RNA–Protein interactions for RNA: ENST00000514335.1

NIPBL-208, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 2

Gene NIPBL, Length 2,948 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-208ENST00000514335 PIP4K2CQ8TBX8 421 aa7.8□□□□□ -1.16
NIPBL-208ENST00000514335 KIFAP3Q92845 792 aa7.8□□□□□ -1.16
NIPBL-208ENST00000514335 HOOK2Q96ED9 719 aa7.8□□□□□ -1.16
NIPBL-208ENST00000514335 CNDP2Q96KP4 475 aaKnown RBP7.8□□□□□ -1.16
NIPBL-208ENST00000514335 CALN1Q9BXU9 219 aa7.8□□□□□ -1.16
NIPBL-208ENST00000514335 SRCIN1Q9C0H9 1055 aa7.8□□□□□ -1.16
NIPBL-208ENST00000514335 MCM9Q9NXL9 1143 aa7.8□□□□□ -1.16
NIPBL-208ENST00000514335 TEKT2Q9UIF3 430 aa7.8□□□□□ -1.16
NIPBL-208ENST00000514335 TRAF3IP3Q9Y228 551 aa7.8□□□□□ -1.16
NIPBL-208ENST00000514335 MYOM1P52179 1685 aa7.8□□□□□ -1.16
NIPBL-208ENST00000514335 YTHDC2Q9H6S0 1430 aaKnown RBP7.8□□□□□ -1.16
NIPBL-208ENST00000514335 CETN3O15182 167 aa7.79□□□□□ -1.16
NIPBL-208ENST00000514335 SIN3BO75182 1162 aa7.79□□□□□ -1.16
NIPBL-208ENST00000514335 FGF18O76093 207 aa7.79□□□□□ -1.16
NIPBL-208ENST00000514335 LTA4HP09960 611 aaKnown RBP7.79□□□□□ -1.16
NIPBL-208ENST00000514335 TKTP29401 623 aaKnown RBP7.79□□□□□ -1.16
NIPBL-208ENST00000514335 PRKAR1BP31321 381 aa7.79□□□□□ -1.16
NIPBL-208ENST00000514335 MAN2A2P49641 1150 aa7.79□□□□□ -1.16
NIPBL-208ENST00000514335 PLIN5Q00G26 463 aa7.79□□□□□ -1.16
NIPBL-208ENST00000514335 ZNF124Q15973 351 aa7.79□□□□□ -1.16
NIPBL-208ENST00000514335 CCDC40Q4G0X9 1142 aa7.79□□□□□ -1.16
NIPBL-208ENST00000514335 AARDQ4LEZ3 155 aa7.79□□□□□ -1.16
NIPBL-208ENST00000514335 GRAMD4Q6IC98 578 aa7.79□□□□□ -1.16
NIPBL-208ENST00000514335 TUBA3EQ6PEY2 450 aa7.79□□□□□ -1.16
NIPBL-208ENST00000514335 RFPL4BQ6ZWI9 263 aa7.79□□□□□ -1.16
NIPBL-208ENST00000514335 TRMT2AQ8IZ69 625 aaKnown RBP7.79□□□□□ -1.16
NIPBL-208ENST00000514335 CCDC155Q8N6L0 562 aa7.79□□□□□ -1.16
NIPBL-208ENST00000514335 NOC3LQ8WTT2 800 aaKnown RBP7.79□□□□□ -1.16
NIPBL-208ENST00000514335 RNF139Q8WU17 664 aa7.79□□□□□ -1.16
NIPBL-208ENST00000514335 NCLNQ969V3 563 aa7.79□□□□□ -1.16
NIPBL-208ENST00000514335 CCDC42Q96M95 316 aa7.79□□□□□ -1.16
NIPBL-208ENST00000514335 LPIN3Q9BQK8 851 aa7.79□□□□□ -1.16
NIPBL-208ENST00000514335 APOL5Q9BWW9 433 aa7.79□□□□□ -1.16
NIPBL-208ENST00000514335 KLC4Q9NSK0 619 aa7.79□□□□□ -1.16
NIPBL-208ENST00000514335 EHD2Q9NZN4 543 aa7.79□□□□□ -1.16
NIPBL-208ENST00000514335 C15orf41Q9Y2V0 281 aa7.79□□□□□ -1.16
NIPBL-208ENST00000514335 TSC22D4Q9Y3Q8 395 aa7.79□□□□□ -1.16
NIPBL-208ENST00000514335 PCDHGB7Q9Y5F8 929 aa7.79□□□□□ -1.16
NIPBL-208ENST00000514335 ROBO2Q9HCK4 1378 aa7.79□□□□□ -1.16
NIPBL-208ENST00000514335 OVOS2A0A0J9YW53 1432 aa7.79□□□□□ -1.16
NIPBL-208ENST00000514335 OVOS2Q6IE36 1432 aa7.79□□□□□ -1.16
NIPBL-208ENST00000514335 RSPH10B2B2RC85 870 aa7.79□□□□□ -1.16
NIPBL-208ENST00000514335 PLOD2O00469 737 aa7.79□□□□□ -1.16
NIPBL-208ENST00000514335 RNF113AO15541 343 aaKnown RBP7.79□□□□□ -1.16
NIPBL-208ENST00000514335 USO1O60763 962 aaKnown RBP7.79□□□□□ -1.16
NIPBL-208ENST00000514335 OXSR1O95747 527 aaPredicted RBP7.79□□□□□ -1.16
NIPBL-208ENST00000514335 GLAP06280 429 aa7.79□□□□□ -1.16
NIPBL-208ENST00000514335 RSPH10BP0C881 870 aa7.79□□□□□ -1.16
NIPBL-208ENST00000514335 TARSP26639 723 aaKnown RBP7.79□□□□□ -1.16
NIPBL-208ENST00000514335 GNAI1P63096 354 aa7.79□□□□□ -1.16
NIPBL-208ENST00000514335 UBXN1Q04323 297 aa7.79□□□□□ -1.16
NIPBL-208ENST00000514335 SF3B4Q15427 424 aaKnown RBP eCLIP7.79□□□□□ -1.16
NIPBL-208ENST00000514335 MOGQ16653 247 aa7.79□□□□□ -1.16
NIPBL-208ENST00000514335 WHAMMP3Q1A5X7 153 aa7.79□□□□□ -1.16
NIPBL-208ENST00000514335 FAM26EQ8N5C1 309 aa7.79□□□□□ -1.16
NIPBL-208ENST00000514335 OXER1Q8TDS5 423 aa7.79□□□□□ -1.16
NIPBL-208ENST00000514335 ATXN2LQ8WWM7 1075 aaKnown RBP7.79□□□□□ -1.16
NIPBL-208ENST00000514335 EYA1Q99502 592 aa7.79□□□□□ -1.16
NIPBL-208ENST00000514335 NDNQ99608 321 aa7.79□□□□□ -1.16
NIPBL-208ENST00000514335 PSTPIP2Q9H939 334 aa7.79□□□□□ -1.16
NIPBL-208ENST00000514335 GRID1Q9ULK0 1009 aa7.79□□□□□ -1.16
NIPBL-208ENST00000514335 FAM169AQ9Y6X4 670 aa7.79□□□□□ -1.16
NIPBL-208ENST00000514335 SPATA31A5Q5VU36 1347 aa7.79□□□□□ -1.16
NIPBL-208ENST00000514335 SPATA31A7Q8IWB4 1347 aa7.79□□□□□ -1.16
NIPBL-208ENST00000514335 LOC102724428A0A0B4J2F2 783 aa7.79□□□□□ -1.16
NIPBL-208ENST00000514335 A6NHS1 94 aa7.79□□□□□ -1.16
NIPBL-208ENST00000514335 LRRIQ3A6PVS8 624 aaPredicted RBP7.79□□□□□ -1.16
NIPBL-208ENST00000514335 F2P00734 622 aa7.79□□□□□ -1.16
NIPBL-208ENST00000514335 SELLP14151 372 aa7.79□□□□□ -1.16
NIPBL-208ENST00000514335 MYL6BP14649 208 aa7.79□□□□□ -1.16
NIPBL-208ENST00000514335 CTRB1P17538 263 aa7.79□□□□□ -1.16
NIPBL-208ENST00000514335 LMOD1P29536 600 aaPredicted RBP7.79□□□□□ -1.16
NIPBL-208ENST00000514335 SIK1P57059 783 aa7.79□□□□□ -1.16
NIPBL-208ENST00000514335 USP46P62068 366 aa7.79□□□□□ -1.16
NIPBL-208ENST00000514335 MRPS15P82914 257 aaKnown RBP7.79□□□□□ -1.16
NIPBL-208ENST00000514335 VAC14Q08AM6 782 aa7.79□□□□□ -1.16
NIPBL-208ENST00000514335 TKFCQ3LXA3 575 aa7.79□□□□□ -1.16
NIPBL-208ENST00000514335 FBXO43Q4G163 708 aa7.79□□□□□ -1.16
NIPBL-208ENST00000514335 CTRB2Q6GPI1 263 aa7.79□□□□□ -1.16
NIPBL-208ENST00000514335 CLEC2AQ6UVW9 174 aa7.79□□□□□ -1.16
NIPBL-208ENST00000514335 ZDHHC17Q8IUH5 632 aa7.79□□□□□ -1.16
NIPBL-208ENST00000514335 LRRC34Q8IZ02 419 aa7.79□□□□□ -1.16
NIPBL-208ENST00000514335 CCDC33Q8N5R6 958 aa7.79□□□□□ -1.16
NIPBL-208ENST00000514335 ERO1AQ96HE7 468 aa7.79□□□□□ -1.16
NIPBL-208ENST00000514335 SUCLG2Q96I99 432 aa7.79□□□□□ -1.16
NIPBL-208ENST00000514335 REPIN1Q9BWE0 567 aaKnown RBP7.79□□□□□ -1.16
NIPBL-208ENST00000514335 RTFDC1Q9BY42 306 aaPredicted RBP7.79□□□□□ -1.16
NIPBL-208ENST00000514335 VPS11Q9H270 941 aa7.79□□□□□ -1.16
NIPBL-208ENST00000514335 ATP13A1Q9HD20 1204 aa7.79□□□□□ -1.16
NIPBL-208ENST00000514335 WASH6PQ9NQA3 447 aa7.79□□□□□ -1.16
NIPBL-208ENST00000514335 STAG3Q9UJ98 1225 aa7.79□□□□□ -1.16
NIPBL-208ENST00000514335 AFG3L2Q9Y4W6 797 aa7.79□□□□□ -1.16
NIPBL-208ENST00000514335 KTN1Q86UP2 1357 aaKnown RBP7.78□□□□□ -1.16
NIPBL-208ENST00000514335 OVOS2A0A0G2JMS6 1433 aa7.78□□□□□ -1.16
NIPBL-208ENST00000514335 CCDC85CA6NKD9 419 aa7.78□□□□□ -1.16
NIPBL-208ENST00000514335 SURF6O75683 361 aaKnown RBP7.78□□□□□ -1.16
NIPBL-208ENST00000514335 RETP07949 1114 aa7.78□□□□□ -1.16
NIPBL-208ENST00000514335 ZFYP08048 801 aaPredicted RBP7.78□□□□□ -1.16
NIPBL-208ENST00000514335 NAGAP17050 411 aa7.78□□□□□ -1.16
NIPBL-208ENST00000514335 ADSLP30566 484 aaPredicted RBP7.78□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms