RNA–Protein interactions for RNA: ENST00000498259.1

SF3A1-210, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 875 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-210ENST00000498259 ARIH2O95376 493 aa9.26□□□□□ -0.93
SF3A1-210ENST00000498259 LDHAP00338 332 aaKnown RBP9.26□□□□□ -0.93
SF3A1-210ENST00000498259 GNAT1P11488 350 aa9.26□□□□□ -0.93
SF3A1-210ENST00000498259 TRIM21P19474 475 aaKnown RBP9.26□□□□□ -0.93
SF3A1-210ENST00000498259 CYP2B6P20813 491 aa9.26□□□□□ -0.93
SF3A1-210ENST00000498259 ADCYAP1R1P41586 468 aa9.26□□□□□ -0.93
SF3A1-210ENST00000498259 NPTX2P47972 431 aa9.26□□□□□ -0.93
SF3A1-210ENST00000498259 PRMT2P55345 433 aa9.26□□□□□ -0.93
SF3A1-210ENST00000498259 LACTBP83111 547 aaPredicted RBP9.26□□□□□ -0.93
SF3A1-210ENST00000498259 POU5F1BQ06416 359 aa9.26□□□□□ -0.93
SF3A1-210ENST00000498259 NCBP1Q09161 790 aaKnown RBP9.26□□□□□ -0.93
SF3A1-210ENST00000498259 MAPK7Q13164 816 aa9.26□□□□□ -0.93
SF3A1-210ENST00000498259 TARBP2Q15633 366 aaKnown RBP9.26□□□□□ -0.93
SF3A1-210ENST00000498259 FIGNQ5HY92 759 aa9.26□□□□□ -0.93
SF3A1-210ENST00000498259 CEP135Q66GS9 1140 aa9.26□□□□□ -0.93
SF3A1-210ENST00000498259 LRRC55Q6ZSA7 311 aa9.26□□□□□ -0.93
SF3A1-210ENST00000498259 INTS8Q75QN2 995 aaKnown RBP9.26□□□□□ -0.93
SF3A1-210ENST00000498259 APBB1IPQ7Z5R6 666 aaPredicted RBP9.26□□□□□ -0.93
SF3A1-210ENST00000498259 DAW1Q8N136 415 aa9.26□□□□□ -0.93
SF3A1-210ENST00000498259 NPLOC4Q8TAT6 608 aa9.26□□□□□ -0.93
SF3A1-210ENST00000498259 USP6NLQ92738 828 aa9.26□□□□□ -0.93
SF3A1-210ENST00000498259 BICD1Q96G01 975 aa9.26□□□□□ -0.93
SF3A1-210ENST00000498259 PANX2Q96RD6 677 aa9.26□□□□□ -0.93
SF3A1-210ENST00000498259 STRA6Q9BX79 667 aa9.26□□□□□ -0.93
SF3A1-210ENST00000498259 EDEM3Q9BZQ6 932 aa9.26□□□□□ -0.93
SF3A1-210ENST00000498259 POLR3FQ9H1D9 316 aaPredicted RBP9.26□□□□□ -0.93
SF3A1-210ENST00000498259 TUT1Q9H6E5 874 aaKnown RBP9.26□□□□□ -0.93
SF3A1-210ENST00000498259 TMEM134Q9H6X4 195 aa9.26□□□□□ -0.93
SF3A1-210ENST00000498259 PDGFCQ9NRA1 345 aa9.26□□□□□ -0.93
SF3A1-210ENST00000498259 AGPAT3Q9NRZ7 376 aa9.26□□□□□ -0.93
SF3A1-210ENST00000498259 LUC7L2Q9Y383 392 aaKnown RBP9.26□□□□□ -0.93
SF3A1-210ENST00000498259 KIAA1217Q5T5P2 1943 aa9.25□□□□□ -0.93
SF3A1-210ENST00000498259 GTPBP10A4D1E9 387 aaKnown RBP9.25□□□□□ -0.93
SF3A1-210ENST00000498259 LRRIQ4A6NIV6 560 aa9.25□□□□□ -0.93
SF3A1-210ENST00000498259 A6NJR5 290 aa9.25□□□□□ -0.93
SF3A1-210ENST00000498259 SLC16A4O15374 487 aa9.25□□□□□ -0.93
SF3A1-210ENST00000498259 AFPP02771 609 aaKnown RBP9.25□□□□□ -0.93
SF3A1-210ENST00000498259 TUBB4AP04350 444 aa9.25□□□□□ -0.93
SF3A1-210ENST00000498259 LGALS2P05162 132 aa9.25□□□□□ -0.93
SF3A1-210ENST00000498259 SKILP12757 684 aa9.25□□□□□ -0.93
SF3A1-210ENST00000498259 SMPD1P17405 629 aa9.25□□□□□ -0.93
SF3A1-210ENST00000498259 GARTP22102 1010 aa9.25□□□□□ -0.93
SF3A1-210ENST00000498259 PTGS1P23219 599 aa9.25□□□□□ -0.93
SF3A1-210ENST00000498259 ARL2P36404 184 aa9.25□□□□□ -0.93
SF3A1-210ENST00000498259 KCNJ6P48051 423 aa9.25□□□□□ -0.93
SF3A1-210ENST00000498259 LIG4P49917 911 aa9.25□□□□□ -0.93
SF3A1-210ENST00000498259 CASP5P51878 434 aa9.25□□□□□ -0.93
SF3A1-210ENST00000498259 PLCB4Q15147 1175 aa9.25□□□□□ -0.93
SF3A1-210ENST00000498259 PCBP1Q15365 356 aaKnown RBP eCLIP9.25□□□□□ -0.936e-6■□□□□ 9.5
SF3A1-210ENST00000498259 ARMCX5Q6P1M9 558 aa9.25□□□□□ -0.93
SF3A1-210ENST00000498259 IRF2BP1Q8IU81 584 aa9.25□□□□□ -0.93
SF3A1-210ENST00000498259 MAP4K3Q8IVH8 894 aa9.25□□□□□ -0.93
SF3A1-210ENST00000498259 FAM186BQ8IYM0 893 aa9.25□□□□□ -0.93
SF3A1-210ENST00000498259 XXYLT1Q8NBI6 393 aa9.25□□□□□ -0.93
SF3A1-210ENST00000498259 TMEM161BQ8NDZ6 487 aa9.25□□□□□ -0.93
SF3A1-210ENST00000498259 AFG1LQ8WV93 481 aa9.25□□□□□ -0.93
SF3A1-210ENST00000498259 VTI1AQ96AJ9 217 aa9.25□□□□□ -0.93
SF3A1-210ENST00000498259 ERO1AQ96HE7 468 aa9.25□□□□□ -0.93
SF3A1-210ENST00000498259 ERGIC2Q96RQ1 377 aa9.25□□□□□ -0.93
SF3A1-210ENST00000498259 MAP7D2Q96T17 732 aa9.25□□□□□ -0.93
SF3A1-210ENST00000498259 BEGAINQ9BUH8 593 aa9.25□□□□□ -0.93
SF3A1-210ENST00000498259 KATNBL1Q9H079 304 aa9.25□□□□□ -0.93
SF3A1-210ENST00000498259 GJD2Q9UKL4 321 aa9.25□□□□□ -0.93
SF3A1-210ENST00000498259 PLXNB2O15031 1838 aa9.25□□□□□ -0.93
SF3A1-210ENST00000498259 NRCAMQ92823 1304 aa9.25□□□□□ -0.93
SF3A1-210ENST00000498259 A0A1W2PQJ5 194 aa9.24□□□□□ -0.93
SF3A1-210ENST00000498259 GOLGA6L9A6NEM1 432 aa9.24□□□□□ -0.93
SF3A1-210ENST00000498259 HNRNPDLO14979 420 aaKnown RBP9.24□□□□□ -0.93
SF3A1-210ENST00000498259 P4HA2O15460 535 aa9.24□□□□□ -0.93
SF3A1-210ENST00000498259 ARHGAP6O43182 974 aa9.24□□□□□ -0.93
SF3A1-210ENST00000498259 DYNC1LI2O43237 492 aaPredicted RBP9.24□□□□□ -0.93
SF3A1-210ENST00000498259 TGFB1I1O43294 461 aa9.24□□□□□ -0.93
SF3A1-210ENST00000498259 ZSCAN12O43309 604 aa9.24□□□□□ -0.93
SF3A1-210ENST00000498259 DUSP11O75319 330 aaKnown RBP9.24□□□□□ -0.93
SF3A1-210ENST00000498259 IPO7O95373 1038 aaKnown RBP9.24□□□□□ -0.93
SF3A1-210ENST00000498259 MMP3P08254 477 aa9.24□□□□□ -0.93
SF3A1-210ENST00000498259 CCDC172P0C7W6 258 aa9.24□□□□□ -0.93
SF3A1-210ENST00000498259 HOXD8P13378 290 aaPredicted RBP9.24□□□□□ -0.93
SF3A1-210ENST00000498259 ATP4AP20648 1035 aa9.24□□□□□ -0.93
SF3A1-210ENST00000498259 MARK3P27448 753 aa9.24□□□□□ -0.93
SF3A1-210ENST00000498259 CNGA1P29973 690 aa9.24□□□□□ -0.93
SF3A1-210ENST00000498259 TBX2Q13207 712 aaPredicted RBP9.24□□□□□ -0.93
SF3A1-210ENST00000498259 MAPK6Q16659 721 aa9.24□□□□□ -0.93
SF3A1-210ENST00000498259 KYAT1Q16773 422 aa9.24□□□□□ -0.93
SF3A1-210ENST00000498259 ZC2HC1CQ53FD0 456 aaPredicted RBP9.24□□□□□ -0.93
SF3A1-210ENST00000498259 TCERG1LQ5VWI1 586 aa9.24□□□□□ -0.93
SF3A1-210ENST00000498259 ZPBP2Q6X784 338 aa9.24□□□□□ -0.93
SF3A1-210ENST00000498259 APTXQ7Z2E3 356 aaKnown RBP9.24□□□□□ -0.93
SF3A1-210ENST00000498259 CACNA2D4Q7Z3S7 1137 aa9.24□□□□□ -0.93
SF3A1-210ENST00000498259 TLK2Q86UE8 772 aa9.24□□□□□ -0.93
SF3A1-210ENST00000498259 TMTC1Q8IUR5 882 aa9.24□□□□□ -0.93
SF3A1-210ENST00000498259 TRIM59Q8IWR1 403 aa9.24□□□□□ -0.93
SF3A1-210ENST00000498259 TXLNBQ8N3L3 684 aa9.24□□□□□ -0.93
SF3A1-210ENST00000498259 METTL13Q8N6R0 699 aa9.24□□□□□ -0.93
SF3A1-210ENST00000498259 NEK11Q8NG66 645 aa9.24□□□□□ -0.93
SF3A1-210ENST00000498259 FAM81BQ96LP2 452 aa9.24□□□□□ -0.93
SF3A1-210ENST00000498259 FIZ1Q96SL8 496 aa9.24□□□□□ -0.93
SF3A1-210ENST00000498259 PCYT2Q99447 389 aa9.24□□□□□ -0.93
SF3A1-210ENST00000498259 BAG1Q99933 345 aaPredicted RBP9.24□□□□□ -0.93
SF3A1-210ENST00000498259 NFKBIZQ9BYH8 718 aa9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms