RNA–Protein interactions for RNA: ENST00000504489.3

PDLIM5-208, Transcript of PDZ and LIM domain 5, human

TSL 4 BASIC

Gene PDLIM5, Length 538 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PDLIM5-208	ENST00000504489	GPC3	P51654	580 aa		13.21	□□□□□ -0.29
PDLIM5-208	ENST00000504489	MCM6	Q14566	821 aa		13.21	□□□□□ -0.29
PDLIM5-208	ENST00000504489	CSPP1	Q1MSJ5	1256 aa		13.21	□□□□□ -0.29
PDLIM5-208	ENST00000504489	KIZ	Q2M2Z5	673 aa		13.21	□□□□□ -0.29
PDLIM5-208	ENST00000504489	FBXO47	Q5MNV8	452 aa		13.21	□□□□□ -0.29
PDLIM5-208	ENST00000504489	CLEC17A	Q6ZS10	378 aa		13.21	□□□□□ -0.29
PDLIM5-208	ENST00000504489	ZNF410	Q86VK4	478 aa		13.21	□□□□□ -0.29
PDLIM5-208	ENST00000504489	RHPN2	Q8IUC4	686 aa		13.21	□□□□□ -0.29
PDLIM5-208	ENST00000504489	PYM1	Q9BRP8	204 aa	Known RBP	13.21	□□□□□ -0.29
PDLIM5-208	ENST00000504489	RUSC1	Q9BVN2	902 aa		13.21	□□□□□ -0.29
PDLIM5-208	ENST00000504489	PANK2	Q9BZ23	570 aa		13.21	□□□□□ -0.29
PDLIM5-208	ENST00000504489	CUEDC2	Q9H467	287 aa		13.21	□□□□□ -0.29
PDLIM5-208	ENST00000504489	CDHR5	Q9HBB8	845 aa		13.21	□□□□□ -0.29
PDLIM5-208	ENST00000504489	PCDH10	Q9P2E7	1040 aa		13.21	□□□□□ -0.29
PDLIM5-208	ENST00000504489	COL4A3BP	Q9Y5P4	624 aa		13.21	□□□□□ -0.29
PDLIM5-208	ENST00000504489	CIT	O14578	2027 aa		13.2	□□□□□ -0.3
PDLIM5-208	ENST00000504489	SSB	P05455	408 aa	Known RBP eCLIP	13.2	□□□□□ -0.3
PDLIM5-208	ENST00000504489	EPHB4	P54760	987 aa		13.2	□□□□□ -0.3
PDLIM5-208	ENST00000504489	POU5F1B	Q06416	359 aa		13.2	□□□□□ -0.3
PDLIM5-208	ENST00000504489	LAMTOR4	Q0VGL1	99 aa		13.2	□□□□□ -0.3
PDLIM5-208	ENST00000504489	LPIN1	Q14693	890 aa		13.2	□□□□□ -0.3
PDLIM5-208	ENST00000504489	E2F4	Q16254	413 aa		13.2	□□□□□ -0.3
PDLIM5-208	ENST00000504489	PLEKHG4	Q58EX7	1191 aa		13.2	□□□□□ -0.3
PDLIM5-208	ENST00000504489	ARSH	Q5FYA8	562 aa		13.2	□□□□□ -0.3
PDLIM5-208	ENST00000504489	FAM102B	Q5T8I3	360 aa		13.2	□□□□□ -0.3
PDLIM5-208	ENST00000504489	PRPF38B	Q5VTL8	546 aa	Known RBP	13.2	□□□□□ -0.3
PDLIM5-208	ENST00000504489	TSHZ1	Q6ZSZ6	1077 aa		13.2	□□□□□ -0.3
PDLIM5-208	ENST00000504489	FAM43B	Q6ZT52	329 aa	Predicted RBP	13.2	□□□□□ -0.3
PDLIM5-208	ENST00000504489	SV2B	Q7L1I2	683 aa		13.2	□□□□□ -0.3
PDLIM5-208	ENST00000504489	C16orf59	Q7L2K0	433 aa		13.2	□□□□□ -0.3
PDLIM5-208	ENST00000504489	DEFB128	Q7Z7B8	93 aa		13.2	□□□□□ -0.3
PDLIM5-208	ENST00000504489	PDILT	Q8N807	584 aa		13.2	□□□□□ -0.3
PDLIM5-208	ENST00000504489	IQUB	Q8NA54	791 aa		13.2	□□□□□ -0.3
PDLIM5-208	ENST00000504489	KIFAP3	Q92845	792 aa		13.2	□□□□□ -0.3
PDLIM5-208	ENST00000504489	OSBPL7	Q9BZF2	842 aa		13.2	□□□□□ -0.3
PDLIM5-208	ENST00000504489	POLR3F	Q9H1D9	316 aa	Predicted RBP	13.2	□□□□□ -0.3
PDLIM5-208	ENST00000504489	KCNH3	Q9ULD8	1083 aa		13.2	□□□□□ -0.3
PDLIM5-208	ENST00000504489	HPSE	Q9Y251	543 aa		13.2	□□□□□ -0.3
PDLIM5-208	ENST00000504489	FNDC1	Q4ZHG4	1894 aa	Predicted RBP	13.19	□□□□□ -0.3
PDLIM5-208	ENST00000504489		A0A1B0GVL5	298 aa		13.19	□□□□□ -0.3
PDLIM5-208	ENST00000504489	POLR2D	O15514	142 aa	Known RBP	13.19	□□□□□ -0.3
PDLIM5-208	ENST00000504489	GHR	P10912	638 aa		13.19	□□□□□ -0.3
PDLIM5-208	ENST00000504489	GLRA2	P23416	452 aa		13.19	□□□□□ -0.3
PDLIM5-208	ENST00000504489	EIF4B	P23588	611 aa	Known RBP	13.19	□□□□□ -0.3
PDLIM5-208	ENST00000504489	MAPK7	Q13164	816 aa		13.19	□□□□□ -0.3
PDLIM5-208	ENST00000504489	TFDP1	Q14186	410 aa		13.19	□□□□□ -0.3
PDLIM5-208	ENST00000504489	DHX8	Q14562	1220 aa	Known RBP	13.19	□□□□□ -0.3
PDLIM5-208	ENST00000504489	TMEM240	Q5SV17	173 aa		13.19	□□□□□ -0.3
PDLIM5-208	ENST00000504489	ODR4	Q5SWX8	454 aa		13.19	□□□□□ -0.3
PDLIM5-208	ENST00000504489	CNKSR3	Q6P9H4	555 aa		13.19	□□□□□ -0.3
PDLIM5-208	ENST00000504489	PSRC1	Q6PGN9	363 aa	Predicted RBP	13.19	□□□□□ -0.3
PDLIM5-208	ENST00000504489	MAEA	Q7L5Y9	396 aa		13.19	□□□□□ -0.3
PDLIM5-208	ENST00000504489	GPBP1	Q86WP2	473 aa		13.19	□□□□□ -0.3
PDLIM5-208	ENST00000504489	KSR1	Q8IVT5	923 aa		13.19	□□□□□ -0.3
PDLIM5-208	ENST00000504489	DAW1	Q8N136	415 aa		13.19	□□□□□ -0.3
PDLIM5-208	ENST00000504489	TMEM87A	Q8NBN3	555 aa		13.19	□□□□□ -0.3
PDLIM5-208	ENST00000504489	ASAP3	Q8TDY4	903 aa		13.19	□□□□□ -0.3
PDLIM5-208	ENST00000504489	NLRP7	Q8WX94	980 aa		13.19	□□□□□ -0.3
PDLIM5-208	ENST00000504489	MRPS27	Q92552	414 aa	Known RBP	13.19	□□□□□ -0.3
PDLIM5-208	ENST00000504489	DRC1	Q96MC2	740 aa		13.19	□□□□□ -0.3
PDLIM5-208	ENST00000504489	NLRP4	Q96MN2	994 aa		13.19	□□□□□ -0.3
PDLIM5-208	ENST00000504489	PPP1R16B	Q96T49	567 aa		13.19	□□□□□ -0.3
PDLIM5-208	ENST00000504489	OSMR	Q99650	979 aa		13.19	□□□□□ -0.3
PDLIM5-208	ENST00000504489	GCOM2	Q9BZD3	368 aa	Predicted RBP	13.19	□□□□□ -0.3
PDLIM5-208	ENST00000504489	INO80B	Q9C086	356 aa	Predicted RBP	13.19	□□□□□ -0.3
PDLIM5-208	ENST00000504489	UBE2O	Q9C0C9	1292 aa	Known RBP	13.19	□□□□□ -0.3
PDLIM5-208	ENST00000504489	PRO3102	Q9H379	93 aa		13.19	□□□□□ -0.3
PDLIM5-208	ENST00000504489	GPRC5C	Q9NQ84	441 aa		13.19	□□□□□ -0.3
PDLIM5-208	ENST00000504489	USP25	Q9UHP3	1055 aa		13.19	□□□□□ -0.3
PDLIM5-208	ENST00000504489	GINS2	Q9Y248	185 aa		13.19	□□□□□ -0.3
PDLIM5-208	ENST00000504489	MYO9B	Q13459	2157 aa		13.19	□□□□□ -0.3
PDLIM5-208	ENST00000504489	TDRD15	B5MCY1	1934 aa	Known RBP	13.18	□□□□□ -0.3
PDLIM5-208	ENST00000504489		A0A087WZ62	844 aa		13.18	□□□□□ -0.3
PDLIM5-208	ENST00000504489	GOLGA6L4	A6NEF3	574 aa		13.18	□□□□□ -0.3
PDLIM5-208	ENST00000504489	HIP1R	O75146	1068 aa		13.18	□□□□□ -0.3
PDLIM5-208	ENST00000504489	FGB	P02675	491 aa		13.18	□□□□□ -0.3
PDLIM5-208	ENST00000504489	SRGAP2C	P0DJJ0	459 aa		13.18	□□□□□ -0.3
PDLIM5-208	ENST00000504489	ACR	P10323	421 aa		13.18	□□□□□ -0.3
PDLIM5-208	ENST00000504489	ACTN1	P12814	892 aa		13.18	□□□□□ -0.3
PDLIM5-208	ENST00000504489	DARS	P14868	501 aa	Known RBP	13.18	□□□□□ -0.3
PDLIM5-208	ENST00000504489	PFKFB1	P16118	471 aa		13.18	□□□□□ -0.3
PDLIM5-208	ENST00000504489	PTEN	P60484	403 aa		13.18	□□□□□ -0.3
PDLIM5-208	ENST00000504489	CAPS	Q13938	189 aa		13.18	□□□□□ -0.3
PDLIM5-208	ENST00000504489	PPP2R5A	Q15172	486 aa		13.18	□□□□□ -0.3
PDLIM5-208	ENST00000504489	ZNF365	Q70YC5	407 aa		13.18	□□□□□ -0.3
PDLIM5-208	ENST00000504489	SRGAP1	Q7Z6B7	1085 aa		13.18	□□□□□ -0.3
PDLIM5-208	ENST00000504489	FSIP1	Q8NA03	581 aa		13.18	□□□□□ -0.3
PDLIM5-208	ENST00000504489	RNF149	Q8NC42	400 aa		13.18	□□□□□ -0.3
PDLIM5-208	ENST00000504489	DBF4B	Q8NFT6	615 aa		13.18	□□□□□ -0.3
PDLIM5-208	ENST00000504489	TMEM40	Q8WWA1	233 aa		13.18	□□□□□ -0.3
PDLIM5-208	ENST00000504489	SEPT8	Q92599	483 aa		13.18	□□□□□ -0.3
PDLIM5-208	ENST00000504489	APBB2	Q92870	758 aa		13.18	□□□□□ -0.3
PDLIM5-208	ENST00000504489	DHX58	Q96C10	678 aa		13.18	□□□□□ -0.3
PDLIM5-208	ENST00000504489	ZNF668	Q96K58	619 aa	Predicted RBP	13.18	□□□□□ -0.3
PDLIM5-208	ENST00000504489	SCLT1	Q96NL6	688 aa		13.18	□□□□□ -0.3
PDLIM5-208	ENST00000504489	BUD13	Q9BRD0	619 aa	Known RBP eCLIP	13.18	□□□□□ -0.3
PDLIM5-208	ENST00000504489	FDXACB1	Q9BRP7	624 aa	Predicted RBP	13.18	□□□□□ -0.3
PDLIM5-208	ENST00000504489	NFKBIZ	Q9BYH8	718 aa		13.18	□□□□□ -0.3
PDLIM5-208	ENST00000504489	IFIH1	Q9BYX4	1025 aa	Known RBP	13.18	□□□□□ -0.3
PDLIM5-208	ENST00000504489	TNMD	Q9H2S6	317 aa		13.18	□□□□□ -0.3

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