RNA–Protein interactions for RNA: ENST00000493608.1

COL6A3-214, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 742 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-214ENST00000493608 DGKIO75912 1065 aa11.97□□□□□ -0.49
COL6A3-214ENST00000493608 CSPG5O95196 566 aa11.97□□□□□ -0.49
COL6A3-214ENST00000493608 GCFC2P16383 781 aaKnown RBP11.97□□□□□ -0.49
COL6A3-214ENST00000493608 ATP2B1P20020 1258 aa11.97□□□□□ -0.49
COL6A3-214ENST00000493608 FGFR4P22455 802 aa11.97□□□□□ -0.49
COL6A3-214ENST00000493608 TMOD1P28289 359 aa11.97□□□□□ -0.49
COL6A3-214ENST00000493608 CTNNB1P35222 781 aa11.97□□□□□ -0.49
COL6A3-214ENST00000493608 COPS2P61201 443 aa11.97□□□□□ -0.49
COL6A3-214ENST00000493608 PPP2R5CQ13362 524 aa11.97□□□□□ -0.49
COL6A3-214ENST00000493608 TRIM29Q14134 588 aa11.97□□□□□ -0.49
COL6A3-214ENST00000493608 BTG3Q14201 252 aaPredicted RBP11.97□□□□□ -0.49
COL6A3-214ENST00000493608 TARBP2Q15633 366 aaKnown RBP11.97□□□□□ -0.49
COL6A3-214ENST00000493608 XKR3Q5GH77 459 aa11.97□□□□□ -0.49
COL6A3-214ENST00000493608 PLA2G4FQ68DD2 849 aa11.97□□□□□ -0.49
COL6A3-214ENST00000493608 NCAPH2Q6IBW4 605 aa11.97□□□□□ -0.49
COL6A3-214ENST00000493608 FAM228AQ86W67 206 aa11.97□□□□□ -0.49
COL6A3-214ENST00000493608 DIS3L2Q8IYB7 885 aaKnown RBP11.97□□□□□ -0.49
COL6A3-214ENST00000493608 ZNF689Q96CS4 500 aaPredicted RBP11.97□□□□□ -0.49
COL6A3-214ENST00000493608 FAM20AQ96MK3 541 aa11.97□□□□□ -0.49
COL6A3-214ENST00000493608 ASB2Q96Q27 587 aa11.97□□□□□ -0.49
COL6A3-214ENST00000493608 MAP7D2Q96T17 732 aa11.97□□□□□ -0.49
COL6A3-214ENST00000493608 PRR14Q9BWN1 585 aa11.97□□□□□ -0.49
COL6A3-214ENST00000493608 ADAMTS10Q9H324 1103 aa11.97□□□□□ -0.49
COL6A3-214ENST00000493608 RGL1Q9NZL6 768 aa11.97□□□□□ -0.49
COL6A3-214ENST00000493608 LRFN2Q9ULH4 789 aa11.97□□□□□ -0.49
COL6A3-214ENST00000493608 RALGAPA2Q2PPJ7 1873 aa11.97□□□□□ -0.49
COL6A3-214ENST00000493608 FNDC1Q4ZHG4 1894 aaPredicted RBP11.96□□□□□ -0.49
COL6A3-214ENST00000493608 ADGRA3Q8IWK6 1321 aa11.96□□□□□ -0.49
COL6A3-214ENST00000493608 KIAA1671Q9BY89 1806 aa11.96□□□□□ -0.49
COL6A3-214ENST00000493608 ZBTB39O15060 712 aa11.96□□□□□ -0.49
COL6A3-214ENST00000493608 GPR182O15218 404 aa11.96□□□□□ -0.49
COL6A3-214ENST00000493608 GPC3P51654 580 aa11.96□□□□□ -0.49
COL6A3-214ENST00000493608 NPEPPSP55786 919 aa11.96□□□□□ -0.49
COL6A3-214ENST00000493608 PSMC5P62195 406 aa11.96□□□□□ -0.49
COL6A3-214ENST00000493608 MRPS5P82675 430 aaKnown RBP11.96□□□□□ -0.49
COL6A3-214ENST00000493608 FAM102BQ5T8I3 360 aa11.96□□□□□ -0.49
COL6A3-214ENST00000493608 ANO5Q75V66 913 aa11.96□□□□□ -0.49
COL6A3-214ENST00000493608 NPAS4Q8IUM7 802 aa11.96□□□□□ -0.49
COL6A3-214ENST00000493608 CRIPAKQ8N1N5 446 aa11.96□□□□□ -0.49
COL6A3-214ENST00000493608 ATXN2LQ8WWM7 1075 aaKnown RBP11.96□□□□□ -0.49
COL6A3-214ENST00000493608 DYDC2Q96IM9 177 aa11.96□□□□□ -0.49
COL6A3-214ENST00000493608 SCLT1Q96NL6 688 aa11.96□□□□□ -0.49
COL6A3-214ENST00000493608 SAMD11Q96NU1 681 aa11.96□□□□□ -0.49
COL6A3-214ENST00000493608 CEP89Q96ST8 783 aa11.96□□□□□ -0.49
COL6A3-214ENST00000493608 NIFKQ9BYG3 293 aaKnown RBP11.96□□□□□ -0.49
COL6A3-214ENST00000493608 RC3H2Q9HBD1 1191 aaKnown RBP11.96□□□□□ -0.49
COL6A3-214ENST00000493608 LMCD1Q9NZU5 365 aa11.96□□□□□ -0.49
COL6A3-214ENST00000493608 WRAP73Q9P2S5 460 aaPredicted RBP11.96□□□□□ -0.49
COL6A3-214ENST00000493608 PCDHB7Q9Y5E2 793 aa11.96□□□□□ -0.49
COL6A3-214ENST00000493608 COL4A6Q14031 1691 aa11.95□□□□□ -0.5
COL6A3-214ENST00000493608 H3BNC9 293 aa11.95□□□□□ -0.5
COL6A3-214ENST00000493608 TBX3O15119 743 aa11.95□□□□□ -0.5
COL6A3-214ENST00000493608 BAG4O95429 457 aaKnown RBP11.95□□□□□ -0.5
COL6A3-214ENST00000493608 P4HBP07237 508 aaKnown RBP11.95□□□□□ -0.5
COL6A3-214ENST00000493608 LINC00271P0C7V0 271 aa11.95□□□□□ -0.5
COL6A3-214ENST00000493608 STAG3L1P0CL83 205 aa11.95□□□□□ -0.5
COL6A3-214ENST00000493608 BMPR1AP36894 532 aa11.95□□□□□ -0.5
COL6A3-214ENST00000493608 QARSP47897 775 aaKnown RBP11.95□□□□□ -0.5
COL6A3-214ENST00000493608 SARSP49591 514 aaKnown RBP11.95□□□□□ -0.5
COL6A3-214ENST00000493608 KCNQ1P51787 676 aa11.95□□□□□ -0.5
COL6A3-214ENST00000493608 CYP4A11Q02928 519 aa11.95□□□□□ -0.5
COL6A3-214ENST00000493608 CTTNQ14247 550 aaKnown RBP11.95□□□□□ -0.5
COL6A3-214ENST00000493608 METTL3Q86U44 580 aaKnown RBP11.95□□□□□ -0.5
COL6A3-214ENST00000493608 KSR1Q8IVT5 923 aa11.95□□□□□ -0.5
COL6A3-214ENST00000493608 NLRP7Q8WX94 980 aa11.95□□□□□ -0.5
COL6A3-214ENST00000493608 C8orf76Q96K31 380 aa11.95□□□□□ -0.5
COL6A3-214ENST00000493608 ZSCAN31Q96LW9 406 aaPredicted RBP11.95□□□□□ -0.5
COL6A3-214ENST00000493608 NAP1L4Q99733 375 aaKnown RBP11.95□□□□□ -0.5
COL6A3-214ENST00000493608 RGS18Q9NS28 235 aa11.95□□□□□ -0.5
COL6A3-214ENST00000493608 MRPL42Q9Y6G3 142 aaKnown RBP11.95□□□□□ -0.5
COL6A3-214ENST00000493608 ATG2AQ2TAZ0 1938 aa11.95□□□□□ -0.5
COL6A3-214ENST00000493608 A0A087WWV3 80 aa11.94□□□□□ -0.5
COL6A3-214ENST00000493608 A0A087WZ62 844 aa11.94□□□□□ -0.5
COL6A3-214ENST00000493608 IGKV6-21A0A0C4DH24 114 aa11.94□□□□□ -0.5
COL6A3-214ENST00000493608 TBKBP1A7MCY6 615 aa11.94□□□□□ -0.5
COL6A3-214ENST00000493608 C9IYK1 514 aa11.94□□□□□ -0.5
COL6A3-214ENST00000493608 GRM6O15303 877 aa11.94□□□□□ -0.5
COL6A3-214ENST00000493608 FGFR1P11362 822 aa11.94□□□□□ -0.5
COL6A3-214ENST00000493608 EIF4BP23588 611 aaKnown RBP11.94□□□□□ -0.5
COL6A3-214ENST00000493608 TXKP42681 527 aa11.94□□□□□ -0.5
COL6A3-214ENST00000493608 SPIRE1Q08AE8 756 aa11.94□□□□□ -0.5
COL6A3-214ENST00000493608 DSC3Q14574 896 aa11.94□□□□□ -0.5
COL6A3-214ENST00000493608 EPHA7Q15375 998 aa11.94□□□□□ -0.5
COL6A3-214ENST00000493608 CALCRLQ16602 461 aa11.94□□□□□ -0.5
COL6A3-214ENST00000493608 ODR4Q5SWX8 454 aa11.94□□□□□ -0.5
COL6A3-214ENST00000493608 SLC24A5Q71RS6 500 aa11.94□□□□□ -0.5
COL6A3-214ENST00000493608 RHPN2Q8IUC4 686 aa11.94□□□□□ -0.5
COL6A3-214ENST00000493608 TPH2Q8IWU9 490 aa11.94□□□□□ -0.5
COL6A3-214ENST00000493608 SLFN12Q8IYM2 578 aa11.94□□□□□ -0.5
COL6A3-214ENST00000493608 SYMPKQ92797 1274 aaKnown RBP11.94□□□□□ -0.5
COL6A3-214ENST00000493608 CLP1Q92989 425 aaKnown RBP11.94□□□□□ -0.5
COL6A3-214ENST00000493608 HLA-CQ95604 372 aa11.94□□□□□ -0.5
COL6A3-214ENST00000493608 MRPL38Q96DV4 380 aaKnown RBP11.94□□□□□ -0.5
COL6A3-214ENST00000493608 CEP170P1Q96L14 293 aa11.94□□□□□ -0.5
COL6A3-214ENST00000493608 FDXACB1Q9BRP7 624 aaPredicted RBP11.94□□□□□ -0.5
COL6A3-214ENST00000493608 LLPHQ9BRT6 129 aaKnown RBP11.94□□□□□ -0.5
COL6A3-214ENST00000493608 LXNQ9BS40 222 aa11.94□□□□□ -0.5
COL6A3-214ENST00000493608 TTC12Q9H892 705 aaPredicted RBP11.94□□□□□ -0.5
COL6A3-214ENST00000493608 ALG13Q9NP73 1137 aaKnown RBP11.94□□□□□ -0.5
COL6A3-214ENST00000493608 CYP26B1Q9NR63 512 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms