RNA–Protein interactions for RNA: ENST00000496622.1

SSBP1-213, Transcript of single stranded DNA binding protein 1, humanhuman

TSL 1 (best)

Gene SSBP1, Length 2,620 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP1-213ENST00000496622 KIAA1024Q9UPX6 916 aa6.78□□□□□ -1.32
SSBP1-213ENST00000496622 ZNF646O15015 1829 aaPredicted RBP6.77□□□□□ -1.33
SSBP1-213ENST00000496622 EME2A4GXA9 379 aaPredicted RBP6.77□□□□□ -1.33
SSBP1-213ENST00000496622 FIGNL2A6NMB9 653 aa6.77□□□□□ -1.33
SSBP1-213ENST00000496622 F8VZ95 297 aa6.77□□□□□ -1.33
SSBP1-213ENST00000496622 EML1O00423 815 aa6.77□□□□□ -1.33
SSBP1-213ENST00000496622 KLRC4O43908 158 aa6.77□□□□□ -1.33
SSBP1-213ENST00000496622 MED24O75448 989 aa6.77□□□□□ -1.33
SSBP1-213ENST00000496622 TPM1P09493 284 aa6.77□□□□□ -1.33
SSBP1-213ENST00000496622 IL4RP24394 825 aa6.77□□□□□ -1.33
SSBP1-213ENST00000496622 ZNF76P36508 570 aa6.77□□□□□ -1.33
SSBP1-213ENST00000496622 GJA8P48165 433 aa6.77□□□□□ -1.33
SSBP1-213ENST00000496622 ADKP55263 362 aaKnown RBP6.77□□□□□ -1.33
SSBP1-213ENST00000496622 TNFAIP1Q13829 316 aa6.77□□□□□ -1.33
SSBP1-213ENST00000496622 CEP135Q66GS9 1140 aa6.77□□□□□ -1.33
SSBP1-213ENST00000496622 NCAPH2Q6IBW4 605 aa6.77□□□□□ -1.33
SSBP1-213ENST00000496622 KANK3Q6NY19 840 aa6.77□□□□□ -1.33
SSBP1-213ENST00000496622 CC2D1AQ6P1N0 951 aaPredicted RBP6.77□□□□□ -1.33
SSBP1-213ENST00000496622 BTNL9Q6UXG8 535 aa6.77□□□□□ -1.33
SSBP1-213ENST00000496622 LRRC8AQ8IWT6 810 aa6.77□□□□□ -1.33
SSBP1-213ENST00000496622 KRT222Q8N1A0 295 aa6.77□□□□□ -1.33
SSBP1-213ENST00000496622 MLKLQ8NB16 471 aa6.77□□□□□ -1.33
SSBP1-213ENST00000496622 ATG4CQ96DT6 458 aa6.77□□□□□ -1.33
SSBP1-213ENST00000496622 WDR18Q9BV38 432 aa6.77□□□□□ -1.33
SSBP1-213ENST00000496622 INO80BQ9C086 356 aaPredicted RBP6.77□□□□□ -1.33
SSBP1-213ENST00000496622 CCSER1Q9C0I3 900 aa6.77□□□□□ -1.33
SSBP1-213ENST00000496622 SLC7A5P2Q9GIP4 190 aa6.77□□□□□ -1.33
SSBP1-213ENST00000496622 R3HDMLQ9H3Y0 253 aa6.77□□□□□ -1.33
SSBP1-213ENST00000496622 PRM3Q9NNZ6 103 aa6.77□□□□□ -1.33
SSBP1-213ENST00000496622 GINM1Q9NU53 330 aa6.77□□□□□ -1.33
SSBP1-213ENST00000496622 SPATA7Q9P0W8 599 aa6.77□□□□□ -1.33
SSBP1-213ENST00000496622 CCPG1Q9ULG6 757 aa6.77□□□□□ -1.33
SSBP1-213ENST00000496622 FOCADQ5VW36 1801 aa6.77□□□□□ -1.33
SSBP1-213ENST00000496622 SFI1A8K8P3 1242 aa6.77□□□□□ -1.33
SSBP1-213ENST00000496622 SMTNL1A8MU46 457 aa6.77□□□□□ -1.33
SSBP1-213ENST00000496622 IKBKBO14920 756 aa6.77□□□□□ -1.33
SSBP1-213ENST00000496622 MSH4O15457 936 aa6.77□□□□□ -1.33
SSBP1-213ENST00000496622 KRT38O76015 456 aa6.77□□□□□ -1.33
SSBP1-213ENST00000496622 MYL1P05976 194 aa6.77□□□□□ -1.33
SSBP1-213ENST00000496622 ZNF18P17022 549 aa6.77□□□□□ -1.33
SSBP1-213ENST00000496622 PRPHP41219 470 aa6.77□□□□□ -1.33
SSBP1-213ENST00000496622 POU5F1Q01860 360 aaKnown RBP6.77□□□□□ -1.33
SSBP1-213ENST00000496622 MAP3K10Q02779 954 aa6.77□□□□□ -1.33
SSBP1-213ENST00000496622 GRIK3Q13003 919 aa6.77□□□□□ -1.33
SSBP1-213ENST00000496622 RBBP5Q15291 538 aaKnown RBP6.77□□□□□ -1.33
SSBP1-213ENST00000496622 OXLD1Q5BKU9 147 aa6.77□□□□□ -1.33
SSBP1-213ENST00000496622 C9orf131Q5VYM1 1079 aa6.77□□□□□ -1.33
SSBP1-213ENST00000496622 PPP4R3AQ6IN85 833 aa6.77□□□□□ -1.33
SSBP1-213ENST00000496622 ANKRD13BQ86YJ7 626 aa6.77□□□□□ -1.33
SSBP1-213ENST00000496622 KIAA1524Q8TCG1 905 aa6.77□□□□□ -1.33
SSBP1-213ENST00000496622 PIGOQ8TEQ8 1089 aa6.77□□□□□ -1.33
SSBP1-213ENST00000496622 NELFBQ8WX92 580 aa6.77□□□□□ -1.33
SSBP1-213ENST00000496622 CRYGNQ8WXF5 182 aa6.77□□□□□ -1.33
SSBP1-213ENST00000496622 HOOK2Q96ED9 719 aa6.77□□□□□ -1.33
SSBP1-213ENST00000496622 C16orf45Q96MC5 204 aaPredicted RBP6.77□□□□□ -1.33
SSBP1-213ENST00000496622 BPIFA3Q9BQP9 254 aa6.77□□□□□ -1.33
SSBP1-213ENST00000496622 VPS16Q9H269 839 aa6.77□□□□□ -1.33
SSBP1-213ENST00000496622 IKZF4Q9H2S9 585 aa6.77□□□□□ -1.33
SSBP1-213ENST00000496622 ZHX3Q9H4I2 956 aa6.77□□□□□ -1.33
SSBP1-213ENST00000496622 RPAP3Q9H6T3 665 aaPredicted RBP6.77□□□□□ -1.33
SSBP1-213ENST00000496622 KIAA1522Q9P206 1035 aaPredicted RBP6.77□□□□□ -1.33
SSBP1-213ENST00000496622 TMEM98Q9Y2Y6 226 aa6.77□□□□□ -1.33
SSBP1-213ENST00000496622 ABCB11O95342 1321 aa6.76□□□□□ -1.33
SSBP1-213ENST00000496622 hCG_1984214I3L0E3 225 aa6.76□□□□□ -1.33
SSBP1-213ENST00000496622 LAD1O00515 517 aa6.76□□□□□ -1.33
SSBP1-213ENST00000496622 SNUPNO95149 360 aaKnown RBP6.76□□□□□ -1.33
SSBP1-213ENST00000496622 ARP10275 920 aa6.76□□□□□ -1.33
SSBP1-213ENST00000496622 VDRP11473 427 aa6.76□□□□□ -1.33
SSBP1-213ENST00000496622 PTPRAP18433 802 aa6.76□□□□□ -1.33
SSBP1-213ENST00000496622 CYP11B2P19099 503 aa6.76□□□□□ -1.33
SSBP1-213ENST00000496622 RPS12P25398 132 aaKnown RBP6.76□□□□□ -1.33
SSBP1-213ENST00000496622 CTSOP43234 321 aaPredicted RBP6.76□□□□□ -1.33
SSBP1-213ENST00000496622 MAGEA10P43363 369 aaPredicted RBP6.76□□□□□ -1.33
SSBP1-213ENST00000496622 CCNHP51946 323 aaPredicted RBP6.76□□□□□ -1.33
SSBP1-213ENST00000496622 SESN3P58005 492 aa6.76□□□□□ -1.33
SSBP1-213ENST00000496622 PABPC4Q13310 644 aaKnown RBP eCLIP6.76□□□□□ -1.33
SSBP1-213ENST00000496622 KRT79Q5XKE5 535 aa6.76□□□□□ -1.33
SSBP1-213ENST00000496622 NSMFQ6X4W1 530 aa6.76□□□□□ -1.33
SSBP1-213ENST00000496622 CATSPER3Q86XQ3 398 aa6.76□□□□□ -1.33
SSBP1-213ENST00000496622 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP6.76□□□□□ -1.33
SSBP1-213ENST00000496622 ZNF713Q8N859 430 aaPredicted RBP6.76□□□□□ -1.33
SSBP1-213ENST00000496622 KIAA0895Q8NCT3 520 aa6.76□□□□□ -1.33
SSBP1-213ENST00000496622 LARP4BQ92615 738 aaKnown RBP6.76□□□□□ -1.33
SSBP1-213ENST00000496622 CDK5RAP3Q96JB5 506 aa6.76□□□□□ -1.33
SSBP1-213ENST00000496622 JADE2Q9NQC1 790 aa6.76□□□□□ -1.33
SSBP1-213ENST00000496622 SPATS2LQ9NUQ6 558 aaKnown RBP6.76□□□□□ -1.33
SSBP1-213ENST00000496622 WDR3Q9UNX4 943 aaKnown RBP eCLIP6.76□□□□□ -1.33
SSBP1-213ENST00000496622 MYH4Q9Y623 1939 aa6.76□□□□□ -1.33
SSBP1-213ENST00000496622 CTNND1O60716 968 aaKnown RBP6.76□□□□□ -1.33
SSBP1-213ENST00000496622 EIF2AK2P19525 551 aaKnown RBP6.76□□□□□ -1.33
SSBP1-213ENST00000496622 ENPP1P22413 925 aa6.76□□□□□ -1.33
SSBP1-213ENST00000496622 SPIRE1Q08AE8 756 aa6.76□□□□□ -1.33
SSBP1-213ENST00000496622 NSUN2Q08J23 767 aaKnown RBP eCLIP6.76□□□□□ -1.33
SSBP1-213ENST00000496622 USP4Q13107 963 aa6.76□□□□□ -1.33
SSBP1-213ENST00000496622 CTTNQ14247 550 aaKnown RBP6.76□□□□□ -1.33
SSBP1-213ENST00000496622 PDIA5Q14554 519 aa6.76□□□□□ -1.33
SSBP1-213ENST00000496622 PLS1Q14651 629 aa6.76□□□□□ -1.33
SSBP1-213ENST00000496622 TPD52L1Q16890 204 aaPredicted RBP6.76□□□□□ -1.33
SSBP1-213ENST00000496622 ACBD5Q5T8D3 534 aaPredicted RBP6.76□□□□□ -1.33
SSBP1-213ENST00000496622 APTXQ7Z2E3 356 aaKnown RBP6.76□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms