RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 FBXO33Q7Z6M2 555 aa13.59□□□□□ -0.23
USP53-209ENST00000514665 DPP9Q86TI2 863 aa13.59□□□□□ -0.23
USP53-209ENST00000514665 GABBR1Q9UBS5 961 aa13.59□□□□□ -0.23
USP53-209ENST00000514665 DIP2CQ9Y2E4 1556 aa13.59□□□□□ -0.23
USP53-209ENST00000514665 PRPSAP2O60256 369 aa13.59□□□□□ -0.23
USP53-209ENST00000514665 PLS3P13797 630 aa13.59□□□□□ -0.23
USP53-209ENST00000514665 GALCP54803 685 aa13.59□□□□□ -0.23
USP53-209ENST00000514665 CCDC137Q6PK04 289 aaKnown RBP13.59□□□□□ -0.23
USP53-209ENST00000514665 MCPH1Q8NEM0 835 aa13.59□□□□□ -0.23
USP53-209ENST00000514665 NRXN1Q9ULB1 1477 aa13.59□□□□□ -0.23
USP53-209ENST00000514665 TARSL2A2RTX5 802 aaKnown RBP13.58□□□□□ -0.24
USP53-209ENST00000514665 TRIM66O15016 1216 aa13.58□□□□□ -0.24
USP53-209ENST00000514665 ZBTB22O15209 634 aa13.58□□□□□ -0.24
USP53-209ENST00000514665 NDUFB10O96000 172 aa13.58□□□□□ -0.24
USP53-209ENST00000514665 SOX5P35711 763 aa13.58□□□□□ -0.24
USP53-209ENST00000514665 SEMA3FQ13275 785 aa13.58□□□□□ -0.24
USP53-209ENST00000514665 NCAPHQ15003 741 aa13.58□□□□□ -0.24
USP53-209ENST00000514665 CYFIP1Q7L576 1253 aa13.58□□□□□ -0.24
USP53-209ENST00000514665 MCUQ8NE86 351 aa13.58□□□□□ -0.24
USP53-209ENST00000514665 MIPOL1Q8TD10 442 aa13.58□□□□□ -0.24
USP53-209ENST00000514665 HSPH1Q92598 858 aa13.58□□□□□ -0.24
USP53-209ENST00000514665 MAP3K14Q99558 947 aa13.58□□□□□ -0.24
USP53-209ENST00000514665 REEP2Q9BRK0 252 aa13.58□□□□□ -0.24
USP53-209ENST00000514665 RNF146Q9NTX7 359 aa13.58□□□□□ -0.24
USP53-209ENST00000514665 SEL1LQ9UBV2 794 aa13.58□□□□□ -0.24
USP53-209ENST00000514665 DUSP10Q9Y6W6 482 aa13.58□□□□□ -0.24
USP53-209ENST00000514665 ZC3H13Q5T200 1668 aaKnown RBP13.58□□□□□ -0.24
USP53-209ENST00000514665 PDXKO00764 312 aa13.58□□□□□ -0.24
USP53-209ENST00000514665 GSTA1P08263 222 aa13.58□□□□□ -0.24
USP53-209ENST00000514665 GSTA2P09210 222 aa13.58□□□□□ -0.24
USP53-209ENST00000514665 BRAFP15056 766 aa13.58□□□□□ -0.24
USP53-209ENST00000514665 SWSAP1Q6NVH7 229 aa13.58□□□□□ -0.24
USP53-209ENST00000514665 RAPH1Q70E73 1250 aa13.58□□□□□ -0.24
USP53-209ENST00000514665 FRMD5Q7Z6J6 570 aa13.58□□□□□ -0.24
USP53-209ENST00000514665 TMEM35BQ8NCS4 154 aa13.58□□□□□ -0.24
USP53-209ENST00000514665 SLC38A10Q9HBR0 1119 aa13.58□□□□□ -0.24
USP53-209ENST00000514665 PCSK1NQ9UHG2 260 aa13.58□□□□□ -0.24
USP53-209ENST00000514665 INTUQ9ULD6 942 aa13.58□□□□□ -0.24
USP53-209ENST00000514665 FHOD1Q9Y613 1164 aa13.58□□□□□ -0.24
USP53-209ENST00000514665 SSU72P8A0A1W2PR75 194 aa13.58□□□□□ -0.24
USP53-209ENST00000514665 TTI1O43156 1089 aa13.58□□□□□ -0.24
USP53-209ENST00000514665 TOM1L1O75674 476 aa13.58□□□□□ -0.24
USP53-209ENST00000514665 EYA4O95677 639 aa13.58□□□□□ -0.24
USP53-209ENST00000514665 ZBED1O96006 694 aa13.58□□□□□ -0.24
USP53-209ENST00000514665 KLRC1P26715 233 aa13.58□□□□□ -0.24
USP53-209ENST00000514665 ECE1P42892 770 aa13.58□□□□□ -0.24
USP53-209ENST00000514665 ERVK-24P63145 666 aa13.58□□□□□ -0.24
USP53-209ENST00000514665 SH2D4BQ5SQS7 431 aa13.58□□□□□ -0.24
USP53-209ENST00000514665 KRT39Q6A163 491 aa13.58□□□□□ -0.24
USP53-209ENST00000514665 PCGF5Q86SE9 256 aa13.58□□□□□ -0.24
USP53-209ENST00000514665 DDX42Q86XP3 938 aaKnown RBP eCLIP13.58□□□□□ -0.24
USP53-209ENST00000514665 TTC17Q96AE7 1141 aa13.58□□□□□ -0.24
USP53-209ENST00000514665 TBC1D22BQ9NU19 505 aa13.58□□□□□ -0.24
USP53-209ENST00000514665 H0Y3Z8 333 aa13.57□□□□□ -0.24
USP53-209ENST00000514665 CNGA1P29973 690 aa13.57□□□□□ -0.24
USP53-209ENST00000514665 CARSP49589 748 aaKnown RBP13.57□□□□□ -0.24
USP53-209ENST00000514665 NTRK3Q16288 839 aa13.57□□□□□ -0.24
USP53-209ENST00000514665 RASIP1Q5U651 963 aa13.57□□□□□ -0.24
USP53-209ENST00000514665 SNRNP48Q6IEG0 339 aaKnown RBP13.57□□□□□ -0.24
USP53-209ENST00000514665 MMS22LQ6ZRQ5 1243 aa13.57□□□□□ -0.24
USP53-209ENST00000514665 NLRP14Q86W24 1093 aa13.57□□□□□ -0.24
USP53-209ENST00000514665 CFAP36Q96G28 342 aa13.57□□□□□ -0.24
USP53-209ENST00000514665 ADAM33Q9BZ11 813 aa13.57□□□□□ -0.24
USP53-209ENST00000514665 SCINQ9Y6U3 715 aa13.57□□□□□ -0.24
USP53-209ENST00000514665 ZHX2Q9Y6X8 837 aa13.57□□□□□ -0.24
USP53-209ENST00000514665 CYP26A1O43174 497 aa13.57□□□□□ -0.24
USP53-209ENST00000514665 GPC4O75487 556 aa13.57□□□□□ -0.24
USP53-209ENST00000514665 ACTN3Q08043 901 aaPredicted RBP13.57□□□□□ -0.24
USP53-209ENST00000514665 ASPHQ12797 758 aa13.57□□□□□ -0.24
USP53-209ENST00000514665 SUPT20HL1Q3ZLR7 823 aa13.57□□□□□ -0.24
USP53-209ENST00000514665 ZNF667Q5HYK9 610 aa13.57□□□□□ -0.24
USP53-209ENST00000514665 PRR5LQ6MZQ0 368 aa13.57□□□□□ -0.24
USP53-209ENST00000514665 LDHDQ86WU2 507 aa13.57□□□□□ -0.24
USP53-209ENST00000514665 OR2W6PQ8NHA6 318 aa13.57□□□□□ -0.24
USP53-209ENST00000514665 TRIM51Q9BSJ1 452 aa13.57□□□□□ -0.24
USP53-209ENST00000514665 ATF5Q9Y2D1 282 aaPredicted RBP13.57□□□□□ -0.24
USP53-209ENST00000514665 A0A0G2JND7 137 aa13.57□□□□□ -0.24
USP53-209ENST00000514665 GRID2IPA4D2P6 1211 aa13.57□□□□□ -0.24
USP53-209ENST00000514665 MED7O43513 233 aa13.57□□□□□ -0.24
USP53-209ENST00000514665 SH3BP5O60239 455 aa13.57□□□□□ -0.24
USP53-209ENST00000514665 JAK3P52333 1124 aa13.57□□□□□ -0.24
USP53-209ENST00000514665 ZC2HC1CQ53FD0 456 aaPredicted RBP13.57□□□□□ -0.24
USP53-209ENST00000514665 SLFN12LQ6IEE8 588 aa13.57□□□□□ -0.24
USP53-209ENST00000514665 RSRC2Q7L4I2 434 aaKnown RBP13.57□□□□□ -0.24
USP53-209ENST00000514665 NLRP7Q8WX94 980 aa13.57□□□□□ -0.24
USP53-209ENST00000514665 ZKSCAN7Q9P0L1 754 aaPredicted RBP13.57□□□□□ -0.24
USP53-209ENST00000514665 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.57□□□□□ -0.24
USP53-209ENST00000514665 COL3A1P02461 1466 aaPredicted RBP13.57□□□□□ -0.24
USP53-209ENST00000514665 EVI5O60447 810 aa13.56□□□□□ -0.24
USP53-209ENST00000514665 TJP3O95049 919 aa13.56□□□□□ -0.24
USP53-209ENST00000514665 MYBP10242 640 aa13.56□□□□□ -0.24
USP53-209ENST00000514665 ARL4AP40617 200 aa13.56□□□□□ -0.24
USP53-209ENST00000514665 PRPF38AQ8NAV1 312 aaKnown RBP13.56□□□□□ -0.24
USP53-209ENST00000514665 MAML1Q92585 1016 aa13.56□□□□□ -0.24
USP53-209ENST00000514665 PNKPQ96T60 521 aa13.56□□□□□ -0.24
USP53-209ENST00000514665 RPF1Q9H9Y2 349 aaKnown RBP13.56□□□□□ -0.24
USP53-209ENST00000514665 DIS3Q9Y2L1 958 aaKnown RBP13.56□□□□□ -0.24
USP53-209ENST00000514665 MAP2P11137 1827 aaKnown RBP13.56□□□□□ -0.24
USP53-209ENST00000514665 PPP1R37O75864 691 aa13.56□□□□□ -0.24
USP53-209ENST00000514665 CCHCR1Q8TD31 782 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms