RNA–Protein interactions for RNA: ENST00000516665.1

RNU6-539P-201, Transcript of RNA, U6 small nuclear 539, pseudogene, humanhuman

BASIC

Gene RNU6-539P, Length 103 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-539P-201ENST00000516665 CEP85LQ5SZL2 805 aa0.37□□□□□ -2.35
RNU6-539P-201ENST00000516665 TDRD10Q5VZ19 366 aaKnown RBP0.37□□□□□ -2.35
RNU6-539P-201ENST00000516665 E4F1Q66K89 784 aaPredicted RBP0.37□□□□□ -2.35
RNU6-539P-201ENST00000516665 RBM12BQ8IXT5 1001 aaKnown RBP0.37□□□□□ -2.35
RNU6-539P-201ENST00000516665 ST8SIA2Q92186 375 aa0.37□□□□□ -2.35
RNU6-539P-201ENST00000516665 ALKBH8Q96BT7 664 aaKnown RBP0.37□□□□□ -2.35
RNU6-539P-201ENST00000516665 ATG4CQ96DT6 458 aa0.37□□□□□ -2.35
RNU6-539P-201ENST00000516665 CALR3Q96L12 384 aaKnown RBP0.37□□□□□ -2.35
RNU6-539P-201ENST00000516665 CAMKK2Q96RR4 588 aa0.37□□□□□ -2.35
RNU6-539P-201ENST00000516665 SETDB2Q96T68 719 aa0.37□□□□□ -2.35
RNU6-539P-201ENST00000516665 TCF25Q9BQ70 676 aa0.37□□□□□ -2.35
RNU6-539P-201ENST00000516665 DNMT3BQ9UBC3 853 aaKnown RBP0.37□□□□□ -2.35
RNU6-539P-201ENST00000516665 MAP3K2Q9Y2U5 619 aa0.37□□□□□ -2.35
RNU6-539P-201ENST00000516665 ZNF451Q9Y4E5 1061 aa0.37□□□□□ -2.35
RNU6-539P-201ENST00000516665 A0A1B0GU03 582 aa0.36□□□□□ -2.35
RNU6-539P-201ENST00000516665 KCNU1A8MYU2 1149 aa0.36□□□□□ -2.35
RNU6-539P-201ENST00000516665 NDUFB5O43674 189 aa0.36□□□□□ -2.35
RNU6-539P-201ENST00000516665 USP17L7P0C7H9 530 aa0.36□□□□□ -2.35
RNU6-539P-201ENST00000516665 PLS3P13797 630 aa0.36□□□□□ -2.35
RNU6-539P-201ENST00000516665 CD247P20963 164 aa0.36□□□□□ -2.35
RNU6-539P-201ENST00000516665 CCDC85BQ15834 202 aaPredicted RBP0.36□□□□□ -2.35
RNU6-539P-201ENST00000516665 PAN2Q504Q3 1202 aaKnown RBP0.36□□□□□ -2.35
RNU6-539P-201ENST00000516665 AXDND1Q5T1B0 1012 aaPredicted RBP0.36□□□□□ -2.35
RNU6-539P-201ENST00000516665 MFSD5Q6N075 450 aa0.36□□□□□ -2.35
RNU6-539P-201ENST00000516665 PPFIBP1Q86W92 1011 aa0.36□□□□□ -2.35
RNU6-539P-201ENST00000516665 ZNF485Q8NCK3 441 aa0.36□□□□□ -2.35
RNU6-539P-201ENST00000516665 PPIL4Q8WUA2 492 aaKnown RBP eCLIP0.36□□□□□ -2.35
RNU6-539P-201ENST00000516665 NKD2Q969F2 451 aaPredicted RBP0.36□□□□□ -2.35
RNU6-539P-201ENST00000516665 MMP19Q99542 508 aa0.36□□□□□ -2.35
RNU6-539P-201ENST00000516665 HEPHQ9BQS7 1158 aa0.36□□□□□ -2.35
RNU6-539P-201ENST00000516665 DCTN5Q9BTE1 182 aa0.36□□□□□ -2.35
RNU6-539P-201ENST00000516665 RNF181Q9P0P0 153 aa0.36□□□□□ -2.35
RNU6-539P-201ENST00000516665 ENTPD2Q9Y5L3 495 aa0.36□□□□□ -2.35
RNU6-539P-201ENST00000516665 LACTBL1A8MY62 500 aa0.35□□□□□ -2.35
RNU6-539P-201ENST00000516665 CDKL5O76039 1030 aa0.35□□□□□ -2.35
RNU6-539P-201ENST00000516665 STC2O76061 302 aa0.35□□□□□ -2.35
RNU6-539P-201ENST00000516665 ABL1P00519 1130 aa0.35□□□□□ -2.35
RNU6-539P-201ENST00000516665 LTBRP36941 435 aa0.35□□□□□ -2.35
RNU6-539P-201ENST00000516665 BCL6P41182 706 aa0.35□□□□□ -2.35
RNU6-539P-201ENST00000516665 HAP1P54257 671 aaPredicted RBP0.35□□□□□ -2.35
RNU6-539P-201ENST00000516665 ARHGAP4P98171 946 aa0.35□□□□□ -2.35
RNU6-539P-201ENST00000516665 ANKRD39Q53RE8 183 aa0.35□□□□□ -2.35
RNU6-539P-201ENST00000516665 CEP78Q5JTW2 689 aa0.35□□□□□ -2.35
RNU6-539P-201ENST00000516665 TSTD2Q5T7W7 516 aa0.35□□□□□ -2.35
RNU6-539P-201ENST00000516665 CAPRIN2Q6IMN6 1127 aaKnown RBP0.35□□□□□ -2.35
RNU6-539P-201ENST00000516665 KRTAP5-10Q6L8G5 202 aa0.35□□□□□ -2.35
RNU6-539P-201ENST00000516665 DPP8Q6V1X1 898 aaPredicted RBP0.35□□□□□ -2.35
RNU6-539P-201ENST00000516665 NLRC3Q7RTR2 1065 aa0.35□□□□□ -2.35
RNU6-539P-201ENST00000516665 OTOP2Q7RTS6 562 aa0.35□□□□□ -2.35
RNU6-539P-201ENST00000516665 GPR149Q86SP6 731 aa0.35□□□□□ -2.35
RNU6-539P-201ENST00000516665 NANOGP1Q8N7R0 232 aa0.35□□□□□ -2.35
RNU6-539P-201ENST00000516665 ANKRD53Q8N9V6 530 aa0.35□□□□□ -2.35
RNU6-539P-201ENST00000516665 PHOSPHO1Q8TCT1 267 aa0.35□□□□□ -2.35
RNU6-539P-201ENST00000516665 GATAD2BQ8WXI9 593 aa0.35□□□□□ -2.35
RNU6-539P-201ENST00000516665 ZPBPQ9BS86 351 aa0.35□□□□□ -2.35
RNU6-539P-201ENST00000516665 SMOC1Q9H4F8 434 aa0.35□□□□□ -2.35
RNU6-539P-201ENST00000516665 IL23AQ9NPF7 189 aa0.35□□□□□ -2.35
RNU6-539P-201ENST00000516665 SUCOQ9UBS9 1254 aaKnown RBP0.35□□□□□ -2.35
RNU6-539P-201ENST00000516665 EGFL7Q9UHF1 273 aa0.35□□□□□ -2.35
RNU6-539P-201ENST00000516665 ADAM21Q9UKJ8 722 aa0.35□□□□□ -2.35
RNU6-539P-201ENST00000516665 COA3Q9Y2R0 106 aaPredicted RBP0.35□□□□□ -2.35
RNU6-539P-201ENST00000516665 CTDP1Q9Y5B0 961 aaPredicted RBP0.35□□□□□ -2.35
RNU6-539P-201ENST00000516665 WNT6Q9Y6F9 365 aa0.35□□□□□ -2.35
RNU6-539P-201ENST00000516665 FAM86C2PA6NEL3 165 aa0.34□□□□□ -2.36
RNU6-539P-201ENST00000516665 MARCH11A6NNE9 402 aa0.34□□□□□ -2.36
RNU6-539P-201ENST00000516665 LEFTY2O00292 366 aa0.34□□□□□ -2.36
RNU6-539P-201ENST00000516665 PPP6CO00743 305 aa0.34□□□□□ -2.36
RNU6-539P-201ENST00000516665 SLC27A2O14975 620 aa0.34□□□□□ -2.36
RNU6-539P-201ENST00000516665 LTFP02788 710 aa0.34□□□□□ -2.36
RNU6-539P-201ENST00000516665 VEGFCP49767 419 aa0.34□□□□□ -2.36
RNU6-539P-201ENST00000516665 RPL11P62913 178 aaKnown RBP0.34□□□□□ -2.36
RNU6-539P-201ENST00000516665 ZXDBP98169 803 aa0.34□□□□□ -2.36
RNU6-539P-201ENST00000516665 LARP1BQ659C4 914 aaKnown RBP0.34□□□□□ -2.36
RNU6-539P-201ENST00000516665 IQSEC1Q6DN90 963 aa0.34□□□□□ -2.36
RNU6-539P-201ENST00000516665 CCDC84Q86UT8 332 aaPredicted RBP0.34□□□□□ -2.36
RNU6-539P-201ENST00000516665 NDC1Q9BTX1 674 aa0.34□□□□□ -2.36
RNU6-539P-201ENST00000516665 CPEB1Q9BZB8 566 aaKnown RBP0.34□□□□□ -2.36
RNU6-539P-201ENST00000516665 PRSS22Q9GZN4 317 aa0.34□□□□□ -2.36
RNU6-539P-201ENST00000516665 GPRC5CQ9NQ84 441 aa0.34□□□□□ -2.36
RNU6-539P-201ENST00000516665 TRNAU1APQ9NX07 287 aaKnown RBP0.34□□□□□ -2.36
RNU6-539P-201ENST00000516665 FBXO10Q9UK96 956 aa0.34□□□□□ -2.36
RNU6-539P-201ENST00000516665 ICAM5Q9UMF0 924 aa0.34□□□□□ -2.36
RNU6-539P-201ENST00000516665 PNMA6FA0A0J9YX94 578 aa0.33□□□□□ -2.36
RNU6-539P-201ENST00000516665 GNAT2P19087 354 aa0.33□□□□□ -2.36
RNU6-539P-201ENST00000516665 CBLP22681 906 aa0.33□□□□□ -2.36
RNU6-539P-201ENST00000516665 CERS1P27544 350 aa0.33□□□□□ -2.36
RNU6-539P-201ENST00000516665 CSRP3P50461 194 aa0.33□□□□□ -2.36
RNU6-539P-201ENST00000516665 RNASE9P60153 205 aaKnown RBP0.33□□□□□ -2.36
RNU6-539P-201ENST00000516665 SRPK2P78362 688 aaKnown RBP0.33□□□□□ -2.36
RNU6-539P-201ENST00000516665 RBM10P98175 930 aaKnown RBP0.33□□□□□ -2.36
RNU6-539P-201ENST00000516665 RESTQ13127 1097 aa0.33□□□□□ -2.36
RNU6-539P-201ENST00000516665 INPP5JQ15735 1006 aaPredicted RBP0.33□□□□□ -2.36
RNU6-539P-201ENST00000516665 NEUROD2Q15784 382 aa0.33□□□□□ -2.36
RNU6-539P-201ENST00000516665 Q4G0T1 1027 aa0.33□□□□□ -2.36
RNU6-539P-201ENST00000516665 TMEM200BQ69YZ2 307 aa0.33□□□□□ -2.36
RNU6-539P-201ENST00000516665 ZNF324BQ6AW86 544 aaPredicted RBP0.33□□□□□ -2.36
RNU6-539P-201ENST00000516665 Q7L0L9 218 aa0.33□□□□□ -2.36
RNU6-539P-201ENST00000516665 REC114Q7Z4M0 266 aa0.33□□□□□ -2.36
RNU6-539P-201ENST00000516665 PLXDC1Q8IUK5 500 aa0.33□□□□□ -2.36
RNU6-539P-201ENST00000516665 SYT12Q8IV01 421 aa0.33□□□□□ -2.36
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms