RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 PROM2Q8N271 834 aa14.06□□□□□ -0.16
PTPRF-215ENST00000496447 UBE4BO95155 1302 aa14.06□□□□□ -0.16
PTPRF-215ENST00000496447 RFX7Q2KHR2 1363 aa14.06□□□□□ -0.16
PTPRF-215ENST00000496447 CREB3O43889 395 aa14.06□□□□□ -0.16
PTPRF-215ENST00000496447 ORC4O43929 436 aa14.06□□□□□ -0.16
PTPRF-215ENST00000496447 OPHN1O60890 802 aa14.06□□□□□ -0.16
PTPRF-215ENST00000496447 PPFIA2O75334 1257 aa14.06□□□□□ -0.16
PTPRF-215ENST00000496447 TXNP10599 105 aaKnown RBP14.06□□□□□ -0.16
PTPRF-215ENST00000496447 CNOT8Q9UFF9 292 aaKnown RBP14.06□□□□□ -0.16
PTPRF-215ENST00000496447 SCOCQ9UIL1 159 aa14.06□□□□□ -0.16
PTPRF-215ENST00000496447 M0QYV0 167 aa14.05□□□□□ -0.16
PTPRF-215ENST00000496447 NEMP1O14524 444 aa14.05□□□□□ -0.16
PTPRF-215ENST00000496447 TJP3O95049 919 aa14.05□□□□□ -0.16
PTPRF-215ENST00000496447 NNMTP40261 264 aa14.05□□□□□ -0.16
PTPRF-215ENST00000496447 COG2Q14746 738 aa14.05□□□□□ -0.16
PTPRF-215ENST00000496447 ZNF579Q8NAF0 562 aaKnown RBP14.05□□□□□ -0.16
PTPRF-215ENST00000496447 GEMIN8Q9NWZ8 242 aaKnown RBP14.05□□□□□ -0.16
PTPRF-215ENST00000496447 GLI2P10070 1586 aa14.05□□□□□ -0.16
PTPRF-215ENST00000496447 DHX9Q08211 1270 aaKnown RBP14.05□□□□□ -0.16
PTPRF-215ENST00000496447 PDIK1LQ8N165 341 aa14.05□□□□□ -0.16
PTPRF-215ENST00000496447 Q9H521 79 aa14.05□□□□□ -0.16
PTPRF-215ENST00000496447 KLHL8Q9P2G9 620 aaPredicted RBP14.05□□□□□ -0.16
PTPRF-215ENST00000496447 ANAPC7Q9UJX3 599 aa14.05□□□□□ -0.16
PTPRF-215ENST00000496447 STRIP2Q9ULQ0 834 aa14.05□□□□□ -0.16
PTPRF-215ENST00000496447 PVALEFA0A1B0GWK0 134 aa14.05□□□□□ -0.16
PTPRF-215ENST00000496447 CALB1P05937 261 aa14.05□□□□□ -0.16
PTPRF-215ENST00000496447 CPB1P15086 417 aa14.05□□□□□ -0.16
PTPRF-215ENST00000496447 DR1Q01658 176 aa14.05□□□□□ -0.16
PTPRF-215ENST00000496447 RCN2Q14257 317 aa14.05□□□□□ -0.16
PTPRF-215ENST00000496447 KIAA1755Q5JYT7 1200 aa14.05□□□□□ -0.16
PTPRF-215ENST00000496447 KLC3Q6P597 504 aa14.05□□□□□ -0.16
PTPRF-215ENST00000496447 RBM46Q8TBY0 533 aaKnown RBP14.05□□□□□ -0.16
PTPRF-215ENST00000496447 FAF2Q96CS3 445 aa14.05□□□□□ -0.16
PTPRF-215ENST00000496447 OLA1Q9NTK5 396 aaKnown RBP14.05□□□□□ -0.16
PTPRF-215ENST00000496447 DAGLAQ9Y4D2 1042 aa14.05□□□□□ -0.16
PTPRF-215ENST00000496447 PCDHA10Q9Y5I2 948 aa14.05□□□□□ -0.16
PTPRF-215ENST00000496447 ZMYND10O75800 440 aa14.05□□□□□ -0.16
PTPRF-215ENST00000496447 PAMP19021 973 aa14.05□□□□□ -0.16
PTPRF-215ENST00000496447 TBXAS1P24557 533 aaPredicted RBP14.05□□□□□ -0.16
PTPRF-215ENST00000496447 IL1RL1Q01638 556 aa14.05□□□□□ -0.16
PTPRF-215ENST00000496447 PDCD6IPQ8WUM4 868 aaKnown RBP14.05□□□□□ -0.16
PTPRF-215ENST00000496447 PANX2Q96RD6 677 aa14.05□□□□□ -0.16
PTPRF-215ENST00000496447 NRKQ7Z2Y5 1582 aa14.05□□□□□ -0.16
PTPRF-215ENST00000496447 TRIM28Q13263 835 aaKnown RBP14.05□□□□□ -0.16
PTPRF-215ENST00000496447 SNAPC2Q13487 334 aa14.05□□□□□ -0.16
PTPRF-215ENST00000496447 NBPF9Q3BBW0 867 aa14.05□□□□□ -0.16
PTPRF-215ENST00000496447 CDC26Q8NHZ8 85 aa14.05□□□□□ -0.16
PTPRF-215ENST00000496447 KLC2Q9H0B6 622 aa14.05□□□□□ -0.16
PTPRF-215ENST00000496447 OSBPL5Q9H0X9 879 aaPredicted RBP14.05□□□□□ -0.16
PTPRF-215ENST00000496447 SEL1LQ9UBV2 794 aa14.05□□□□□ -0.16
PTPRF-215ENST00000496447 TOM1L1O75674 476 aa14.04□□□□□ -0.16
PTPRF-215ENST00000496447 CYP2C19P33261 490 aa14.04□□□□□ -0.16
PTPRF-215ENST00000496447 SERPINB6P35237 376 aa14.04□□□□□ -0.16
PTPRF-215ENST00000496447 DYNC1I2Q13409 638 aaKnown RBP14.04□□□□□ -0.16
PTPRF-215ENST00000496447 KNOP1Q1ED39 458 aaKnown RBP14.04□□□□□ -0.16
PTPRF-215ENST00000496447 CYFIP1Q7L576 1253 aa14.04□□□□□ -0.16
PTPRF-215ENST00000496447 VPS39Q96JC1 886 aa14.04□□□□□ -0.16
PTPRF-215ENST00000496447 MMTAG2Q9BU76 263 aaKnown RBP14.04□□□□□ -0.16
PTPRF-215ENST00000496447 CEP72Q9P209 647 aa14.04□□□□□ -0.16
PTPRF-215ENST00000496447 TTI1O43156 1089 aa14.04□□□□□ -0.16
PTPRF-215ENST00000496447 SUN1O94901 812 aa14.04□□□□□ -0.16
PTPRF-215ENST00000496447 VAMP7P51809 220 aa14.04□□□□□ -0.16
PTPRF-215ENST00000496447 SRLQ86TD4 932 aa14.04□□□□□ -0.16
PTPRF-215ENST00000496447 PARK7Q99497 189 aaKnown RBP14.04□□□□□ -0.16
PTPRF-215ENST00000496447 AP1M1Q9BXS5 423 aa14.04□□□□□ -0.16
PTPRF-215ENST00000496447 JPH1Q9HDC5 661 aaPredicted RBP14.04□□□□□ -0.16
PTPRF-215ENST00000496447 MID2Q9UJV3 735 aa14.04□□□□□ -0.16
PTPRF-215ENST00000496447 STAP1Q9ULZ2 295 aa14.04□□□□□ -0.16
PTPRF-215ENST00000496447 PNPLA7Q6ZV29 1317 aa14.04□□□□□ -0.16
PTPRF-215ENST00000496447 EXOC1LA0A1B0GW35 172 aa14.04□□□□□ -0.16
PTPRF-215ENST00000496447 USP11P51784 963 aa14.04□□□□□ -0.16
PTPRF-215ENST00000496447 CENPUQ71F23 418 aa14.04□□□□□ -0.16
PTPRF-215ENST00000496447 IFT43Q96FT9 208 aa14.04□□□□□ -0.16
PTPRF-215ENST00000496447 EIF2AK1Q9BQI3 630 aaKnown RBP14.04□□□□□ -0.16
PTPRF-215ENST00000496447 FSD1LQ9BXM9 530 aa14.04□□□□□ -0.16
PTPRF-215ENST00000496447 FAM217BQ9NTX9 383 aaPredicted RBP14.04□□□□□ -0.16
PTPRF-215ENST00000496447 GINM1Q9NU53 330 aa14.04□□□□□ -0.16
PTPRF-215ENST00000496447 TBK1Q9UHD2 729 aa14.04□□□□□ -0.16
PTPRF-215ENST00000496447 TRIM49BA6NDI0 452 aa14.04□□□□□ -0.16
PTPRF-215ENST00000496447 CDC27P30260 824 aa14.04□□□□□ -0.16
PTPRF-215ENST00000496447 TAF11Q15544 211 aa14.04□□□□□ -0.16
PTPRF-215ENST00000496447 C12orf60Q5U649 245 aa14.04□□□□□ -0.16
PTPRF-215ENST00000496447 PYROXD1Q8WU10 500 aa14.04□□□□□ -0.16
PTPRF-215ENST00000496447 NSUN4Q96CB9 384 aaKnown RBP14.04□□□□□ -0.16
PTPRF-215ENST00000496447 RBM41Q96IZ5 413 aaKnown RBP14.04□□□□□ -0.16
PTPRF-215ENST00000496447 LCMT1Q9UIC8 334 aa14.04□□□□□ -0.16
PTPRF-215ENST00000496447 ADGRB3O60242 1522 aa14.04□□□□□ -0.16
PTPRF-215ENST00000496447 SPATA31A1Q5TZJ5 1347 aa14.04□□□□□ -0.16
PTPRF-215ENST00000496447 ERCC6L2Q5T890 1561 aa14.04□□□□□ -0.16
PTPRF-215ENST00000496447 KBTBD13C9JR72 458 aa14.03□□□□□ -0.16
PTPRF-215ENST00000496447 EVI5O60447 810 aa14.03□□□□□ -0.16
PTPRF-215ENST00000496447 TDP2O95551 362 aa14.03□□□□□ -0.16
PTPRF-215ENST00000496447 SDC4P31431 198 aa14.03□□□□□ -0.16
PTPRF-215ENST00000496447 TFDP2Q14188 446 aa14.03□□□□□ -0.16
PTPRF-215ENST00000496447 NOP53Q9NZM5 478 aaKnown RBP14.03□□□□□ -0.16
PTPRF-215ENST00000496447 CLTCL1P53675 1640 aa14.03□□□□□ -0.16
PTPRF-215ENST00000496447 C1orf167Q5SNV9 1468 aa14.03□□□□□ -0.16
PTPRF-215ENST00000496447 C19orf81C9J6K1 198 aa14.03□□□□□ -0.16
PTPRF-215ENST00000496447 ADORA2BP29275 332 aa14.03□□□□□ -0.16
PTPRF-215ENST00000496447 ZFYVE28Q9HCC9 887 aa14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 79.3 ms