ENST00000527326 FAM133BQ5BKY9 247 aaKnown RBP6.27□□□□□ -1.41
CD44-225ENST00000527326 C8orf74Q6P047 294 aa6.27□□□□□ -1.41
CD44-225ENST00000527326 UBE2Q1Q7Z7E8 422 aa6.27□□□□□ -1.41
CD44-225ENST00000527326 NLRP8Q86W28 1048 aa6.27□□□□□ -1.41
CD44-225ENST00000527326 SPATA24Q86W54 205 aa6.27□□□□□ -1.41
CD44-225ENST00000527326 LONP2Q86WA8 852 aa6.27□□□□□ -1.41
CD44-225ENST00000527326 TTC30AQ86WT1 665 aa6.27□□□□□ -1.41
CD44-225ENST00000527326 ST13P4Q8IZP2 240 aaPredicted RBP6.27□□□□□ -1.41
CD44-225ENST00000527326 SLC43A3Q8NBI5 491 aa6.27□□□□□ -1.41
CD44-225ENST00000527326 CCDC110Q8TBZ0 833 aa6.27□□□□□ -1.41
CD44-225ENST00000527326 ACMSDQ8TDX5 336 aa6.27□□□□□ -1.41
CD44-225ENST00000527326 PPIL4Q8WUA2 492 aaKnown RBP eCLIP6.27□□□□□ -1.41
CD44-225ENST00000527326 NAT14Q8WUY8 206 aa6.27□□□□□ -1.41
CD44-225ENST00000527326 PRCCQ92733 491 aaPredicted RBP6.27□□□□□ -1.41
CD44-225ENST00000527326 USP6NLQ92738 828 aa6.27□□□□□ -1.41
CD44-225ENST00000527326 GATA6Q92908 595 aa6.27□□□□□ -1.41
CD44-225ENST00000527326 CLIP3Q96DZ5 547 aa6.27□□□□□ -1.41
CD44-225ENST00000527326 VPS50Q96JG6 964 aa6.27□□□□□ -1.41
CD44-225ENST00000527326 PBKQ96KB5 322 aa6.27□□□□□ -1.41
CD44-225ENST00000527326 CCDC42Q96M95 316 aa6.27□□□□□ -1.41
CD44-225ENST00000527326 TMEM237Q96Q45 408 aa6.27□□□□□ -1.41
CD44-225ENST00000527326 LRRC1Q9BTT6 524 aa6.27□□□□□ -1.41
CD44-225ENST00000527326 RPAP3Q9H6T3 665 aaPredicted RBP6.27□□□□□ -1.41
CD44-225ENST00000527326 SLTMQ9NWH9 1034 aaKnown RBP eCLIP6.27□□□□□ -1.41
CD44-225ENST00000527326 RNF14Q9UBS8 474 aa6.27□□□□□ -1.41
CD44-225ENST00000527326 PPP1R9AQ9ULJ8 1098 aa6.27□□□□□ -1.41
CD44-225ENST00000527326 AGAP1Q9UPQ3 857 aa6.27□□□□□ -1.41
CD44-225ENST00000527326 NOD1Q9Y239 953 aa6.27□□□□□ -1.41
CD44-225ENST00000527326 PLAAQ9Y263 795 aa6.27□□□□□ -1.41
CD44-225ENST00000527326 TSC22D4Q9Y3Q8 395 aa6.27□□□□□ -1.41
CD44-225ENST00000527326 TIMM22Q9Y584 194 aa6.27□□□□□ -1.41
CD44-225ENST00000527326 PCDHGA11Q9Y5H2 935 aa6.27□□□□□ -1.41
CD44-225ENST00000527326 ITSN1Q15811 1721 aa6.27□□□□□ -1.41
CD44-225ENST00000527326 ATP7AQ04656 1500 aa6.26□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms