RNA–Protein interactions for RNA: ENST00000491233.1

COL6A3-211, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 3

Gene COL6A3, Length 652 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-211ENST00000491233 DACT1Q9NYF0 836 aa15.31■□□□□ 0.04
COL6A3-211ENST00000491233 SUCLA2Q9P2R7 463 aaPredicted RBP15.31■□□□□ 0.04
COL6A3-211ENST00000491233 ORC3Q9UBD5 711 aaPredicted RBP15.31■□□□□ 0.04
COL6A3-211ENST00000491233 A0A0U1RQF3 1178 aa15.3■□□□□ 0.04
COL6A3-211ENST00000491233 FAM205CA6NFA0 338 aa15.3■□□□□ 0.04
COL6A3-211ENST00000491233 CCNT1O60563 726 aaKnown RBP15.3■□□□□ 0.04
COL6A3-211ENST00000491233 MAFO75444 373 aaPredicted RBP15.3■□□□□ 0.04
COL6A3-211ENST00000491233 EYA4O95677 639 aa15.3■□□□□ 0.04
COL6A3-211ENST00000491233 SFPQP23246 707 aaKnown RBP eCLIP15.3■□□□□ 0.04
COL6A3-211ENST00000491233 QARSP47897 775 aaKnown RBP15.3■□□□□ 0.04
COL6A3-211ENST00000491233 DNM2P50570 870 aa15.3■□□□□ 0.04
COL6A3-211ENST00000491233 RBM10P98175 930 aaKnown RBP15.3■□□□□ 0.04
COL6A3-211ENST00000491233 PLCB3Q01970 1234 aa15.3■□□□□ 0.04
COL6A3-211ENST00000491233 COASYQ13057 564 aa15.3■□□□□ 0.04
COL6A3-211ENST00000491233 DUSP6Q16828 381 aa15.3■□□□□ 0.04
COL6A3-211ENST00000491233 PPP4R3AQ6IN85 833 aa15.3■□□□□ 0.04
COL6A3-211ENST00000491233 ZNF598Q86UK7 904 aaKnown RBP15.3■□□□□ 0.04
COL6A3-211ENST00000491233 ZNF410Q86VK4 478 aa15.3■□□□□ 0.04
COL6A3-211ENST00000491233 POTEDQ86YR6 584 aa15.3■□□□□ 0.04
COL6A3-211ENST00000491233 RHPN2Q8IUC4 686 aa15.3■□□□□ 0.04
COL6A3-211ENST00000491233 VN1R2Q8NFZ6 395 aa15.3■□□□□ 0.04
COL6A3-211ENST00000491233 HELQQ8TDG4 1101 aa15.3■□□□□ 0.04
COL6A3-211ENST00000491233 FAM20AQ96MK3 541 aa15.3■□□□□ 0.04
COL6A3-211ENST00000491233 NLRP4Q96MN2 994 aa15.3■□□□□ 0.04
COL6A3-211ENST00000491233 ENTPD7Q9NQZ7 604 aa15.3■□□□□ 0.04
COL6A3-211ENST00000491233 LZTS1Q9Y250 596 aa15.3■□□□□ 0.04
COL6A3-211ENST00000491233 PRR33A8MZF0 331 aa15.29■□□□□ 0.04
COL6A3-211ENST00000491233 DKC1O60832 514 aaKnown RBP eCLIP15.29■□□□□ 0.04
COL6A3-211ENST00000491233 LARGE1O95461 756 aa15.29■□□□□ 0.04
COL6A3-211ENST00000491233 PPM1AP35813 382 aa15.29■□□□□ 0.04
COL6A3-211ENST00000491233 NPEPPSP55786 919 aa15.29■□□□□ 0.04
COL6A3-211ENST00000491233 CDC42EP1Q00587 391 aa15.29■□□□□ 0.04
COL6A3-211ENST00000491233 ANKRD1Q15327 319 aa15.29■□□□□ 0.04
COL6A3-211ENST00000491233 EARS2Q5JPH6 523 aaKnown RBP15.29■□□□□ 0.04
COL6A3-211ENST00000491233 TWF2Q6IBS0 349 aaKnown RBP15.29■□□□□ 0.04
COL6A3-211ENST00000491233 PDE12Q6L8Q7 609 aaKnown RBP15.29■□□□□ 0.04
COL6A3-211ENST00000491233 KSR1Q8IVT5 923 aa15.29■□□□□ 0.04
COL6A3-211ENST00000491233 NECAB1Q8N987 351 aa15.29■□□□□ 0.04
COL6A3-211ENST00000491233 WASF1Q92558 559 aa15.29■□□□□ 0.04
COL6A3-211ENST00000491233 FAM122AQ96E09 287 aa15.29■□□□□ 0.04
COL6A3-211ENST00000491233 CDCA3Q99618 268 aaPredicted RBP15.29■□□□□ 0.04
