RNA–Protein interactions for RNA: ENST00000525469.1

CD44-218, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 705 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-218ENST00000525469 RBBP5Q15291 538 aaKnown RBP5.65□□□□□ -1.5
CD44-218ENST00000525469 PTPN14Q15678 1187 aa5.65□□□□□ -1.5
CD44-218ENST00000525469 KCNA10Q16322 511 aa5.65□□□□□ -1.5
CD44-218ENST00000525469 LEXMQ3ZCV2 418 aa5.65□□□□□ -1.5
CD44-218ENST00000525469 LRRC24Q50LG9 513 aa5.65□□□□□ -1.5
CD44-218ENST00000525469 RPS26P11Q5JNZ5 115 aaPredicted RBP5.65□□□□□ -1.5
CD44-218ENST00000525469 EXOSC6Q5RKV6 272 aaKnown RBP5.65□□□□□ -1.5
CD44-218ENST00000525469 XP32Q5T750 250 aa5.65□□□□□ -1.5
CD44-218ENST00000525469 C20orf194Q5TEA3 1177 aa5.65□□□□□ -1.5
CD44-218ENST00000525469 SYT10Q6XYQ8 523 aa5.65□□□□□ -1.5
CD44-218ENST00000525469 CLEC10AQ8IUN9 316 aa5.65□□□□□ -1.5
CD44-218ENST00000525469 FAM20CQ8IXL6 584 aa5.65□□□□□ -1.5
CD44-218ENST00000525469 ARMC10Q8N2F6 343 aa5.65□□□□□ -1.5
CD44-218ENST00000525469 CRACR2BQ8N4Y2 399 aaPredicted RBP5.65□□□□□ -1.5
CD44-218ENST00000525469 TSPYL6Q8N831 410 aa5.65□□□□□ -1.5
CD44-218ENST00000525469 C12orf50Q8NA57 414 aaPredicted RBP5.65□□□□□ -1.5
CD44-218ENST00000525469 PCSK9Q8NBP7 692 aaKnown RBP5.65□□□□□ -1.5
CD44-218ENST00000525469 SMG8Q8ND04 991 aaKnown RBP5.65□□□□□ -1.5
CD44-218ENST00000525469 LPIN2Q92539 896 aa5.65□□□□□ -1.5
CD44-218ENST00000525469 ATOH1Q92858 354 aaPredicted RBP5.65□□□□□ -1.5
CD44-218ENST00000525469 DBNDD2Q9BQY9 259 aa5.65□□□□□ -1.5
CD44-218ENST00000525469 TMPRSS13Q9BYE2 586 aa5.65□□□□□ -1.5
CD44-218ENST00000525469 GBP3Q9H0R5 595 aa5.65□□□□□ -1.5
CD44-218ENST00000525469 HIPK3Q9H422 1215 aa5.65□□□□□ -1.5
CD44-218ENST00000525469 UBE2ZQ9H832 354 aaPredicted RBP5.65□□□□□ -1.5
CD44-218ENST00000525469 SPC25Q9HBM1 224 aa5.65□□□□□ -1.5
CD44-218ENST00000525469 SPATS2LQ9NUQ6 558 aaKnown RBP5.65□□□□□ -1.5
CD44-218ENST00000525469 LMCD1Q9NZU5 365 aa5.65□□□□□ -1.5
CD44-218ENST00000525469 PI4KBQ9UBF8 816 aa5.65□□□□□ -1.5
CD44-218ENST00000525469 CLIP2Q9UDT6 1046 aa5.65□□□□□ -1.5
CD44-218ENST00000525469 ABCF2Q9UG63 623 aa5.65□□□□□ -1.5
CD44-218ENST00000525469 CNPY2Q9Y2B0 182 aa5.65□□□□□ -1.5
CD44-218ENST00000525469 SH3BP1Q9Y3L3 701 aa5.65□□□□□ -1.5
CD44-218ENST00000525469 ATXN2Q99700 1313 aaKnown RBP5.65□□□□□ -1.51
CD44-218ENST00000525469 MCM3APO60318 1980 aa5.64□□□□□ -1.51
CD44-218ENST00000525469 TRANK1O15050 2925 aa5.64□□□□□ -1.51
CD44-218ENST00000525469 METTL12A8MUP2 240 aa5.64□□□□□ -1.51
CD44-218ENST00000525469 ARVCFO00192 962 aa5.64□□□□□ -1.51
CD44-218ENST00000525469 PRPF40AO75400 957 aaKnown RBP5.64□□□□□ -1.51
CD44-218ENST00000525469 KRT37O76014 449 aa5.64□□□□□ -1.51
CD44-218ENST00000525469 MAP4K4O95819 1239 aaPredicted RBP5.64□□□□□ -1.51
CD44-218ENST00000525469 B3GALT4O96024 378 aa5.64□□□□□ -1.51
CD44-218ENST00000525469 LDHCP07864 332 aa5.64□□□□□ -1.51
CD44-218ENST00000525469 CCDC192P0DO97 292 aa5.64□□□□□ -1.51
CD44-218ENST00000525469 FCER1AP12319 257 aa5.64□□□□□ -1.51
CD44-218ENST00000525469 BMP3P12645 472 aa5.64□□□□□ -1.51
CD44-218ENST00000525469 ACTN1P12814 892 aa5.64□□□□□ -1.51
CD44-218ENST00000525469 IL9P15248 144 aa5.64□□□□□ -1.51
CD44-218ENST00000525469 H2AFXP16104 143 aaPredicted RBP5.64□□□□□ -1.51
CD44-218ENST00000525469 MX1P20591 662 aa5.64□□□□□ -1.51
CD44-218ENST00000525469 ITPKAP23677 461 aa5.64□□□□□ -1.51
CD44-218ENST00000525469 PREPP48147 710 aa5.64□□□□□ -1.51
CD44-218ENST00000525469 USP11P51784 963 aa5.64□□□□□ -1.51
CD44-218ENST00000525469 USP14P54578 494 aa5.64□□□□□ -1.51
CD44-218ENST00000525469 CCL23P55773 120 aa5.64□□□□□ -1.51
CD44-218ENST00000525469 RWDD2BP57060 319 aa5.64□□□□□ -1.51
CD44-218ENST00000525469 CORO7P57737 925 aa5.64□□□□□ -1.51
CD44-218ENST00000525469 GSDMDP57764 484 aa5.64□□□□□ -1.51
CD44-218ENST00000525469 GRB10Q13322 594 aa5.64□□□□□ -1.51
CD44-218ENST00000525469 PLS1Q14651 629 aa5.64□□□□□ -1.51
CD44-218ENST00000525469 TPD52L1Q16890 204 aaPredicted RBP5.64□□□□□ -1.51
CD44-218ENST00000525469 TWISTNBQ3B726 338 aaPredicted RBP5.64□□□□□ -1.51
CD44-218ENST00000525469 HSP90B2PQ58FF3 399 aa5.64□□□□□ -1.51
CD44-218ENST00000525469 GBP6Q6ZN66 633 aa5.64□□□□□ -1.51
CD44-218ENST00000525469 CATSPERGQ6ZRH7 1159 aa5.64□□□□□ -1.51
CD44-218ENST00000525469 EP400NLQ6ZTU2 488 aa5.64□□□□□ -1.51
CD44-218ENST00000525469 BEND4Q6ZU67 534 aa5.64□□□□□ -1.51
CD44-218ENST00000525469 APLFQ8IW19 511 aaPredicted RBP5.64□□□□□ -1.51
CD44-218ENST00000525469 PRSS33Q8NF86 280 aa5.64□□□□□ -1.51
CD44-218ENST00000525469 MAML3Q96JK9 1138 aa5.64□□□□□ -1.51
CD44-218ENST00000525469 FAM83CQ9BQN1 747 aa5.64□□□□□ -1.51
CD44-218ENST00000525469 DHX36Q9H2U1 1008 aaKnown RBP5.64□□□□□ -1.51
CD44-218ENST00000525469 C7orf69Q9H7B7 122 aa5.64□□□□□ -1.51
CD44-218ENST00000525469 BATF3Q9NR55 127 aa5.64□□□□□ -1.51
CD44-218ENST00000525469 HOMER3Q9NSC5 361 aa5.64□□□□□ -1.51
CD44-218ENST00000525469 BTBD7Q9P203 1132 aa5.64□□□□□ -1.51
CD44-218ENST00000525469 CPSF2Q9P2I0 782 aaKnown RBP5.64□□□□□ -1.51
CD44-218ENST00000525469 GAKO14976 1311 aa5.64□□□□□ -1.51
CD44-218ENST00000525469 SALL1Q9NSC2 1324 aa5.64□□□□□ -1.51
CD44-218ENST00000525469 RFX7Q2KHR2 1363 aa5.64□□□□□ -1.51
CD44-218ENST00000525469 MYH1P12882 1939 aa5.64□□□□□ -1.51
CD44-218ENST00000525469 TRIP12Q14669 1992 aaPredicted RBP5.64□□□□□ -1.51
CD44-218ENST00000525469 SCN5AQ14524 2016 aa5.64□□□□□ -1.51
CD44-218ENST00000525469 TECTAO75443 2155 aa5.63□□□□□ -1.51
CD44-218ENST00000525469 COL4A4P53420 1690 aaPredicted RBP5.63□□□□□ -1.51
CD44-218ENST00000525469 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP5.63□□□□□ -1.51
CD44-218ENST00000525469 ANKRD33BA6NCL7 494 aa5.63□□□□□ -1.51
CD44-218ENST00000525469 GOLGA6L9A6NEM1 432 aa5.63□□□□□ -1.51
CD44-218ENST00000525469 EPOPA6NHQ4 379 aa5.63□□□□□ -1.51
CD44-218ENST00000525469 IPO8O15397 1037 aaKnown RBP5.63□□□□□ -1.51
CD44-218ENST00000525469 COBLO75128 1261 aa5.63□□□□□ -1.51
CD44-218ENST00000525469 CDC45O75419 566 aa5.63□□□□□ -1.51
CD44-218ENST00000525469 ERLIN1O75477 346 aa5.63□□□□□ -1.51
CD44-218ENST00000525469 IGHA2P01877 340 aa5.63□□□□□ -1.51
CD44-218ENST00000525469 PFKMP08237 780 aa5.63□□□□□ -1.51
CD44-218ENST00000525469 C6orf222P0C671 652 aaPredicted RBP5.63□□□□□ -1.51
CD44-218ENST00000525469 FGFR2P21802 821 aa5.63□□□□□ -1.51
CD44-218ENST00000525469 PRPHP41219 470 aa5.63□□□□□ -1.51
CD44-218ENST00000525469 GRIA4P48058 902 aa5.63□□□□□ -1.51
CD44-218ENST00000525469 UBE2HP62256 183 aa5.63□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms