RNA–Protein interactions for RNA: ENST00000507449.1

LSM6-205, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 3

Gene LSM6, Length 371 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM6-205	ENST00000507449	NOB1	Q9ULX3	412 aa	Known RBP	4.61	□□□□□ -1.67
LSM6-205	ENST00000507449	PF4V1	P10720	104 aa		4.6	□□□□□ -1.67
LSM6-205	ENST00000507449	ZNF28	P17035	718 aa		4.6	□□□□□ -1.67
LSM6-205	ENST00000507449	PI3	P19957	117 aa		4.6	□□□□□ -1.67
LSM6-205	ENST00000507449	CCND1	P24385	295 aa		4.6	□□□□□ -1.67
LSM6-205	ENST00000507449	PPARA	Q07869	468 aa		4.6	□□□□□ -1.67
LSM6-205	ENST00000507449	NFATC3	Q12968	1075 aa		4.6	□□□□□ -1.67
LSM6-205	ENST00000507449	FAM102B	Q5T8I3	360 aa		4.6	□□□□□ -1.67
LSM6-205	ENST00000507449	NXN	Q6DKJ4	435 aa		4.6	□□□□□ -1.67
LSM6-205	ENST00000507449	SYDE1	Q6ZW31	735 aa	Predicted RBP	4.6	□□□□□ -1.67
LSM6-205	ENST00000507449	CXXC5	Q7LFL8	322 aa	Known RBP	4.6	□□□□□ -1.67
LSM6-205	ENST00000507449	C14orf80	Q86SX3	495 aa		4.6	□□□□□ -1.67
LSM6-205	ENST00000507449	LRRC56	Q8IYG6	542 aa	Predicted RBP	4.6	□□□□□ -1.67
LSM6-205	ENST00000507449	TCEAL8	Q8IYN2	117 aa		4.6	□□□□□ -1.67
LSM6-205	ENST00000507449	AUTS2	Q8WXX7	1259 aa		4.6	□□□□□ -1.67
LSM6-205	ENST00000507449	RPGR	Q92834	1020 aa	Known RBP	4.6	□□□□□ -1.67
LSM6-205	ENST00000507449	RAX2	Q96IS3	184 aa		4.6	□□□□□ -1.67
LSM6-205	ENST00000507449	SERPINB13	Q9UIV8	391 aa		4.6	□□□□□ -1.67
LSM6-205	ENST00000507449	USP18	Q9UMW8	372 aa		4.6	□□□□□ -1.67
LSM6-205	ENST00000507449	INVS	Q9Y283	1065 aa		4.6	□□□□□ -1.67
LSM6-205	ENST00000507449	PCDHB6	Q9Y5E3	794 aa		4.6	□□□□□ -1.67
LSM6-205	ENST00000507449	CDY2A	Q9Y6F7	541 aa		4.6	□□□□□ -1.67
LSM6-205	ENST00000507449	PMF1-BGLAP	U3KQ54	211 aa		4.6	□□□□□ -1.67
LSM6-205	ENST00000507449	SEC24D	O94855	1032 aa	Predicted RBP	4.59	□□□□□ -1.67
LSM6-205	ENST00000507449	KLHL18	O94889	574 aa		4.59	□□□□□ -1.67
LSM6-205	ENST00000507449	CCT2	P78371	535 aa	Known RBP	4.59	□□□□□ -1.67
LSM6-205	ENST00000507449	CDK17	Q00537	523 aa		4.59	□□□□□ -1.67
LSM6-205	ENST00000507449	TCIRG1	Q13488	830 aa		4.59	□□□□□ -1.67
LSM6-205	ENST00000507449	EFCAB2	Q5VUJ9	269 aa		4.59	□□□□□ -1.67
LSM6-205	ENST00000507449	GRAMD4	Q6IC98	578 aa		4.59	□□□□□ -1.67
LSM6-205	ENST00000507449	DPP8	Q6V1X1	898 aa	Predicted RBP	4.59	□□□□□ -1.67
LSM6-205	ENST00000507449	BMP8A	Q7Z5Y6	402 aa		4.59	□□□□□ -1.67
LSM6-205	ENST00000507449	SAPCD2	Q86UD0	394 aa		4.59	□□□□□ -1.67
LSM6-205	ENST00000507449	WDR75	Q8IWA0	830 aa	Known RBP	4.59	□□□□□ -1.67
LSM6-205	ENST00000507449	MYO1H	Q8N1T3	1032 aa		4.59	□□□□□ -1.67
LSM6-205	ENST00000507449	CDYL2	Q8N8U2	506 aa		4.59	□□□□□ -1.67
LSM6-205	ENST00000507449	NUDT10	Q8NFP7	164 aa		4.59	□□□□□ -1.67
LSM6-205	ENST00000507449	OR14C36	Q8NHC7	312 aa		4.59	□□□□□ -1.67
LSM6-205	ENST00000507449	PPP1R14C	Q8TAE6	165 aa		4.59	□□□□□ -1.67
LSM6-205	ENST00000507449	ZNF526	Q8TF50	670 aa	Predicted RBP	4.59	□□□□□ -1.67
LSM6-205	ENST00000507449	SSH1	Q8WYL5	1049 aa		4.59	□□□□□ -1.67
LSM6-205	ENST00000507449	HSPBAP1	Q96EW2	488 aa		4.59	□□□□□ -1.67
LSM6-205	ENST00000507449	NUDT11	Q96G61	164 aa		4.59	□□□□□ -1.67
LSM6-205	ENST00000507449	C8orf48	Q96LL4	319 aa		4.59	□□□□□ -1.67
LSM6-205	ENST00000507449	WRNIP1	Q96S55	665 aa		4.59	□□□□□ -1.67
LSM6-205	ENST00000507449	NOL10	Q9BSC4	688 aa	Known RBP	4.59	□□□□□ -1.67
LSM6-205	ENST00000507449	IFT122	Q9HBG6	1241 aa		4.59	□□□□□ -1.67
LSM6-205	ENST00000507449	CD320	Q9NPF0	282 aa		4.59	□□□□□ -1.67
LSM6-205	ENST00000507449	ANLN	Q9NQW6	1124 aa		4.59	□□□□□ -1.67
LSM6-205	ENST00000507449	SCOC	Q9UIL1	159 aa		4.59	□□□□□ -1.67
LSM6-205	ENST00000507449	ZBTB21	Q9ULJ3	1066 aa		4.59	□□□□□ -1.67
LSM6-205	ENST00000507449	ANKRD6	Q9Y2G4	727 aa		4.59	□□□□□ -1.67
LSM6-205	ENST00000507449	GIT1	Q9Y2X7	761 aa		4.59	□□□□□ -1.67
LSM6-205	ENST00000507449	MRFAP1	Q9Y605	127 aa		4.59	□□□□□ -1.67
LSM6-205	ENST00000507449	IRAK3	Q9Y616	596 aa		4.59	□□□□□ -1.67
LSM6-205	ENST00000507449		H0Y858	1186 aa		4.58	□□□□□ -1.68
LSM6-205	ENST00000507449	CUTA	O60888	179 aa		4.58	□□□□□ -1.68
LSM6-205	ENST00000507449	NDUFS2	O75306	463 aa		4.58	□□□□□ -1.68
LSM6-205	ENST00000507449	CHGB	P05060	677 aa		4.58	□□□□□ -1.68
LSM6-205	ENST00000507449	C1QTNF9	P0C862	333 aa		4.58	□□□□□ -1.68
LSM6-205	ENST00000507449	MTHFD2	P13995	350 aa		4.58	□□□□□ -1.68
LSM6-205	ENST00000507449	LPO	P22079	712 aa	Predicted RBP	4.58	□□□□□ -1.68
LSM6-205	ENST00000507449	CFP	P27918	469 aa		4.58	□□□□□ -1.68
LSM6-205	ENST00000507449	IL13	P35225	146 aa		4.58	□□□□□ -1.68
LSM6-205	ENST00000507449	FXR1	P51114	621 aa	Known RBP eCLIP	4.58	□□□□□ -1.68
LSM6-205	ENST00000507449	TOP3A	Q13472	1001 aa	Predicted RBP	4.58	□□□□□ -1.68
LSM6-205	ENST00000507449	ADRM1	Q16186	407 aa		4.58	□□□□□ -1.68
LSM6-205	ENST00000507449	DGKD	Q16760	1214 aa		4.58	□□□□□ -1.68
LSM6-205	ENST00000507449	WDR72	Q3MJ13	1102 aa		4.58	□□□□□ -1.68
LSM6-205	ENST00000507449	MBNL2	Q5VZF2	373 aa	Known RBP	4.58	□□□□□ -1.68
LSM6-205	ENST00000507449	TRMT10B	Q6PF06	316 aa	Known RBP	4.58	□□□□□ -1.68
LSM6-205	ENST00000507449	ATG14	Q6ZNE5	492 aa		4.58	□□□□□ -1.68
LSM6-205	ENST00000507449	EPM2AIP1	Q7L775	607 aa	Predicted RBP	4.58	□□□□□ -1.68
LSM6-205	ENST00000507449	ADGRG2	Q8IZP9	1017 aa		4.58	□□□□□ -1.68
LSM6-205	ENST00000507449	MAGEB6	Q8N7X4	407 aa		4.58	□□□□□ -1.68
LSM6-205	ENST00000507449	TTC8	Q8TAM2	541 aa		4.58	□□□□□ -1.68
LSM6-205	ENST00000507449	GAB3	Q8WWW8	586 aa		4.58	□□□□□ -1.68
LSM6-205	ENST00000507449	RSAD2	Q8WXG1	361 aa		4.58	□□□□□ -1.68
LSM6-205	ENST00000507449	NKD2	Q969F2	451 aa	Predicted RBP	4.58	□□□□□ -1.68
LSM6-205	ENST00000507449	PWWP2A	Q96N64	755 aa		4.58	□□□□□ -1.68
LSM6-205	ENST00000507449	CDC42EP3	Q9UKI2	254 aa		4.58	□□□□□ -1.68
LSM6-205	ENST00000507449		A0A0G2JNJ9	132 aa		4.57	□□□□□ -1.68
LSM6-205	ENST00000507449		A0A1B0GTL3	188 aa		4.57	□□□□□ -1.68
LSM6-205	ENST00000507449	DDX3X	O00571	662 aa	Known RBP eCLIP	4.57	□□□□□ -1.68	4e-8	■■■□□ 15.9
LSM6-205	ENST00000507449	FFAR3	O14843	346 aa		4.57	□□□□□ -1.68
LSM6-205	ENST00000507449	TMEM127	O75204	238 aa		4.57	□□□□□ -1.68
LSM6-205	ENST00000507449	RPL13	P26373	211 aa	Known RBP	4.57	□□□□□ -1.68
LSM6-205	ENST00000507449	GPR15	P49685	360 aa		4.57	□□□□□ -1.68
LSM6-205	ENST00000507449	STAT5B	P51692	787 aa		4.57	□□□□□ -1.68
LSM6-205	ENST00000507449	SPIDR	Q14159	915 aa		4.57	□□□□□ -1.68
LSM6-205	ENST00000507449	MLC1	Q15049	377 aa		4.57	□□□□□ -1.68
LSM6-205	ENST00000507449	EIF4H	Q15056	248 aa	Known RBP	4.57	□□□□□ -1.68
LSM6-205	ENST00000507449	HSP90AB2P	Q58FF8	381 aa		4.57	□□□□□ -1.68
LSM6-205	ENST00000507449	CCDC181	Q5TID7	509 aa		4.57	□□□□□ -1.68
LSM6-205	ENST00000507449	CNKSR3	Q6P9H4	555 aa		4.57	□□□□□ -1.68
LSM6-205	ENST00000507449	LARP4	Q71RC2	724 aa	Known RBP eCLIP	4.57	□□□□□ -1.68
LSM6-205	ENST00000507449	OTOP2	Q7RTS6	562 aa		4.57	□□□□□ -1.68
LSM6-205	ENST00000507449	PPM1N	Q8N819	430 aa		4.57	□□□□□ -1.68
LSM6-205	ENST00000507449	DACT3	Q96B18	629 aa	Predicted RBP	4.57	□□□□□ -1.68
LSM6-205	ENST00000507449	DYDC2	Q96IM9	177 aa		4.57	□□□□□ -1.68

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