RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 NOBOXO60393 691 aa6.67□□□□□ -1.34
NUP54-218ENST00000515460 APPP05067 770 aa6.67□□□□□ -1.34
NUP54-218ENST00000515460 PLS3P13797 630 aa6.67□□□□□ -1.34
NUP54-218ENST00000515460 INSRRP14616 1297 aa6.67□□□□□ -1.34
NUP54-218ENST00000515460 DNAJA1P31689 397 aaKnown RBP6.67□□□□□ -1.34
NUP54-218ENST00000515460 RFC4P35249 363 aa6.67□□□□□ -1.34
NUP54-218ENST00000515460 ETFBP38117 255 aa6.67□□□□□ -1.34
NUP54-218ENST00000515460 EEPD1Q7L9B9 569 aa6.67□□□□□ -1.34
NUP54-218ENST00000515460 CPA5Q8WXQ8 436 aa6.67□□□□□ -1.34
NUP54-218ENST00000515460 MRGPRX3Q96LB0 322 aa6.67□□□□□ -1.34
NUP54-218ENST00000515460 GUCD1Q96NT3 240 aa6.67□□□□□ -1.34
NUP54-218ENST00000515460 SYT3Q9BQG1 590 aa6.67□□□□□ -1.34
NUP54-218ENST00000515460 ZNF408Q9H9D4 720 aa6.67□□□□□ -1.34
NUP54-218ENST00000515460 SPATA6Q9NWH7 488 aaPredicted RBP6.67□□□□□ -1.34
NUP54-218ENST00000515460 MARCH2Q9P0N8 246 aa6.67□□□□□ -1.34
NUP54-218ENST00000515460 NTMQ9P121 344 aa6.67□□□□□ -1.34
NUP54-218ENST00000515460 ZNF541Q9H0D2 1346 aa6.67□□□□□ -1.34
NUP54-218ENST00000515460 KDRP35968 1356 aa6.67□□□□□ -1.34
NUP54-218ENST00000515460 NCOR1O75376 2440 aa6.67□□□□□ -1.34
NUP54-218ENST00000515460 AGRPO00253 132 aa6.66□□□□□ -1.34
NUP54-218ENST00000515460 MAFGO15525 162 aa6.66□□□□□ -1.34
NUP54-218ENST00000515460 THBDP07204 575 aa6.66□□□□□ -1.34
NUP54-218ENST00000515460 HSP90AB1P08238 724 aaKnown RBP6.66□□□□□ -1.34
NUP54-218ENST00000515460 HSPA5P11021 654 aaKnown RBP6.66□□□□□ -1.34
NUP54-218ENST00000515460 TM4SF1P30408 202 aa6.66□□□□□ -1.34
NUP54-218ENST00000515460 HOXC12P31275 282 aa6.66□□□□□ -1.34
NUP54-218ENST00000515460 MTHFSP49914 203 aa6.66□□□□□ -1.34
NUP54-218ENST00000515460 ZXDCQ2QGD7 858 aaPredicted RBP6.66□□□□□ -1.34
NUP54-218ENST00000515460 AMOTQ4VCS5 1084 aa6.66□□□□□ -1.34
NUP54-218ENST00000515460 CC2D1BQ5T0F9 858 aaKnown RBP6.66□□□□□ -1.34
NUP54-218ENST00000515460 E4F1Q66K89 784 aaPredicted RBP6.66□□□□□ -1.34
NUP54-218ENST00000515460 MBLAC2Q68D91 279 aa6.66□□□□□ -1.34
NUP54-218ENST00000515460 ZNF530Q6P9A1 599 aaPredicted RBP6.66□□□□□ -1.34
NUP54-218ENST00000515460 HHIPL2Q6UWX4 724 aa6.66□□□□□ -1.34
NUP54-218ENST00000515460 TTLL7Q6ZT98 887 aa6.66□□□□□ -1.34
NUP54-218ENST00000515460 PNMA8AQ86V59 439 aaPredicted RBP6.66□□□□□ -1.34
NUP54-218ENST00000515460 SLC43A3Q8NBI5 491 aa6.66□□□□□ -1.34
NUP54-218ENST00000515460 BORCS6Q96GS4 357 aa6.66□□□□□ -1.34
NUP54-218ENST00000515460 EPN3Q9H201 632 aa6.66□□□□□ -1.34
NUP54-218ENST00000515460 STAP2Q9UGK3 403 aa6.66□□□□□ -1.34
NUP54-218ENST00000515460 SRP68Q9UHB9 627 aaKnown RBP6.66□□□□□ -1.34
NUP54-218ENST00000515460 CFAP54Q96N23 3096 aa6.66□□□□□ -1.34
NUP54-218ENST00000515460 AKAP11Q9UKA4 1901 aa6.66□□□□□ -1.34
NUP54-218ENST00000515460 RBBP6Q7Z6E9 1792 aaKnown RBP6.65□□□□□ -1.34
NUP54-218ENST00000515460 B2RBV5 119 aa6.65□□□□□ -1.34
NUP54-218ENST00000515460 CPP00450 1065 aa6.65□□□□□ -1.34
NUP54-218ENST00000515460 SNRPB2P08579 225 aaKnown RBP6.65□□□□□ -1.34
NUP54-218ENST00000515460 CYP2C8P10632 490 aa6.65□□□□□ -1.34
NUP54-218ENST00000515460 IL13P35225 146 aa6.65□□□□□ -1.34
NUP54-218ENST00000515460 CRKLP46109 303 aaKnown RBP6.65□□□□□ -1.34
NUP54-218ENST00000515460 DDR1Q08345 913 aa6.65□□□□□ -1.34
NUP54-218ENST00000515460 RALBP1Q15311 655 aa6.65□□□□□ -1.34
NUP54-218ENST00000515460 SULT6B1Q6IMI4 303 aa6.65□□□□□ -1.34
NUP54-218ENST00000515460 ZNF227Q86WZ6 799 aa6.65□□□□□ -1.34
NUP54-218ENST00000515460 MCF2L2Q86YR7 1114 aa6.65□□□□□ -1.34
NUP54-218ENST00000515460 DCP2Q8IU60 420 aaKnown RBP6.65□□□□□ -1.34
NUP54-218ENST00000515460 BTN2A2Q8WVV5 523 aa6.65□□□□□ -1.34
NUP54-218ENST00000515460 CCDC140Q96MF4 163 aa6.65□□□□□ -1.34
NUP54-218ENST00000515460 GPR20Q99678 358 aa6.65□□□□□ -1.34
NUP54-218ENST00000515460 LGR4Q9BXB1 951 aa6.65□□□□□ -1.34
NUP54-218ENST00000515460 LNPKQ9C0E8 428 aa6.65□□□□□ -1.34
NUP54-218ENST00000515460 RRAGDQ9NQL2 400 aaPredicted RBP6.65□□□□□ -1.34
NUP54-218ENST00000515460 GEMIN8Q9NWZ8 242 aaKnown RBP6.65□□□□□ -1.34
NUP54-218ENST00000515460 EPG5Q9HCE0 2579 aa6.65□□□□□ -1.34
NUP54-218ENST00000515460 POLRMTO00411 1230 aaKnown RBP6.64□□□□□ -1.35
NUP54-218ENST00000515460 MYO1BO43795 1136 aa6.64□□□□□ -1.35
NUP54-218ENST00000515460 SMARCA5O60264 1052 aaPredicted RBP6.64□□□□□ -1.35
NUP54-218ENST00000515460 ITGAVP06756 1048 aa6.64□□□□□ -1.35
NUP54-218ENST00000515460 GTF2A2P52657 109 aa6.64□□□□□ -1.35
NUP54-218ENST00000515460 KCNAB2Q13303 367 aa6.64□□□□□ -1.35
NUP54-218ENST00000515460 PUM1Q14671 1186 aaKnown RBP eCLIP6.64□□□□□ -1.35
NUP54-218ENST00000515460 STK32CQ86UX6 486 aa6.64□□□□□ -1.35
NUP54-218ENST00000515460 MORC1Q86VD1 984 aa6.64□□□□□ -1.35
NUP54-218ENST00000515460 ZNF761Q86XN6 746 aaPredicted RBP6.64□□□□□ -1.35
NUP54-218ENST00000515460 FAM26EQ8N5C1 309 aa6.64□□□□□ -1.35
NUP54-218ENST00000515460 PLEKHO2Q8TD55 490 aa6.64□□□□□ -1.35
NUP54-218ENST00000515460 GORASP1Q9BQQ3 440 aa6.64□□□□□ -1.35
NUP54-218ENST00000515460 AP5M1Q9H0R1 490 aa6.64□□□□□ -1.35
NUP54-218ENST00000515460 MAP2P11137 1827 aaKnown RBP6.64□□□□□ -1.35
NUP54-218ENST00000515460 E9PSI1 815 aa6.63□□□□□ -1.35
NUP54-218ENST00000515460 MEFVO15553 781 aaPredicted RBP6.63□□□□□ -1.35
NUP54-218ENST00000515460 C8BP07358 591 aa6.63□□□□□ -1.35
NUP54-218ENST00000515460 ANAPC15P60006 121 aa6.63□□□□□ -1.35
NUP54-218ENST00000515460 RPL11P62913 178 aaKnown RBP6.63□□□□□ -1.35
NUP54-218ENST00000515460 SLC39A6Q13433 755 aa6.63□□□□□ -1.35
NUP54-218ENST00000515460 INF2Q27J81 1249 aa6.63□□□□□ -1.35
NUP54-218ENST00000515460 C1orf141Q5JVX7 400 aa6.63□□□□□ -1.35
NUP54-218ENST00000515460 DNTTIP2Q5QJE6 756 aaKnown RBP6.63□□□□□ -1.35
NUP54-218ENST00000515460 CD300LDQ6UXZ3 194 aa6.63□□□□□ -1.35
NUP54-218ENST00000515460 DLK2Q6UY11 383 aa6.63□□□□□ -1.35
NUP54-218ENST00000515460 DNAJC10Q8IXB1 793 aa6.63□□□□□ -1.35
NUP54-218ENST00000515460 GPATCH11Q8N954 259 aa6.63□□□□□ -1.35
NUP54-218ENST00000515460 NPLOC4Q8TAT6 608 aa6.63□□□□□ -1.35
NUP54-218ENST00000515460 DIO2Q92813 273 aa6.63□□□□□ -1.35
NUP54-218ENST00000515460 GMLQ99445 158 aa6.63□□□□□ -1.35
NUP54-218ENST00000515460 TSPYL1Q9H0U9 437 aa6.63□□□□□ -1.35
NUP54-218ENST00000515460 CDH23Q9H251 3354 aa6.63□□□□□ -1.35
NUP54-218ENST00000515460 USP42Q9H9J4 1324 aaKnown RBP6.63□□□□□ -1.35
NUP54-218ENST00000515460 PALD1Q9ULE6 856 aa6.63□□□□□ -1.35
NUP54-218ENST00000515460 CFAP47Q6ZTR5 3102 aa6.62□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms