RNA–Protein interactions for RNA: ENST00000496043.5

PTPRF-214, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 415 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-214ENST00000496043 IRS1P35568 1242 aa14.25□□□□□ -0.13
PTPRF-214ENST00000496043 LTBRP36941 435 aa14.25□□□□□ -0.13
PTPRF-214ENST00000496043 FOSBP53539 338 aa14.25□□□□□ -0.13
PTPRF-214ENST00000496043 POLGP54098 1239 aaPredicted RBP14.25□□□□□ -0.13
PTPRF-214ENST00000496043 SPIRE1Q08AE8 756 aa14.25□□□□□ -0.13
PTPRF-214ENST00000496043 CTTNQ14247 550 aaKnown RBP14.25□□□□□ -0.13
PTPRF-214ENST00000496043 XKR9Q5GH70 373 aa14.25□□□□□ -0.13
PTPRF-214ENST00000496043 PDE12Q6L8Q7 609 aaKnown RBP14.25□□□□□ -0.13
PTPRF-214ENST00000496043 KSR1Q8IVT5 923 aa14.25□□□□□ -0.13
PTPRF-214ENST00000496043 GJD3Q8N144 294 aa14.25□□□□□ -0.13
PTPRF-214ENST00000496043 ZNF579Q8NAF0 562 aaKnown RBP14.25□□□□□ -0.13
PTPRF-214ENST00000496043 TCP11Q8WWU5 503 aa14.25□□□□□ -0.13
PTPRF-214ENST00000496043 PRPF31Q8WWY3 499 aaKnown RBP14.25□□□□□ -0.13
PTPRF-214ENST00000496043 NLRP4Q96MN2 994 aa14.25□□□□□ -0.13
PTPRF-214ENST00000496043 LLPHQ9BRT6 129 aaKnown RBP14.25□□□□□ -0.13
PTPRF-214ENST00000496043 LXNQ9BS40 222 aa14.25□□□□□ -0.13
PTPRF-214ENST00000496043 DHX33Q9H6R0 707 aaKnown RBP14.25□□□□□ -0.13
PTPRF-214ENST00000496043 RNF19AQ9NV58 838 aa14.25□□□□□ -0.13
PTPRF-214ENST00000496043 WRAP73Q9P2S5 460 aaPredicted RBP14.25□□□□□ -0.13
PTPRF-214ENST00000496043 GAS2O43903 313 aaKnown RBP14.24□□□□□ -0.13
PTPRF-214ENST00000496043 SRGAP2CP0DJJ0 459 aa14.24□□□□□ -0.13
PTPRF-214ENST00000496043 GTF2F1P35269 517 aaKnown RBP eCLIP14.24□□□□□ -0.13
PTPRF-214ENST00000496043 TXKP42681 527 aa14.24□□□□□ -0.13
PTPRF-214ENST00000496043 PLCB3Q01970 1234 aa14.24□□□□□ -0.13
PTPRF-214ENST00000496043 CYP4A11Q02928 519 aa14.24□□□□□ -0.13
PTPRF-214ENST00000496043 KRT17Q04695 432 aa14.24□□□□□ -0.13
PTPRF-214ENST00000496043 TWF2Q6IBS0 349 aaKnown RBP14.24□□□□□ -0.13
PTPRF-214ENST00000496043 KCNT2Q6UVM3 1135 aa14.24□□□□□ -0.13
PTPRF-214ENST00000496043 LRRC55Q6ZSA7 311 aa14.24□□□□□ -0.13
PTPRF-214ENST00000496043 CATSPER4Q7RTX7 472 aa14.24□□□□□ -0.13
PTPRF-214ENST00000496043 SRGAP1Q7Z6B7 1085 aa14.24□□□□□ -0.13
PTPRF-214ENST00000496043 RBM23Q86U06 439 aaKnown RBP14.24□□□□□ -0.13
PTPRF-214ENST00000496043 ZNF598Q86UK7 904 aaKnown RBP14.24□□□□□ -0.13
PTPRF-214ENST00000496043 CCDC83Q8IWF9 413 aa14.24□□□□□ -0.13
PTPRF-214ENST00000496043 PSPC1Q8WXF1 523 aaKnown RBP14.24□□□□□ -0.13
PTPRF-214ENST00000496043 TMEM143Q96AN5 459 aa14.24□□□□□ -0.13
PTPRF-214ENST00000496043 HSD17B14Q9BPX1 270 aa14.24□□□□□ -0.13
PTPRF-214ENST00000496043 EIF2AK1Q9BQI3 630 aaKnown RBP14.24□□□□□ -0.13
PTPRF-214ENST00000496043 TRAIPQ9BWF2 469 aa14.24□□□□□ -0.13
PTPRF-214ENST00000496043 TLE6Q9H808 572 aa14.24□□□□□ -0.13
PTPRF-214ENST00000496043 TTC12Q9H892 705 aaPredicted RBP14.24□□□□□ -0.13
PTPRF-214ENST00000496043 TLR9Q9NR96 1032 aa14.24□□□□□ -0.13
PTPRF-214ENST00000496043 LZTS1Q9Y250 596 aa14.24□□□□□ -0.13
PTPRF-214ENST00000496043 COL4A3BPQ9Y5P4 624 aa14.24□□□□□ -0.13
PTPRF-214ENST00000496043 MYO7AQ13402 2215 aa14.24□□□□□ -0.13
PTPRF-214ENST00000496043 NLRC5Q86WI3 1866 aa14.24□□□□□ -0.13
PTPRF-214ENST00000496043 NCOR1O75376 2440 aa14.23□□□□□ -0.13
PTPRF-214ENST00000496043 SPTBN5Q9NRC6 3674 aaKnown RBP14.23□□□□□ -0.13
PTPRF-214ENST00000496043 ZBTB39O15060 712 aa14.23□□□□□ -0.13
PTPRF-214ENST00000496043 NEMFO60524 1076 aa14.23□□□□□ -0.13
PTPRF-214ENST00000496043 LYPLA2O95372 231 aa14.23□□□□□ -0.13
PTPRF-214ENST00000496043 ATP2B1P20020 1258 aa14.23□□□□□ -0.13
PTPRF-214ENST00000496043 SSTR3P32745 418 aaPredicted RBP14.23□□□□□ -0.13
PTPRF-214ENST00000496043 PHKA2P46019 1235 aa14.23□□□□□ -0.13
PTPRF-214ENST00000496043 NRIP1P48552 1158 aa14.23□□□□□ -0.13
PTPRF-214ENST00000496043 ERVFC1P60507 584 aa14.23□□□□□ -0.13
PTPRF-214ENST00000496043 GUCY1B3Q02153 619 aa14.23□□□□□ -0.13
PTPRF-214ENST00000496043 DLX2Q07687 328 aaPredicted RBP14.23□□□□□ -0.13
PTPRF-214ENST00000496043 ADGRD2Q7Z7M1 963 aa14.23□□□□□ -0.13
PTPRF-214ENST00000496043 LRRC43Q8N309 656 aa14.23□□□□□ -0.13
PTPRF-214ENST00000496043 EFHBQ8N7U6 833 aa14.23□□□□□ -0.13
PTPRF-214ENST00000496043 RSPH1Q8WYR4 309 aa14.23□□□□□ -0.13
PTPRF-214ENST00000496043 MRPS27Q92552 414 aaKnown RBP14.23□□□□□ -0.13
PTPRF-214ENST00000496043 C8orf76Q96K31 380 aa14.23□□□□□ -0.13
PTPRF-214ENST00000496043 ZNF558Q96NG5 402 aa14.23□□□□□ -0.13
PTPRF-214ENST00000496043 MTMR9Q96QG7 549 aa14.23□□□□□ -0.13
PTPRF-214ENST00000496043 EPHX3Q9H6B9 360 aa14.23□□□□□ -0.13
PTPRF-214ENST00000496043 IFT122Q9HBG6 1241 aa14.23□□□□□ -0.13
PTPRF-214ENST00000496043 CD320Q9NPF0 282 aa14.23□□□□□ -0.13
PTPRF-214ENST00000496043 ANKEF1Q9NU02 776 aa14.23□□□□□ -0.13
PTPRF-214ENST00000496043 SPG21Q9NZD8 308 aa14.23□□□□□ -0.13
PTPRF-214ENST00000496043 HCSTQ9UBK5 93 aa14.23□□□□□ -0.13
PTPRF-214ENST00000496043 PRKAG3Q9UGI9 489 aa14.23□□□□□ -0.13
PTPRF-214ENST00000496043 PIN4Q9Y237 131 aaKnown RBP14.23□□□□□ -0.13
PTPRF-214ENST00000496043 BRWD1Q9NSI6 2320 aa14.23□□□□□ -0.13
PTPRF-214ENST00000496043 LINC01565O15544 149 aa14.22□□□□□ -0.13
PTPRF-214ENST00000496043 ZNF623O75123 536 aa14.22□□□□□ -0.13
PTPRF-214ENST00000496043 XRCC6P12956 609 aaKnown RBP eCLIP14.22□□□□□ -0.13
PTPRF-214ENST00000496043 PPM1AP35813 382 aa14.22□□□□□ -0.13
PTPRF-214ENST00000496043 NDUFV1P49821 464 aa14.22□□□□□ -0.13
PTPRF-214ENST00000496043 RAB27AP51159 221 aa14.22□□□□□ -0.13
PTPRF-214ENST00000496043 LAMTOR4Q0VGL1 99 aa14.22□□□□□ -0.13
PTPRF-214ENST00000496043 ST3GAL1Q11201 340 aa14.22□□□□□ -0.13
PTPRF-214ENST00000496043 CLLU1OSQ5K130 101 aa14.22□□□□□ -0.13
PTPRF-214ENST00000496043 FERMT3Q86UX7 667 aa14.22□□□□□ -0.13
PTPRF-214ENST00000496043 HELQQ8TDG4 1101 aa14.22□□□□□ -0.13
PTPRF-214ENST00000496043 PGBD4Q96DM1 585 aa14.22□□□□□ -0.13
PTPRF-214ENST00000496043 MRPL9Q9BYD2 267 aaKnown RBP14.22□□□□□ -0.13
PTPRF-214ENST00000496043 NGRNQ9NPE2 291 aaKnown RBP14.22□□□□□ -0.13
PTPRF-214ENST00000496043 SH2B1Q9NRF2 756 aaPredicted RBP14.22□□□□□ -0.13
PTPRF-214ENST00000496043 CD207Q9UJ71 328 aa14.22□□□□□ -0.13
PTPRF-214ENST00000496043 WDR81Q562E7 1941 aa14.21□□□□□ -0.13
PTPRF-214ENST00000496043 FSD2A1L4K1 749 aa14.21□□□□□ -0.13
PTPRF-214ENST00000496043 PI4K2BG5E9Z4 385 aa14.21□□□□□ -0.13
PTPRF-214ENST00000496043 FSCN2O14926 492 aa14.21□□□□□ -0.13
PTPRF-214ENST00000496043 MBTPS2O43462 519 aa14.21□□□□□ -0.13
PTPRF-214ENST00000496043 ATF7P17544 494 aaPredicted RBP14.21□□□□□ -0.13
PTPRF-214ENST00000496043 MCM7P33993 719 aa14.21□□□□□ -0.13
PTPRF-214ENST00000496043 ALDH7A1P49419 539 aaKnown RBP14.21□□□□□ -0.13
PTPRF-214ENST00000496043 HMGN5P82970 282 aaKnown RBP14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms