RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 PACS2Q86VP3 889 aa9.04□□□□□ -0.96
LIMCH1-216ENST00000512820 SRRM1Q8IYB3 904 aaKnown RBP9.04□□□□□ -0.96
LIMCH1-216ENST00000512820 MARCH10Q8NA82 808 aaPredicted RBP9.04□□□□□ -0.96
LIMCH1-216ENST00000512820 LINC00116Q8NCU8 138 aa9.04□□□□□ -0.96
LIMCH1-216ENST00000512820 RILPQ96NA2 401 aa9.04□□□□□ -0.96
LIMCH1-216ENST00000512820 WNT8AQ9H1J5 351 aa9.04□□□□□ -0.96
LIMCH1-216ENST00000512820 MRPL47Q9HD33 250 aaKnown RBP9.04□□□□□ -0.96
LIMCH1-216ENST00000512820 BRAFP15056 766 aa9.03□□□□□ -0.96
LIMCH1-216ENST00000512820 CYP11B2P19099 503 aa9.03□□□□□ -0.96
LIMCH1-216ENST00000512820 TXNRD3Q86VQ6 643 aa9.03□□□□□ -0.96
LIMCH1-216ENST00000512820 PRMT1Q99873 361 aaKnown RBP9.03□□□□□ -0.96
LIMCH1-216ENST00000512820 BCS1LQ9Y276 419 aa9.03□□□□□ -0.96
LIMCH1-216ENST00000512820 PFASO15067 1338 aa9.03□□□□□ -0.96
LIMCH1-216ENST00000512820 EMSYQ7Z589 1322 aa9.03□□□□□ -0.96
LIMCH1-216ENST00000512820 PITPNM2Q9BZ72 1349 aa9.03□□□□□ -0.96
LIMCH1-216ENST00000512820 ATRNO75882 1429 aa9.03□□□□□ -0.96
LIMCH1-216ENST00000512820 STAM2O75886 525 aa9.03□□□□□ -0.96
LIMCH1-216ENST00000512820 AGTP01019 485 aa9.03□□□□□ -0.96
LIMCH1-216ENST00000512820 FAM153BP0C7A2 387 aa9.03□□□□□ -0.96
LIMCH1-216ENST00000512820 CA4P22748 312 aa9.03□□□□□ -0.96
LIMCH1-216ENST00000512820 FAM153CQ494X1 144 aa9.03□□□□□ -0.96
LIMCH1-216ENST00000512820 BRDTQ58F21 947 aaPredicted RBP9.03□□□□□ -0.96
LIMCH1-216ENST00000512820 TSEN2Q8NCE0 465 aaKnown RBP9.03□□□□□ -0.96
LIMCH1-216ENST00000512820 C1orf54Q8WWF1 131 aa9.03□□□□□ -0.96
LIMCH1-216ENST00000512820 CEP170P1Q96L14 293 aa9.03□□□□□ -0.96
LIMCH1-216ENST00000512820 TMBIM4Q9HC24 238 aa9.03□□□□□ -0.96
LIMCH1-216ENST00000512820 APEX2Q9UBZ4 518 aa9.03□□□□□ -0.96
LIMCH1-216ENST00000512820 FAM153AQ9UHL3 310 aa9.03□□□□□ -0.96
LIMCH1-216ENST00000512820 GPR75-ASB3A0A0A6YYF3 556 aa9.03□□□□□ -0.96
LIMCH1-216ENST00000512820 LRRIQ4A6NIV6 560 aa9.03□□□□□ -0.96
LIMCH1-216ENST00000512820 KRT1P04264 644 aa9.03□□□□□ -0.96
LIMCH1-216ENST00000512820 FUT2Q10981 343 aa9.03□□□□□ -0.96
LIMCH1-216ENST00000512820 TAF11Q15544 211 aa9.03□□□□□ -0.96
LIMCH1-216ENST00000512820 ZNF449Q6P9G9 518 aa9.03□□□□□ -0.96
LIMCH1-216ENST00000512820 JAMLQ86YT9 394 aa9.03□□□□□ -0.96
LIMCH1-216ENST00000512820 SUPT20HQ8NEM7 779 aa9.03□□□□□ -0.96
LIMCH1-216ENST00000512820 MDM1Q8TC05 714 aa9.03□□□□□ -0.96
LIMCH1-216ENST00000512820 ERP44Q9BS26 406 aa9.03□□□□□ -0.96
LIMCH1-216ENST00000512820 SLC40A1Q9NP59 571 aa9.03□□□□□ -0.96
LIMCH1-216ENST00000512820 CPSF2Q9P2I0 782 aaKnown RBP9.03□□□□□ -0.96
LIMCH1-216ENST00000512820 ANKFY1Q9P2R3 1169 aa9.03□□□□□ -0.96
LIMCH1-216ENST00000512820 RASA4BC9J798 803 aa9.03□□□□□ -0.96
LIMCH1-216ENST00000512820 RASA4O43374 803 aa9.03□□□□□ -0.96
LIMCH1-216ENST00000512820 GGPS1O95749 300 aa9.03□□□□□ -0.96
LIMCH1-216ENST00000512820 TMEM253P0C7T8 217 aa9.03□□□□□ -0.96
LIMCH1-216ENST00000512820 RFX1P22670 979 aa9.03□□□□□ -0.96
LIMCH1-216ENST00000512820 CCDC110Q8TBZ0 833 aa9.03□□□□□ -0.96
LIMCH1-216ENST00000512820 MORC4Q8TE76 937 aa9.03□□□□□ -0.96
LIMCH1-216ENST00000512820 JDP2Q8WYK2 163 aa9.03□□□□□ -0.96
LIMCH1-216ENST00000512820 FRMD4AQ9P2Q2 1039 aaPredicted RBP9.03□□□□□ -0.96
LIMCH1-216ENST00000512820 CACNA1FO60840 1977 aa9.03□□□□□ -0.96
LIMCH1-216ENST00000512820 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP9.02□□□□□ -0.96
LIMCH1-216ENST00000512820 LOC102724159A0A0B4J2E5 919 aa9.02□□□□□ -0.96
LIMCH1-216ENST00000512820 WTIPA6NIX2 430 aaPredicted RBP9.02□□□□□ -0.96
LIMCH1-216ENST00000512820 CYTH3O43739 400 aa9.02□□□□□ -0.96
LIMCH1-216ENST00000512820 PHF2O75151 1096 aa9.02□□□□□ -0.96
LIMCH1-216ENST00000512820 RPS6KA5O75582 802 aa9.02□□□□□ -0.96
LIMCH1-216ENST00000512820 PON1P27169 355 aa9.02□□□□□ -0.96
LIMCH1-216ENST00000512820 HSPA1LP34931 641 aa9.02□□□□□ -0.96
LIMCH1-216ENST00000512820 COPB2P35606 906 aa9.02□□□□□ -0.96
LIMCH1-216ENST00000512820 SARNPP82979 210 aaKnown RBP9.02□□□□□ -0.96
LIMCH1-216ENST00000512820 MYO1EQ12965 1108 aa9.02□□□□□ -0.96
LIMCH1-216ENST00000512820 PWP2Q15269 919 aaKnown RBP9.02□□□□□ -0.96
LIMCH1-216ENST00000512820 C3orf67Q6ZVT6 689 aa9.02□□□□□ -0.96
LIMCH1-216ENST00000512820 CATSPER3Q86XQ3 398 aa9.02□□□□□ -0.96
LIMCH1-216ENST00000512820 IRF2BP1Q8IU81 584 aa9.02□□□□□ -0.96
LIMCH1-216ENST00000512820 TRIM59Q8IWR1 403 aa9.02□□□□□ -0.96
LIMCH1-216ENST00000512820 FAM81BQ96LP2 452 aa9.02□□□□□ -0.96
LIMCH1-216ENST00000512820 PNMA5Q96PV4 448 aa9.02□□□□□ -0.96
LIMCH1-216ENST00000512820 GGT7Q9UJ14 662 aa9.02□□□□□ -0.96
LIMCH1-216ENST00000512820 CFAP73A6NFT4 308 aa9.02□□□□□ -0.97
LIMCH1-216ENST00000512820 ZC2HC1CQ53FD0 456 aaPredicted RBP9.02□□□□□ -0.97
LIMCH1-216ENST00000512820 CDAN1Q8IWY9 1227 aa9.02□□□□□ -0.97
LIMCH1-216ENST00000512820 NKX2-3Q8TAU0 364 aa9.02□□□□□ -0.97
LIMCH1-216ENST00000512820 ECT2Q9H8V3 914 aa9.02□□□□□ -0.97
LIMCH1-216ENST00000512820 SAYSD1Q9NPB0 183 aa9.02□□□□□ -0.97
LIMCH1-216ENST00000512820 SIK3Q9Y2K2 1263 aa9.02□□□□□ -0.97
LIMCH1-216ENST00000512820 BAZ2BQ9UIF8 2168 aaKnown RBP9.02□□□□□ -0.97
LIMCH1-216ENST00000512820 WDR91A4D1P6 747 aa9.02□□□□□ -0.97
LIMCH1-216ENST00000512820 TBX3O15119 743 aa9.02□□□□□ -0.97
LIMCH1-216ENST00000512820 MAPK13O15264 365 aa9.02□□□□□ -0.97
LIMCH1-216ENST00000512820 PJA2O43164 708 aa9.02□□□□□ -0.97
LIMCH1-216ENST00000512820 SLC26A4O43511 780 aa9.02□□□□□ -0.97
LIMCH1-216ENST00000512820 RPA1P27694 616 aa9.02□□□□□ -0.97
LIMCH1-216ENST00000512820 POLGP54098 1239 aaPredicted RBP9.02□□□□□ -0.97
LIMCH1-216ENST00000512820 YWHAGP61981 247 aaKnown RBP eCLIP9.02□□□□□ -0.97
LIMCH1-216ENST00000512820 SLC20A2Q08357 652 aa9.02□□□□□ -0.97
LIMCH1-216ENST00000512820 MIIPQ5JXC2 388 aa9.02□□□□□ -0.97
LIMCH1-216ENST00000512820 PHLDB3Q6NSJ2 640 aa9.02□□□□□ -0.97
LIMCH1-216ENST00000512820 ZNF571Q7Z3V5 609 aaPredicted RBP9.02□□□□□ -0.97
LIMCH1-216ENST00000512820 SCYL3Q8IZE3 742 aa9.02□□□□□ -0.97
LIMCH1-216ENST00000512820 NLGN1Q8N2Q7 840 aa9.02□□□□□ -0.97
LIMCH1-216ENST00000512820 PAF1Q8N7H5 531 aa9.02□□□□□ -0.97
LIMCH1-216ENST00000512820 GLG1Q92896 1179 aa9.02□□□□□ -0.97
LIMCH1-216ENST00000512820 ATP6V0A1Q93050 837 aa9.02□□□□□ -0.97
LIMCH1-216ENST00000512820 LXNQ9BS40 222 aa9.02□□□□□ -0.97
LIMCH1-216ENST00000512820 PICK1Q9NRD5 415 aa9.02□□□□□ -0.97
LIMCH1-216ENST00000512820 BLOC1S4Q9NUP1 217 aa9.02□□□□□ -0.97
LIMCH1-216ENST00000512820 DBR1Q9UK59 544 aaKnown RBP9.02□□□□□ -0.97
LIMCH1-216ENST00000512820 ALG6Q9Y672 507 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms