RNA–Protein interactions for RNA: ENST00000493829.5

USP39-218, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 1,660 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-218ENST00000493829 ANO6Q4KMQ2 910 aa21.39■■□□□ 1.01
USP39-218ENST00000493829 ZC2HC1CQ53FD0 456 aaPredicted RBP21.39■■□□□ 1.01
USP39-218ENST00000493829 KLHL10Q6JEL2 608 aa21.39■■□□□ 1.01
USP39-218ENST00000493829 SESTD1Q86VW0 696 aa21.39■■□□□ 1.01
USP39-218ENST00000493829 KIAA0319LQ8IZA0 1049 aa21.39■■□□□ 1.01
USP39-218ENST00000493829 SCLT1Q96NL6 688 aa21.39■■□□□ 1.01
USP39-218ENST00000493829 ADGRA3Q8IWK6 1321 aa21.39■■□□□ 1.01
USP39-218ENST00000493829 ARVCFO00192 962 aa21.38■■□□□ 1.01
USP39-218ENST00000493829 CD44P16070 742 aaKnown RBP21.38■■□□□ 1.01
USP39-218ENST00000493829 LRSAM1Q6UWE0 723 aa21.38■■□□□ 1.01
USP39-218ENST00000493829 NELFCDQ8IXH7 590 aa21.38■■□□□ 1.01
USP39-218ENST00000493829 WNT8BQ93098 351 aa21.38■■□□□ 1.01
USP39-218ENST00000493829 FIZ1Q96SL8 496 aa21.38■■□□□ 1.01
USP39-218ENST00000493829 TRPV6Q9H1D0 765 aa21.38■■□□□ 1.01
USP39-218ENST00000493829 OLFML3Q9NRN5 406 aa21.38■■□□□ 1.01
USP39-218ENST00000493829 ANO10Q9NW15 660 aa21.38■■□□□ 1.01
USP39-218ENST00000493829 SEL1LQ9UBV2 794 aa21.38■■□□□ 1.01
USP39-218ENST00000493829 GINS2Q9Y248 185 aa21.38■■□□□ 1.01
USP39-218ENST00000493829 ZNF445P59923 1031 aa21.37■■□□□ 1.01
USP39-218ENST00000493829 PSMD2Q13200 908 aa21.37■■□□□ 1.01
USP39-218ENST00000493829 RNF149Q8NC42 400 aa21.37■■□□□ 1.01
USP39-218ENST00000493829 DEPTORQ8TB45 409 aa21.37■■□□□ 1.01
USP39-218ENST00000493829 CTAGE1Q96RT6 745 aa21.37■■□□□ 1.01
USP39-218ENST00000493829 TSPY26PQ9H489 355 aa21.37■■□□□ 1.01
USP39-218ENST00000493829 CTNND2Q9UQB3 1225 aa21.37■■□□□ 1.01
USP39-218ENST00000493829 SMIM35A0A1B0GVV1 85 aa21.37■■□□□ 1.01
USP39-218ENST00000493829 B4GALT4O60513 344 aa21.37■■□□□ 1.01
USP39-218ENST00000493829 PRPF6O94906 941 aaKnown RBP21.37■■□□□ 1.01
USP39-218ENST00000493829 PRCPP42785 496 aa21.37■■□□□ 1.01
USP39-218ENST00000493829 NAMPTP43490 491 aa21.37■■□□□ 1.01
USP39-218ENST00000493829 RTP1P59025 263 aa21.37■■□□□ 1.01
USP39-218ENST00000493829 MXD4Q14582 209 aaPredicted RBP21.37■■□□□ 1.01
USP39-218ENST00000493829 PPP2R5AQ15172 486 aa21.37■■□□□ 1.01
USP39-218ENST00000493829 PAWRQ96IZ0 340 aaKnown RBP21.37■■□□□ 1.01
USP39-218ENST00000493829 PQBP1O60828 265 aaKnown RBP21.36■■□□□ 1.01
USP39-218ENST00000493829 SMTNP53814 917 aa21.36■■□□□ 1.01
USP39-218ENST00000493829 NCKAP1LP55160 1127 aa21.36■■□□□ 1.01
USP39-218ENST00000493829 PTPN11Q06124 597 aaPredicted RBP21.36■■□□□ 1.01
USP39-218ENST00000493829 KIZQ2M2Z5 673 aa21.36■■□□□ 1.01
USP39-218ENST00000493829 HAUS6Q7Z4H7 955 aa21.36■■□□□ 1.01
USP39-218ENST00000493829 SERINC5Q86VE9 423 aa21.36■■□□□ 1.01
USP39-218ENST00000493829 SLC43A3Q8NBI5 491 aa21.36■■□□□ 1.01
USP39-218ENST00000493829 NLRP7Q8WX94 980 aa21.36■■□□□ 1.01
USP39-218ENST00000493829 C17orf75Q9HAS0 396 aa21.36■■□□□ 1.01
USP39-218ENST00000493829 DENND3A2RUS2 1198 aa21.35■■□□□ 1.01
USP39-218ENST00000493829 CTSHP09668 335 aa21.35■■□□□ 1.01
USP39-218ENST00000493829 EN2P19622 333 aaPredicted RBP21.35■■□□□ 1.01
USP39-218ENST00000493829 NLRP11P59045 1033 aaKnown RBP21.35■■□□□ 1.01
USP39-218ENST00000493829 KCNA1Q09470 495 aa21.35■■□□□ 1.01
USP39-218ENST00000493829 TFDP1Q14186 410 aa21.35■■□□□ 1.01
USP39-218ENST00000493829 COL13A1Q5TAT6 717 aaPredicted RBP21.35■■□□□ 1.01
USP39-218ENST00000493829 ANKLE1Q8NAG6 615 aa21.35■■□□□ 1.01
USP39-218ENST00000493829 SCFD1Q8WVM8 642 aa21.35■■□□□ 1.01
USP39-218ENST00000493829 SPIRE2Q8WWL2 714 aa21.35■■□□□ 1.01
USP39-218ENST00000493829 ANP32EQ9BTT0 268 aa21.35■■□□□ 1.01
USP39-218ENST00000493829 IKZF4Q9H2S9 585 aa21.35■■□□□ 1.01
USP39-218ENST00000493829 C11orf49Q9H6J7 331 aa21.35■■□□□ 1.01
USP39-218ENST00000493829 A0A087WZ62 844 aa21.34■■□□□ 1.01
USP39-218ENST00000493829 PPP1R3GB7ZBB8 358 aa21.34■■□□□ 1.01
USP39-218ENST00000493829 GPC3P51654 580 aa21.34■■□□□ 1.01
USP39-218ENST00000493829 TAF2Q6P1X5 1199 aa21.34■■□□□ 1.01
USP39-218ENST00000493829 ZNF720Q7Z2F6 126 aa21.34■■□□□ 1.01
USP39-218ENST00000493829 MYOCDQ8IZQ8 938 aa21.34■■□□□ 1.01
USP39-218ENST00000493829 MLKLQ8NB16 471 aa21.34■■□□□ 1.01
USP39-218ENST00000493829 TMEM161BQ8NDZ6 487 aa21.34■■□□□ 1.01
USP39-218ENST00000493829 FDXACB1Q9BRP7 624 aaPredicted RBP21.34■■□□□ 1.01
USP39-218ENST00000493829 SIP14410 1827 aa21.34■■□□□ 1.01
USP39-218ENST00000493829 CSDE1O75534 798 aaKnown RBP21.34■■□□□ 1.01
USP39-218ENST00000493829 MAPTP10636 758 aaKnown RBP21.34■■□□□ 1.01
USP39-218ENST00000493829 COL6A1P12109 1028 aa21.34■■□□□ 1.01
USP39-218ENST00000493829 THPOP40225 353 aa21.34■■□□□ 1.01
USP39-218ENST00000493829 STX17P56962 302 aa21.34■■□□□ 1.01
USP39-218ENST00000493829 STIM1Q13586 685 aa21.34■■□□□ 1.01
USP39-218ENST00000493829 SLC39A5Q6ZMH5 540 aa21.34■■□□□ 1.01
USP39-218ENST00000493829 EPM2AIP1Q7L775 607 aaPredicted RBP21.34■■□□□ 1.01
USP39-218ENST00000493829 ADSSL1Q8N142 457 aa21.34■■□□□ 1.01
USP39-218ENST00000493829 DHX38Q92620 1227 aaKnown RBP21.34■■□□□ 1.01
USP39-218ENST00000493829 TRIM60Q495X7 471 aa21.33■■□□□ 1
USP39-218ENST00000493829 STXBP4Q6ZWJ1 553 aa21.33■■□□□ 1
USP39-218ENST00000493829 ZBTB8OSQ8IWT0 167 aa21.33■■□□□ 1
USP39-218ENST00000493829 FAM126BQ8IXS8 530 aa21.33■■□□□ 1
USP39-218ENST00000493829 NELFBQ8WX92 580 aa21.33■■□□□ 1
USP39-218ENST00000493829 OSMRQ99650 979 aa21.33■■□□□ 1
USP39-218ENST00000493829 ARHGAP28Q9P2N2 729 aa21.33■■□□□ 1
USP39-218ENST00000493829 DACH1Q9UI36 760 aa21.33■■□□□ 1
USP39-218ENST00000493829 USP20Q9Y2K6 914 aa21.33■■□□□ 1
USP39-218ENST00000493829 KIAA0100Q14667 2235 aaKnown RBP21.33■■□□□ 1
USP39-218ENST00000493829 TRIM49BA6NDI0 452 aa21.32■■□□□ 1
USP39-218ENST00000493829 ASAP2O43150 1006 aa21.32■■□□□ 1
USP39-218ENST00000493829 PPP1R37O75864 691 aa21.32■■□□□ 1
USP39-218ENST00000493829 PHKA2P46019 1235 aa21.32■■□□□ 1
USP39-218ENST00000493829 CDK7P50613 346 aa21.32■■□□□ 1
USP39-218ENST00000493829 PTK7Q13308 1070 aa21.32■■□□□ 1
USP39-218ENST00000493829 CDHR5Q9HBB8 845 aa21.32■■□□□ 1
USP39-218ENST00000493829 ATP11BQ9Y2G3 1177 aa21.32■■□□□ 1
USP39-218ENST00000493829 ZMYM2Q9UBW7 1377 aa21.32■■□□□ 1
USP39-218ENST00000493829 INO80B-WBP1J3KQ70 363 aa21.31■■□□□ 1
USP39-218ENST00000493829 PSMA7O14818 248 aa21.31■■□□□ 1
USP39-218ENST00000493829 EIF3DO15371 548 aaKnown RBP eCLIP21.31■■□□□ 1
USP39-218ENST00000493829 HOXD13P35453 343 aa21.31■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms