RNA–Protein interactions for RNA: ENST00000510852.1

USP53-207, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 2,437 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-207ENST00000510852 STAM2O75886 525 aa10.58□□□□□ -0.72
USP53-207ENST00000510852 SNX4O95219 450 aa10.58□□□□□ -0.72
USP53-207ENST00000510852 PCP11498 1178 aaKnown RBP10.58□□□□□ -0.72
USP53-207ENST00000510852 CPA1P15085 419 aa10.58□□□□□ -0.72
USP53-207ENST00000510852 HADHAP40939 763 aa10.58□□□□□ -0.72
USP53-207ENST00000510852 TNNT3P45378 269 aaPredicted RBP10.58□□□□□ -0.72
USP53-207ENST00000510852 PLCD1P51178 756 aa10.58□□□□□ -0.72
USP53-207ENST00000510852 TCP10Q12799 353 aa10.58□□□□□ -0.72
USP53-207ENST00000510852 DSG2Q14126 1118 aa10.58□□□□□ -0.72
USP53-207ENST00000510852 ANKDD1AQ495B1 522 aa10.58□□□□□ -0.72
USP53-207ENST00000510852 ZFPM1Q8IX07 1006 aa10.58□□□□□ -0.72
USP53-207ENST00000510852 CCT6BQ92526 530 aa10.58□□□□□ -0.72
USP53-207ENST00000510852 SGCDQ92629 289 aa10.58□□□□□ -0.72
USP53-207ENST00000510852 TIGD1Q96MW7 591 aa10.58□□□□□ -0.72
USP53-207ENST00000510852 TNKS2Q9H2K2 1166 aa10.58□□□□□ -0.72
USP53-207ENST00000510852 TACC3Q9Y6A5 838 aa10.58□□□□□ -0.72
USP53-207ENST00000510852 ITIH6Q6UXX5 1313 aa10.58□□□□□ -0.72
USP53-207ENST00000510852 GLTPD2A6NH11 291 aa10.58□□□□□ -0.72
USP53-207ENST00000510852 TCP10L2B9ZVM9 353 aa10.58□□□□□ -0.72
USP53-207ENST00000510852 SLC3A2P08195 630 aaKnown RBP10.58□□□□□ -0.72
USP53-207ENST00000510852 NEK4P51957 841 aa10.58□□□□□ -0.72
USP53-207ENST00000510852 C21orf58P58505 322 aa10.58□□□□□ -0.72
USP53-207ENST00000510852 KCNC4Q03721 635 aa10.58□□□□□ -0.72
USP53-207ENST00000510852 FAPQ12884 760 aa10.58□□□□□ -0.72
USP53-207ENST00000510852 IFRD2Q12894 506 aaPredicted RBP10.58□□□□□ -0.72
USP53-207ENST00000510852 PPA1Q15181 289 aa10.58□□□□□ -0.72
USP53-207ENST00000510852 HHATQ5VTY9 493 aa10.58□□□□□ -0.72
USP53-207ENST00000510852 KDELC1Q6UW63 502 aa10.58□□□□□ -0.72
USP53-207ENST00000510852 TOPORSQ9NS56 1045 aaPredicted RBP10.58□□□□□ -0.72
USP53-207ENST00000510852 HCN4Q9Y3Q4 1203 aa10.58□□□□□ -0.72
USP53-207ENST00000510852 NEDD4P46934 1319 aa10.57□□□□□ -0.72
USP53-207ENST00000510852 C17orf113A0A1B0GUU1 675 aa10.57□□□□□ -0.72
USP53-207ENST00000510852 NMT2O60551 498 aa10.57□□□□□ -0.72
USP53-207ENST00000510852 TBCAO75347 108 aaKnown RBP10.57□□□□□ -0.72
USP53-207ENST00000510852 ENTPD3O75355 529 aa10.57□□□□□ -0.72
USP53-207ENST00000510852 TADA3O75528 432 aa10.57□□□□□ -0.72
USP53-207ENST00000510852 ITIH3Q06033 890 aa10.57□□□□□ -0.72
USP53-207ENST00000510852 AP1B1Q10567 949 aa10.57□□□□□ -0.72
USP53-207ENST00000510852 ITPRIPL1Q6GPH6 555 aa10.57□□□□□ -0.72
USP53-207ENST00000510852 BLOC1S2Q6QNY1 142 aa10.57□□□□□ -0.72
USP53-207ENST00000510852 RUFY3Q7L099 469 aa10.57□□□□□ -0.72
USP53-207ENST00000510852 SLC41A1Q8IVJ1 513 aa10.57□□□□□ -0.72
USP53-207ENST00000510852 NKX2-3Q8TAU0 364 aa10.57□□□□□ -0.72
USP53-207ENST00000510852 TNMDQ9H2S6 317 aa10.57□□□□□ -0.72
USP53-207ENST00000510852 FBRSQ9HAH7 460 aa10.57□□□□□ -0.72
USP53-207ENST00000510852 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.57□□□□□ -0.72
USP53-207ENST00000510852 RIMKLBQ9ULI2 386 aa10.57□□□□□ -0.72
USP53-207ENST00000510852 EFR3BQ9Y2G0 817 aa10.57□□□□□ -0.72
USP53-207ENST00000510852 CYP46A1Q9Y6A2 500 aa10.57□□□□□ -0.72
USP53-207ENST00000510852 BAZ2AQ9UIF9 1905 aaKnown RBP10.57□□□□□ -0.72
USP53-207ENST00000510852 ASTN2O75129 1339 aaPredicted RBP10.57□□□□□ -0.72
USP53-207ENST00000510852 SFI1A8K8P3 1242 aa10.57□□□□□ -0.72
USP53-207ENST00000510852 ZBTB43O43298 467 aa10.57□□□□□ -0.72
USP53-207ENST00000510852 EYA4O95677 639 aa10.57□□□□□ -0.72
USP53-207ENST00000510852 RPS6KB1P23443 525 aa10.57□□□□□ -0.72
USP53-207ENST00000510852 EVCP57679 992 aa10.57□□□□□ -0.72
USP53-207ENST00000510852 PPP2R3AQ06190 1150 aa10.57□□□□□ -0.72
USP53-207ENST00000510852 FKBP1CQ5VVH2 108 aa10.57□□□□□ -0.72
USP53-207ENST00000510852 FAM186BQ8IYM0 893 aa10.57□□□□□ -0.72
USP53-207ENST00000510852 NCOA7Q8NI08 942 aa10.57□□□□□ -0.72
USP53-207ENST00000510852 KCTD13Q8WZ19 329 aa10.57□□□□□ -0.72
USP53-207ENST00000510852 DYNLL2Q96FJ2 89 aa10.57□□□□□ -0.72
USP53-207ENST00000510852 CEP295NLQ96MC4 621 aa10.57□□□□□ -0.72
USP53-207ENST00000510852 CHCHD6Q9BRQ6 235 aa10.57□□□□□ -0.72
USP53-207ENST00000510852 RNF41Q9H4P4 317 aaPredicted RBP10.57□□□□□ -0.72
USP53-207ENST00000510852 DUSP12Q9UNI6 340 aa10.57□□□□□ -0.72
USP53-207ENST00000510852 SSX2IPQ9Y2D8 614 aa10.57□□□□□ -0.72
USP53-207ENST00000510852 SYNJ2BP-COX16A0A087WUM0 186 aa10.56□□□□□ -0.72
USP53-207ENST00000510852 E2F8A0AVK6 867 aa10.56□□□□□ -0.72
USP53-207ENST00000510852 INO80B-WBP1J3KQ70 363 aa10.56□□□□□ -0.72
USP53-207ENST00000510852 AREL1O15033 823 aa10.56□□□□□ -0.72
USP53-207ENST00000510852 PDCD2Q16342 344 aaPredicted RBP10.56□□□□□ -0.72
USP53-207ENST00000510852 SH3BP5LQ7L8J4 393 aa10.56□□□□□ -0.72
USP53-207ENST00000510852 RALYLQ86SE5 291 aaKnown RBP10.56□□□□□ -0.72
USP53-207ENST00000510852 TTC6Q86TZ1 520 aa10.56□□□□□ -0.72
USP53-207ENST00000510852 KIF12Q96FN5 646 aa10.56□□□□□ -0.72
USP53-207ENST00000510852 ADARB2Q9NS39 739 aaKnown RBP10.56□□□□□ -0.72
USP53-207ENST00000510852 CWC15Q9P013 229 aaKnown RBP10.56□□□□□ -0.72
USP53-207ENST00000510852 CDK5RAP2Q96SN8 1893 aa10.56□□□□□ -0.72
USP53-207ENST00000510852 NAV1Q8NEY1 1877 aa10.56□□□□□ -0.72
USP53-207ENST00000510852 DDTLA6NHG4 134 aaPredicted RBP10.56□□□□□ -0.72
USP53-207ENST00000510852 B4E1Z4 1266 aa10.56□□□□□ -0.72
USP53-207ENST00000510852 MCF2LO15068 1137 aa10.56□□□□□ -0.72
USP53-207ENST00000510852 MAP3K6O95382 1288 aa10.56□□□□□ -0.72
USP53-207ENST00000510852 CD2BP2O95400 341 aaKnown RBP10.56□□□□□ -0.72
USP53-207ENST00000510852 HIRAP54198 1017 aaPredicted RBP10.56□□□□□ -0.72
USP53-207ENST00000510852 ATP2B2Q01814 1243 aa10.56□□□□□ -0.72
USP53-207ENST00000510852 POSTNQ15063 836 aa10.56□□□□□ -0.72
USP53-207ENST00000510852 CNSTQ6PJW8 725 aa10.56□□□□□ -0.72
USP53-207ENST00000510852 DHX32Q7L7V1 743 aaKnown RBP10.56□□□□□ -0.72
USP53-207ENST00000510852 ARHGAP30Q7Z6I6 1101 aaPredicted RBP10.56□□□□□ -0.72
USP53-207ENST00000510852 DNAJB7Q7Z6W7 309 aaPredicted RBP10.56□□□□□ -0.72
USP53-207ENST00000510852 EPHX4Q8IUS5 362 aa10.56□□□□□ -0.72
USP53-207ENST00000510852 MB21D2Q8IYB1 491 aaPredicted RBP10.56□□□□□ -0.72
USP53-207ENST00000510852 ANAPC16Q96DE5 110 aa10.56□□□□□ -0.72
USP53-207ENST00000510852 DDX11Q96FC9 970 aa10.56□□□□□ -0.72
USP53-207ENST00000510852 TACO1Q9BSH4 297 aaKnown RBP10.56□□□□□ -0.72
USP53-207ENST00000510852 CRB3Q9BUF7 120 aa10.56□□□□□ -0.72
USP53-207ENST00000510852 CFHR5Q9BXR6 569 aa10.56□□□□□ -0.72
USP53-207ENST00000510852 LMAN2LQ9H0V9 348 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms