RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 POLGP54098 1239 aaPredicted RBP23.64■■□□□ 1.37
SQSTM1-210ENST00000506042 MTMR3Q13615 1198 aa23.64■■□□□ 1.37
SQSTM1-210ENST00000506042 MTERF2Q49AM1 385 aa23.64■■□□□ 1.37
SQSTM1-210ENST00000506042 PPFIBP1Q86W92 1011 aa23.64■■□□□ 1.37
SQSTM1-210ENST00000506042 LINC01465Q8N7H1 131 aa23.64■■□□□ 1.37
SQSTM1-210ENST00000506042 MRPL43Q8N983 215 aaKnown RBP23.64■■□□□ 1.37
SQSTM1-210ENST00000506042 URGCPQ8TCY9 931 aa23.64■■□□□ 1.37
SQSTM1-210ENST00000506042 HELQQ8TDG4 1101 aa23.64■■□□□ 1.37
SQSTM1-210ENST00000506042 VPS54Q9P1Q0 977 aa23.64■■□□□ 1.37
SQSTM1-210ENST00000506042 DEXIO95424 95 aa23.63■■□□□ 1.37
SQSTM1-210ENST00000506042 Q4G0T1 1027 aa23.63■■□□□ 1.37
SQSTM1-210ENST00000506042 MOXD1Q6UVY6 613 aa23.63■■□□□ 1.37
SQSTM1-210ENST00000506042 SLC39A11Q8N1S5 342 aa23.63■■□□□ 1.37
SQSTM1-210ENST00000506042 PLCD3Q8N3E9 789 aa23.63■■□□□ 1.37
SQSTM1-210ENST00000506042 TBCKQ8TEA7 893 aa23.63■■□□□ 1.37
SQSTM1-210ENST00000506042 KCNB2Q92953 911 aa23.63■■□□□ 1.37
SQSTM1-210ENST00000506042 NAP1L4Q99733 375 aaKnown RBP23.63■■□□□ 1.37
SQSTM1-210ENST00000506042 TRAIPQ9BWF2 469 aa23.63■■□□□ 1.37
SQSTM1-210ENST00000506042 NIFKQ9BYG3 293 aaKnown RBP23.63■■□□□ 1.37
SQSTM1-210ENST00000506042 ADAM7Q9H2U9 754 aa23.63■■□□□ 1.37
SQSTM1-210ENST00000506042 PCDHA4Q9UN74 947 aa23.63■■□□□ 1.37
SQSTM1-210ENST00000506042 SORCS3Q9UPU3 1222 aa23.63■■□□□ 1.37
SQSTM1-210ENST00000506042 PPME1Q9Y570 386 aa23.63■■□□□ 1.37
SQSTM1-210ENST00000506042 SNX14Q9Y5W7 946 aa23.63■■□□□ 1.37
SQSTM1-210ENST00000506042 EPB41L2O43491 1005 aaKnown RBP23.62■■□□□ 1.37
SQSTM1-210ENST00000506042 ZC3H11AO75152 810 aaKnown RBP eCLIP23.62■■□□□ 1.37
SQSTM1-210ENST00000506042 CXCL14O95715 111 aa23.62■■□□□ 1.37
SQSTM1-210ENST00000506042 BCAR1P56945 870 aa23.62■■□□□ 1.37
SQSTM1-210ENST00000506042 SLC7A3Q8WY07 619 aa23.62■■□□□ 1.37
SQSTM1-210ENST00000506042 LENG9Q96B70 501 aa23.62■■□□□ 1.37
SQSTM1-210ENST00000506042 AGXT2Q9BYV1 514 aa23.62■■□□□ 1.37
SQSTM1-210ENST00000506042 S1PR5Q9H228 398 aa23.62■■□□□ 1.37
SQSTM1-210ENST00000506042 UNC45AQ9H3U1 944 aa23.62■■□□□ 1.37
SQSTM1-210ENST00000506042 PIN4Q9Y237 131 aaKnown RBP23.62■■□□□ 1.37
SQSTM1-210ENST00000506042 WDR81Q562E7 1941 aa23.62■■□□□ 1.37
SQSTM1-210ENST00000506042 HIDE1A8MVS5 230 aa23.61■■□□□ 1.37
SQSTM1-210ENST00000506042 ZNF862O60290 1169 aa23.61■■□□□ 1.37
SQSTM1-210ENST00000506042 MARCH6O60337 910 aa23.61■■□□□ 1.37
SQSTM1-210ENST00000506042 CDKL5O76039 1030 aa23.61■■□□□ 1.37
SQSTM1-210ENST00000506042 KCNC3Q14003 757 aa23.61■■□□□ 1.37
SQSTM1-210ENST00000506042 NONOQ15233 471 aaKnown RBP eCLIP23.61■■□□□ 1.37
SQSTM1-210ENST00000506042 ATAT1Q5SQI0 421 aa23.61■■□□□ 1.37
SQSTM1-210ENST00000506042 LRRC55Q6ZSA7 311 aa23.61■■□□□ 1.37
SQSTM1-210ENST00000506042 CATSPER4Q7RTX7 472 aa23.61■■□□□ 1.37
SQSTM1-210ENST00000506042 TDRD5Q8NAT2 981 aaKnown RBP23.61■■□□□ 1.37
SQSTM1-210ENST00000506042 VN1R2Q8NFZ6 395 aa23.61■■□□□ 1.37
SQSTM1-210ENST00000506042 FAM193BQ96PV7 902 aaPredicted RBP23.61■■□□□ 1.37
SQSTM1-210ENST00000506042 HCSTQ9UBK5 93 aa23.61■■□□□ 1.37
SQSTM1-210ENST00000506042 DPP7Q9UHL4 492 aa23.61■■□□□ 1.37
SQSTM1-210ENST00000506042 HCFC2Q9Y5Z7 792 aa23.61■■□□□ 1.37
SQSTM1-210ENST00000506042 CYP46A1Q9Y6A2 500 aa23.61■■□□□ 1.37
SQSTM1-210ENST00000506042 PIEZO1Q92508 2521 aa23.6■■□□□ 1.37
SQSTM1-210ENST00000506042 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP23.6■■□□□ 1.37
SQSTM1-210ENST00000506042 C2orf71A6NGG8 1288 aa23.6■■□□□ 1.37
SQSTM1-210ENST00000506042 DDX11L8A8MPP1 907 aa23.6■■□□□ 1.37
SQSTM1-210ENST00000506042 CPA1P15085 419 aa23.6■■□□□ 1.37
SQSTM1-210ENST00000506042 PHKA2P46019 1235 aa23.6■■□□□ 1.37
SQSTM1-210ENST00000506042 PSMC5P62195 406 aa23.6■■□□□ 1.37
SQSTM1-210ENST00000506042 NCBP1Q09161 790 aaKnown RBP23.6■■□□□ 1.37
SQSTM1-210ENST00000506042 CLLU1OSQ5K130 101 aa23.6■■□□□ 1.37
SQSTM1-210ENST00000506042 KRT25Q7Z3Z0 450 aa23.6■■□□□ 1.37
SQSTM1-210ENST00000506042 RHPN2Q8IUC4 686 aa23.6■■□□□ 1.37
SQSTM1-210ENST00000506042 BLIDQ8IZY5 108 aa23.6■■□□□ 1.37
SQSTM1-210ENST00000506042 VPS52Q8N1B4 723 aa23.6■■□□□ 1.37
SQSTM1-210ENST00000506042 APOL5Q9BWW9 433 aa23.6■■□□□ 1.37
SQSTM1-210ENST00000506042 EMILIN2Q9BXX0 1053 aa23.6■■□□□ 1.37
SQSTM1-210ENST00000506042 SLKQ9H2G2 1235 aaPredicted RBP23.6■■□□□ 1.37
SQSTM1-210ENST00000506042 KANSL3Q9P2N6 904 aa23.6■■□□□ 1.37
SQSTM1-210ENST00000506042 SUCLA2Q9P2R7 463 aaPredicted RBP23.6■■□□□ 1.37
SQSTM1-210ENST00000506042 DBR1Q9UK59 544 aaKnown RBP23.6■■□□□ 1.37
SQSTM1-210ENST00000506042 GAS2O43903 313 aaKnown RBP23.59■■□□□ 1.37
SQSTM1-210ENST00000506042 PSMD10O75832 226 aa23.59■■□□□ 1.37
SQSTM1-210ENST00000506042 PDIA3P30101 505 aaKnown RBP23.59■■□□□ 1.37
SQSTM1-210ENST00000506042 CCT2P78371 535 aaKnown RBP23.59■■□□□ 1.37
SQSTM1-210ENST00000506042 TARBP2Q15633 366 aaKnown RBP23.59■■□□□ 1.37
SQSTM1-210ENST00000506042 NTRK3Q16288 839 aa23.59■■□□□ 1.37
SQSTM1-210ENST00000506042 SYCE2Q6PIF2 218 aa23.59■■□□□ 1.37
SQSTM1-210ENST00000506042 ZNF598Q86UK7 904 aaKnown RBP23.59■■□□□ 1.37
SQSTM1-210ENST00000506042 ACSF2Q96CM8 615 aaPredicted RBP23.59■■□□□ 1.37
SQSTM1-210ENST00000506042 ZNF668Q96K58 619 aaPredicted RBP23.59■■□□□ 1.37
SQSTM1-210ENST00000506042 SSX2IPQ9Y2D8 614 aa23.59■■□□□ 1.37
SQSTM1-210ENST00000506042 CYP3A7-CYP3A51PA0A087WV96 503 aa23.58■■□□□ 1.37
SQSTM1-210ENST00000506042 CCDC194A0A1B0GVG4 234 aa23.58■■□□□ 1.37
SQSTM1-210ENST00000506042 ST18O60284 1047 aa23.58■■□□□ 1.37
SQSTM1-210ENST00000506042 GCFC2P16383 781 aaKnown RBP23.58■■□□□ 1.37
SQSTM1-210ENST00000506042 CYP3A7P24462 503 aa23.58■■□□□ 1.37
SQSTM1-210ENST00000506042 PBX3P40426 434 aa23.58■■□□□ 1.37
SQSTM1-210ENST00000506042 EVCP57679 992 aa23.58■■□□□ 1.37
SQSTM1-210ENST00000506042 RBM10P98175 930 aaKnown RBP23.58■■□□□ 1.37
SQSTM1-210ENST00000506042 NOMO2Q5JPE7 1267 aa23.58■■□□□ 1.37
SQSTM1-210ENST00000506042 RUFY3Q7L099 469 aa23.58■■□□□ 1.37
SQSTM1-210ENST00000506042 DDX53Q86TM3 631 aaKnown RBP23.58■■□□□ 1.37
SQSTM1-210ENST00000506042 CABP7Q86V35 215 aa23.58■■□□□ 1.37
SQSTM1-210ENST00000506042 NLRP4Q96MN2 994 aa23.58■■□□□ 1.37
SQSTM1-210ENST00000506042 MFSD1Q9H3U5 465 aa23.58■■□□□ 1.37
SQSTM1-210ENST00000506042 FAM105AQ9NUU6 356 aa23.58■■□□□ 1.37
SQSTM1-210ENST00000506042 RNF19AQ9NV58 838 aa23.58■■□□□ 1.37
SQSTM1-210ENST00000506042 DDX25Q9UHL0 483 aaKnown RBP23.58■■□□□ 1.37
SQSTM1-210ENST00000506042 IRAK3Q9Y616 596 aa23.58■■□□□ 1.37
SQSTM1-210ENST00000506042 CNTNAP2Q9UHC6 1331 aa23.58■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms