RNA–Protein interactions for RNA: ENST00000494993.1

HDDC3-203, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,220 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-203ENST00000494993 KRT17Q04695 432 aa24.83■■□□□ 1.57
HDDC3-203ENST00000494993 STK3Q13188 491 aa24.83■■□□□ 1.57
HDDC3-203ENST00000494993 NONOQ15233 471 aaKnown RBP eCLIP24.83■■□□□ 1.57
HDDC3-203ENST00000494993 HELQQ8TDG4 1101 aa24.83■■□□□ 1.57
HDDC3-203ENST00000494993 GCOM2Q9BZD3 368 aaPredicted RBP24.83■■□□□ 1.57
HDDC3-203ENST00000494993 KCNH6Q9H252 994 aa24.83■■□□□ 1.57
HDDC3-203ENST00000494993 SPG21Q9NZD8 308 aa24.83■■□□□ 1.57
HDDC3-203ENST00000494993 ARID2Q68CP9 1835 aa24.82■■□□□ 1.56
HDDC3-203ENST00000494993 HIDE1A8MVS5 230 aa24.82■■□□□ 1.56
HDDC3-203ENST00000494993 CSDE1O75534 798 aaKnown RBP24.82■■□□□ 1.56
HDDC3-203ENST00000494993 DNM2P50570 870 aa24.82■■□□□ 1.56
HDDC3-203ENST00000494993 MFSD14AQ96MC6 490 aa24.82■■□□□ 1.56
HDDC3-203ENST00000494993 SH2D3AQ9BRG2 576 aa24.82■■□□□ 1.56
HDDC3-203ENST00000494993 CHST12Q9NRB3 414 aa24.82■■□□□ 1.56
HDDC3-203ENST00000494993 WDFY4Q6ZS81 3184 aa24.82■■□□□ 1.56
HDDC3-203ENST00000494993 A0A087WZ62 844 aa24.81■■□□□ 1.56
HDDC3-203ENST00000494993 TECP42680 631 aa24.81■■□□□ 1.56
HDDC3-203ENST00000494993 INF2Q27J81 1249 aa24.81■■□□□ 1.56
HDDC3-203ENST00000494993 ANKRD54Q6NXT1 300 aa24.81■■□□□ 1.56
HDDC3-203ENST00000494993 KRT25Q7Z3Z0 450 aa24.81■■□□□ 1.56
HDDC3-203ENST00000494993 TMC7Q7Z402 723 aa24.81■■□□□ 1.56
HDDC3-203ENST00000494993 SLC39A11Q8N1S5 342 aa24.81■■□□□ 1.56
HDDC3-203ENST00000494993 RPGRIP1Q96KN7 1286 aa24.81■■□□□ 1.56
HDDC3-203ENST00000494993 FDXACB1Q9BRP7 624 aaPredicted RBP24.81■■□□□ 1.56
HDDC3-203ENST00000494993 MRPL9Q9BYD2 267 aaKnown RBP24.81■■□□□ 1.56
HDDC3-203ENST00000494993 DDX25Q9UHL0 483 aaKnown RBP24.81■■□□□ 1.56
HDDC3-203ENST00000494993 DDX11L8A8MPP1 907 aa24.8■■□□□ 1.56
HDDC3-203ENST00000494993 SLC37A4O43826 429 aa24.8■■□□□ 1.56
HDDC3-203ENST00000494993 SFPQP23246 707 aaKnown RBP eCLIP24.8■■□□□ 1.56
HDDC3-203ENST00000494993 LLGL2Q6P1M3 1020 aa24.8■■□□□ 1.56
HDDC3-203ENST00000494993 ZNF410Q86VK4 478 aa24.8■■□□□ 1.56
HDDC3-203ENST00000494993 S1PR5Q9H228 398 aa24.8■■□□□ 1.56
HDDC3-203ENST00000494993 SUCLA2Q9P2R7 463 aaPredicted RBP24.8■■□□□ 1.56
HDDC3-203ENST00000494993 MAFO75444 373 aaPredicted RBP24.79■■□□□ 1.56
HDDC3-203ENST00000494993 PHKA2P46019 1235 aa24.79■■□□□ 1.56
HDDC3-203ENST00000494993 PSMC5P62195 406 aa24.79■■□□□ 1.56
HDDC3-203ENST00000494993 SYCE2Q6PIF2 218 aa24.79■■□□□ 1.56
HDDC3-203ENST00000494993 ANO5Q75V66 913 aa24.79■■□□□ 1.56
HDDC3-203ENST00000494993 RHPN2Q8IUC4 686 aa24.79■■□□□ 1.56
HDDC3-203ENST00000494993 FBXL18Q96ME1 805 aa24.79■■□□□ 1.56
HDDC3-203ENST00000494993 TRAIPQ9BWF2 469 aa24.79■■□□□ 1.56
HDDC3-203ENST00000494993 INO80BQ9C086 356 aaPredicted RBP24.79■■□□□ 1.56
HDDC3-203ENST00000494993 PDRG1Q9NUG6 133 aa24.79■■□□□ 1.56
HDDC3-203ENST00000494993 KCNJ14Q9UNX9 436 aa24.79■■□□□ 1.56
HDDC3-203ENST00000494993 MYO10Q9HD67 2058 aa24.79■■□□□ 1.56
HDDC3-203ENST00000494993 KMT2EQ8IZD2 1858 aa24.79■■□□□ 1.56
HDDC3-203ENST00000494993 BCAR1P56945 870 aa24.78■■□□□ 1.56
HDDC3-203ENST00000494993 ZXDAP98168 799 aa24.78■■□□□ 1.56
HDDC3-203ENST00000494993 SMC1AQ14683 1233 aaKnown RBP24.78■■□□□ 1.56
HDDC3-203ENST00000494993 LETM2Q2VYF4 491 aa24.78■■□□□ 1.56
HDDC3-203ENST00000494993 TWF2Q6IBS0 349 aaKnown RBP24.78■■□□□ 1.56
HDDC3-203ENST00000494993 TRIM67Q6ZTA4 783 aa24.78■■□□□ 1.56
HDDC3-203ENST00000494993 BMP8AQ7Z5Y6 402 aa24.78■■□□□ 1.56
HDDC3-203ENST00000494993 RSPH1Q8WYR4 309 aa24.78■■□□□ 1.56
HDDC3-203ENST00000494993 JPH2Q9BR39 696 aaPredicted RBP24.78■■□□□ 1.56
HDDC3-203ENST00000494993 PHF20Q9BVI0 1012 aa24.78■■□□□ 1.56
HDDC3-203ENST00000494993 TMEM221A6NGB7 291 aa24.77■■□□□ 1.56
HDDC3-203ENST00000494993 M0R296 226 aa24.77■■□□□ 1.56
HDDC3-203ENST00000494993 EML1O00423 815 aa24.77■■□□□ 1.56
HDDC3-203ENST00000494993 HOXB8P17481 243 aaPredicted RBP24.77■■□□□ 1.56
HDDC3-203ENST00000494993 PPP2R5CQ13362 524 aa24.77■■□□□ 1.56
HDDC3-203ENST00000494993 PLA2G4FQ68DD2 849 aa24.77■■□□□ 1.56
HDDC3-203ENST00000494993 APOL5Q9BWW9 433 aa24.77■■□□□ 1.56
HDDC3-203ENST00000494993 VAV3Q9UKW4 847 aa24.77■■□□□ 1.56
HDDC3-203ENST00000494993 PIN4Q9Y237 131 aaKnown RBP24.77■■□□□ 1.56
HDDC3-203ENST00000494993 ZDBF2Q9HCK1 2354 aa24.76■■□□□ 1.55
HDDC3-203ENST00000494993 CCDC194A0A1B0GVG4 234 aa24.76■■□□□ 1.55
HDDC3-203ENST00000494993 C2orf71A6NGG8 1288 aa24.76■■□□□ 1.55
HDDC3-203ENST00000494993 NT5C1B-RDH14C9J2C7 533 aa24.76■■□□□ 1.55
HDDC3-203ENST00000494993 CDKL5O76039 1030 aa24.76■■□□□ 1.55
HDDC3-203ENST00000494993 SKIP12755 728 aa24.76■■□□□ 1.55
HDDC3-203ENST00000494993 ALDH7A1P49419 539 aaKnown RBP24.76■■□□□ 1.55
HDDC3-203ENST00000494993 NHLH1Q02575 133 aa24.76■■□□□ 1.55
HDDC3-203ENST00000494993 SCRN1Q12765 414 aa24.76■■□□□ 1.55
HDDC3-203ENST00000494993 ALYREFQ86V81 257 aaKnown RBP24.76■■□□□ 1.55
HDDC3-203ENST00000494993 KSR1Q8IVT5 923 aa24.76■■□□□ 1.55
HDDC3-203ENST00000494993 MRPL43Q8N983 215 aaKnown RBP24.76■■□□□ 1.55
HDDC3-203ENST00000494993 CASP10Q92851 521 aa24.76■■□□□ 1.55
HDDC3-203ENST00000494993 TMEM169Q96HH4 297 aa24.76■■□□□ 1.55
HDDC3-203ENST00000494993 FAM20AQ96MK3 541 aa24.76■■□□□ 1.55
HDDC3-203ENST00000494993 NLRP4Q96MN2 994 aa24.76■■□□□ 1.55
HDDC3-203ENST00000494993 KCNMB3Q9NPA1 279 aa24.76■■□□□ 1.55
HDDC3-203ENST00000494993 CYP26B1Q9NR63 512 aa24.76■■□□□ 1.55
HDDC3-203ENST00000494993 QARSP47897 775 aaKnown RBP24.75■■□□□ 1.55
HDDC3-203ENST00000494993 PPP4R3AQ6IN85 833 aa24.75■■□□□ 1.55
HDDC3-203ENST00000494993 CATSPER4Q7RTX7 472 aa24.75■■□□□ 1.55
HDDC3-203ENST00000494993 NEK8Q86SG6 692 aa24.75■■□□□ 1.55
HDDC3-203ENST00000494993 LPPQ93052 612 aa24.75■■□□□ 1.55
HDDC3-203ENST00000494993 FAM105AQ9NUU6 356 aa24.75■■□□□ 1.55
HDDC3-203ENST00000494993 HCFC2Q9Y5Z7 792 aa24.75■■□□□ 1.55
HDDC3-203ENST00000494993 STK36Q9NRP7 1315 aa24.75■■□□□ 1.55
HDDC3-203ENST00000494993 DKC1O60832 514 aaKnown RBP eCLIP24.74■■□□□ 1.55
HDDC3-203ENST00000494993 ZC3H11AO75152 810 aaKnown RBP eCLIP24.74■■□□□ 1.55
HDDC3-203ENST00000494993 GCFC2P16383 781 aaKnown RBP24.74■■□□□ 1.55
HDDC3-203ENST00000494993 RAB27AP51159 221 aa24.74■■□□□ 1.55
HDDC3-203ENST00000494993 NPEPPSP55786 919 aa24.74■■□□□ 1.55
HDDC3-203ENST00000494993 LONRF3Q496Y0 759 aa24.74■■□□□ 1.55
HDDC3-203ENST00000494993 PBXIP1Q96AQ6 731 aa24.74■■□□□ 1.55
HDDC3-203ENST00000494993 SLKQ9H2G2 1235 aaPredicted RBP24.74■■□□□ 1.55
HDDC3-203ENST00000494993 CARNS1A5YM72 827 aa24.73■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms