RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), human

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-223	ENST00000526553	TCTN3	Q6NUS6	607 aa		6.57	□□□□□ -1.36
CD44-223	ENST00000526553	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	6.57	□□□□□ -1.36
CD44-223	ENST00000526553	CLEC14A	Q86T13	490 aa		6.57	□□□□□ -1.36
CD44-223	ENST00000526553	CDYL2	Q8N8U2	506 aa		6.57	□□□□□ -1.36
CD44-223	ENST00000526553	GIMAP8	Q8ND71	665 aa	Predicted RBP	6.57	□□□□□ -1.36
CD44-223	ENST00000526553	OR14K1	Q8NGZ2	314 aa		6.57	□□□□□ -1.36
CD44-223	ENST00000526553	PPP1R14C	Q8TAE6	165 aa		6.57	□□□□□ -1.36
CD44-223	ENST00000526553	RSAD2	Q8WXG1	361 aa		6.57	□□□□□ -1.36
CD44-223	ENST00000526553	GNRHR2	Q96P88	292 aa		6.57	□□□□□ -1.36
CD44-223	ENST00000526553	SLC6A15	Q9H2J7	730 aa		6.57	□□□□□ -1.36
CD44-223	ENST00000526553	DNAI1	Q9UI46	699 aa		6.57	□□□□□ -1.36
CD44-223	ENST00000526553	KCNG1	Q9UIX4	513 aa		6.57	□□□□□ -1.36
CD44-223	ENST00000526553	NUMBL	Q9Y6R0	609 aa		6.57	□□□□□ -1.36
CD44-223	ENST00000526553	SBNO2	Q9Y2G9	1366 aa		6.57	□□□□□ -1.36
CD44-223	ENST00000526553		A0A0A6YYK5	440 aa	Predicted RBP	6.56	□□□□□ -1.36
CD44-223	ENST00000526553	PRSS38	A1L453	326 aa		6.56	□□□□□ -1.36
CD44-223	ENST00000526553	SLC26A4	O43511	780 aa		6.56	□□□□□ -1.36
CD44-223	ENST00000526553	CDC14B	O60729	498 aa		6.56	□□□□□ -1.36
CD44-223	ENST00000526553	PCDH8	O95206	1070 aa		6.56	□□□□□ -1.36
CD44-223	ENST00000526553	POU3F3	P20264	500 aa	Predicted RBP	6.56	□□□□□ -1.36
CD44-223	ENST00000526553	ICAM4	Q14773	271 aa		6.56	□□□□□ -1.36
CD44-223	ENST00000526553	PRRT2	Q7Z6L0	340 aa	Predicted RBP	6.56	□□□□□ -1.36
CD44-223	ENST00000526553	RABGGTA	Q92696	567 aa		6.56	□□□□□ -1.36
CD44-223	ENST00000526553	GCDH	Q92947	438 aa	Predicted RBP	6.56	□□□□□ -1.36
CD44-223	ENST00000526553	SOX7	Q9BT81	388 aa		6.56	□□□□□ -1.36
CD44-223	ENST00000526553	C12orf65	Q9H3J6	166 aa	Known RBP	6.56	□□□□□ -1.36
CD44-223	ENST00000526553	CD248	Q9HCU0	757 aa		6.56	□□□□□ -1.36
CD44-223	ENST00000526553	TMPRSS11E	Q9UL52	423 aa		6.56	□□□□□ -1.36
CD44-223	ENST00000526553	ZFR2	Q9UPR6	939 aa	Known RBP	6.56	□□□□□ -1.36
CD44-223	ENST00000526553	SLC30A1	Q9Y6M5	507 aa		6.56	□□□□□ -1.36
CD44-223	ENST00000526553	C2orf78	A6NCI8	922 aa		6.55	□□□□□ -1.36
CD44-223	ENST00000526553	GPR39	O43194	453 aa		6.55	□□□□□ -1.36
CD44-223	ENST00000526553	FOXS1	O43638	330 aa		6.55	□□□□□ -1.36
CD44-223	ENST00000526553	RAD17	O75943	681 aa		6.55	□□□□□ -1.36
CD44-223	ENST00000526553	SEC24D	O94855	1032 aa	Predicted RBP	6.55	□□□□□ -1.36
CD44-223	ENST00000526553	FSBP	O95073	299 aa		6.55	□□□□□ -1.36
CD44-223	ENST00000526553	RPS19	P39019	145 aa	Known RBP	6.55	□□□□□ -1.36
CD44-223	ENST00000526553	ADCY7	P51828	1080 aa		6.55	□□□□□ -1.36
CD44-223	ENST00000526553	FAP	Q12884	760 aa		6.55	□□□□□ -1.36
CD44-223	ENST00000526553	SPATS2	Q86XZ4	545 aa	Known RBP	6.55	□□□□□ -1.36
CD44-223	ENST00000526553	CHST13	Q8NET6	341 aa		6.55	□□□□□ -1.36
CD44-223	ENST00000526553	ACAP3	Q96P50	834 aa		6.55	□□□□□ -1.36
CD44-223	ENST00000526553	PLA2G12B	Q9BX93	195 aa		6.55	□□□□□ -1.36
CD44-223	ENST00000526553	KRTAP3-1	Q9BYR8	98 aa		6.55	□□□□□ -1.36
CD44-223	ENST00000526553	NELFA	Q9H3P2	528 aa		6.55	□□□□□ -1.36
CD44-223	ENST00000526553	TOPORS	Q9NS56	1045 aa	Predicted RBP	6.55	□□□□□ -1.36
CD44-223	ENST00000526553	WDR3	Q9UNX4	943 aa	Known RBP eCLIP	6.55	□□□□□ -1.36
CD44-223	ENST00000526553	DAPK3	O43293	454 aa		6.54	□□□□□ -1.36
CD44-223	ENST00000526553	NRP2	O60462	931 aa		6.54	□□□□□ -1.36
CD44-223	ENST00000526553	ZNF623	O75123	536 aa		6.54	□□□□□ -1.36
CD44-223	ENST00000526553	HNRNPL	P14866	589 aa	Known RBP eCLIP	6.54	□□□□□ -1.36
CD44-223	ENST00000526553	BUD31	P41223	144 aa	Predicted RBP	6.54	□□□□□ -1.36
CD44-223	ENST00000526553	ADAM8	P78325	824 aa		6.54	□□□□□ -1.36
CD44-223	ENST00000526553	ADAM17	P78536	824 aa		6.54	□□□□□ -1.36
CD44-223	ENST00000526553	TMPRSS15	P98073	1019 aa		6.54	□□□□□ -1.36
CD44-223	ENST00000526553	TCIRG1	Q13488	830 aa		6.54	□□□□□ -1.36
CD44-223	ENST00000526553	PDCD1	Q15116	288 aa		6.54	□□□□□ -1.36
CD44-223	ENST00000526553	GAGE13	Q4V321	117 aa		6.54	□□□□□ -1.36
CD44-223	ENST00000526553	RNF219	Q5W0B1	726 aa	Predicted RBP	6.54	□□□□□ -1.36
CD44-223	ENST00000526553	IQSEC1	Q6DN90	963 aa		6.54	□□□□□ -1.36
CD44-223	ENST00000526553	UNC5B	Q8IZJ1	945 aa		6.54	□□□□□ -1.36
CD44-223	ENST00000526553	PLA2G15	Q8NCC3	412 aa		6.54	□□□□□ -1.36
CD44-223	ENST00000526553	SHCBP1	Q8NEM2	672 aa		6.54	□□□□□ -1.36
CD44-223	ENST00000526553	WDR66	Q8TBY9	1149 aa		6.54	□□□□□ -1.36
CD44-223	ENST00000526553		Q8TCH9	128 aa		6.54	□□□□□ -1.36
CD44-223	ENST00000526553	C8orf49	Q96NF6	230 aa		6.54	□□□□□ -1.36
CD44-223	ENST00000526553	C1QTNF3	Q9BXJ4	246 aa		6.54	□□□□□ -1.36
CD44-223	ENST00000526553	ANO3	Q9BYT9	981 aa		6.54	□□□□□ -1.36
CD44-223	ENST00000526553	C14orf93	Q9H972	538 aa	Known RBP	6.54	□□□□□ -1.36
CD44-223	ENST00000526553	SLTM	Q9NWH9	1034 aa	Known RBP eCLIP	6.54	□□□□□ -1.36
CD44-223	ENST00000526553	MCM8	Q9UJA3	840 aa		6.54	□□□□□ -1.36
CD44-223	ENST00000526553	RBM8A	Q9Y5S9	174 aa	Known RBP	6.54	□□□□□ -1.36
CD44-223	ENST00000526553	ADRB1	P08588	477 aa		6.53	□□□□□ -1.36
CD44-223	ENST00000526553	SELENOP	P49908	381 aa		6.53	□□□□□ -1.36
CD44-223	ENST00000526553	BPIFB4	P59827	614 aa		6.53	□□□□□ -1.36
CD44-223	ENST00000526553	ATP2C1	P98194	919 aa	Predicted RBP	6.53	□□□□□ -1.36
CD44-223	ENST00000526553	RIN1	Q13671	783 aa		6.53	□□□□□ -1.36
CD44-223	ENST00000526553	LHFPL2	Q6ZUX7	228 aa		6.53	□□□□□ -1.36
CD44-223	ENST00000526553	POLN	Q7Z5Q5	900 aa		6.53	□□□□□ -1.36
CD44-223	ENST00000526553	SLC41A1	Q8IVJ1	513 aa		6.53	□□□□□ -1.36
CD44-223	ENST00000526553	GPR135	Q8IZ08	494 aa		6.53	□□□□□ -1.36
CD44-223	ENST00000526553	FUK	Q8N0W3	1084 aa		6.53	□□□□□ -1.36
CD44-223	ENST00000526553	GAB3	Q8WWW8	586 aa		6.53	□□□□□ -1.36
CD44-223	ENST00000526553	FAM126A	Q9BYI3	521 aa	Predicted RBP	6.53	□□□□□ -1.36
CD44-223	ENST00000526553	ST6GALNAC2	Q9UJ37	374 aa		6.53	□□□□□ -1.36
CD44-223	ENST00000526553	USP18	Q9UMW8	372 aa		6.53	□□□□□ -1.36
CD44-223	ENST00000526553	MTSS1	O43312	755 aa		6.52	□□□□□ -1.37
CD44-223	ENST00000526553	CLEC2L	P0C7M8	214 aa		6.52	□□□□□ -1.37
CD44-223	ENST00000526553	VSIG10L2	P0DP72	767 aa		6.52	□□□□□ -1.37
CD44-223	ENST00000526553	GAA	P10253	952 aa		6.52	□□□□□ -1.37
CD44-223	ENST00000526553	ENPP1	P22413	925 aa		6.52	□□□□□ -1.37
CD44-223	ENST00000526553	XPA	P23025	273 aa	Predicted RBP	6.52	□□□□□ -1.37
CD44-223	ENST00000526553	PPARA	Q07869	468 aa		6.52	□□□□□ -1.37
CD44-223	ENST00000526553	FSCN1	Q16658	493 aa	Known RBP	6.52	□□□□□ -1.37
CD44-223	ENST00000526553	PITRM1	Q5JRX3	1037 aa		6.52	□□□□□ -1.37
CD44-223	ENST00000526553	CCDC62	Q6P9F0	684 aa		6.52	□□□□□ -1.37
CD44-223	ENST00000526553	LYSMD2	Q8IV50	215 aa		6.52	□□□□□ -1.37
CD44-223	ENST00000526553	OR14C36	Q8NHC7	312 aa		6.52	□□□□□ -1.37
CD44-223	ENST00000526553	ATL2	Q8NHH9	583 aa		6.52	□□□□□ -1.37
CD44-223	ENST00000526553	DVL3	Q92997	716 aa	Predicted RBP	6.52	□□□□□ -1.37

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