COL6A3-211ENST00000491233 NAP1L4Q99733 375 aaKnown RBP15.29■□□□□ 0.04
COL6A3-211ENST00000491233 TCF25Q9BQ70 676 aa15.29■□□□□ 0.04
COL6A3-211ENST00000491233 JPH2Q9BR39 696 aaPredicted RBP15.29■□□□□ 0.04
COL6A3-211ENST00000491233 MRPL9Q9BYD2 267 aaKnown RBP15.29■□□□□ 0.04
COL6A3-211ENST00000491233 CYP26B1Q9NR63 512 aa15.29■□□□□ 0.04
COL6A3-211ENST00000491233 PPP4R2Q9NY27 417 aa15.29■□□□□ 0.04
COL6A3-211ENST00000491233 WRAP73Q9P2S5 460 aaPredicted RBP15.29■□□□□ 0.04
COL6A3-211ENST00000491233 PIN4Q9Y237 131 aaKnown RBP15.29■□□□□ 0.04
COL6A3-211ENST00000491233 USP15Q9Y4E8 981 aaPredicted RBP15.29■□□□□ 0.04
COL6A3-211ENST00000491233 FSD2A1L4K1 749 aa15.28■□□□□ 0.04
COL6A3-211ENST00000491233 TBX3O15119 743 aa15.28■□□□□ 0.04
COL6A3-211ENST00000491233 MARCH6O60337 910 aa15.28■□□□□ 0.04
COL6A3-211ENST00000491233 EOMESO95936 686 aa15.28■□□□□ 0.04
COL6A3-211ENST00000491233 KRT2P35908 639 aa15.28■□□□□ 0.04
COL6A3-211ENST00000491233 PHKA2P46019 1235 aa15.28■□□□□ 0.04
COL6A3-211ENST00000491233 POLGP54098 1239 aaPredicted RBP15.28■□□□□ 0.04
COL6A3-211ENST00000491233 NR5A1Q13285 461 aa15.28■□□□□ 0.04
COL6A3-211ENST00000491233 NCAPH2Q6IBW4 605 aa15.28■□□□□ 0.04
COL6A3-211ENST00000491233 CATSPER4Q7RTX7 472 aa15.28■□□□□ 0.04
COL6A3-211ENST00000491233 SLC39A11Q8N1S5 342 aa15.28■□□□□ 0.04
COL6A3-211ENST00000491233 SLC7A3Q8WY07 619 aa15.28■□□□□ 0.04
COL6A3-211ENST00000491233 HAS1Q92839 578 aa15.28■□□□□ 0.04
COL6A3-211ENST00000491233 GTF3C6Q969F1 213 aa15.28■□□□□ 0.04
COL6A3-211ENST00000491233 LXNQ9BS40 222 aa15.28■□□□□ 0.04
COL6A3-211ENST00000491233 INO80BQ9C086 356 aaPredicted RBP15.28■□□□□ 0.04
COL6A3-211ENST00000491233 CHST12Q9NRB3 414 aa15.28■□□□□ 0.04
COL6A3-211ENST00000491233 BMP2KQ9NSY1 1161 aaPredicted RBP15.28■□□□□ 0.04
COL6A3-211ENST00000491233 SPG21Q9NZD8 308 aa15.28■□□□□ 0.04
COL6A3-211ENST00000491233 PUF60Q9UHX1 559 aaKnown RBP15.28■□□□□ 0.04
COL6A3-211ENST00000491233 MUTYHQ9UIF7 546 aa15.28■□□□□ 0.04
COL6A3-211ENST00000491233 COL4A3BPQ9Y5P4 624 aa15.28■□□□□ 0.04
COL6A3-211ENST00000491233 P4HBP07237 508 aaKnown RBP15.27■□□□□ 0.04
COL6A3-211ENST00000491233 SRGAP2BP0DMP2 458 aa15.27■□□□□ 0.04
COL6A3-211ENST00000491233 FDPSP14324 419 aaKnown RBP15.27■□□□□ 0.04
COL6A3-211ENST00000491233 EPHA7Q15375 998 aa15.27■□□□□ 0.04
COL6A3-211ENST00000491233 ME3Q16798 604 aa15.27■□□□□ 0.04
COL6A3-211ENST00000491233 RNF135Q8IUD6 432 aa15.27■□□□□ 0.04
COL6A3-211ENST00000491233 ZNF579Q8NAF0 562 aaKnown RBP15.27■□□□□ 0.04
COL6A3-211ENST00000491233 LPPQ93052 612 aa15.27■□□□□ 0.04
COL6A3-211ENST00000491233 CEP170P1Q96L14 293 aa15.27■□□□□ 0.04
COL6A3-211ENST00000491233 BRMS1Q9HCU9 246 aa15.27■□□□□ 0.04
COL6A3-211ENST00000491233 HIDE1A8MVS5 230 aa15.26■□□□□ 0.03
COL6A3-211ENST00000491233 RFC5P40937 340 aa15.26■□□□□ 0.03
COL6A3-211ENST00000491233 FOSBP53539 338 aa15.26■□□□□ 0.03
COL6A3-211ENST00000491233 CYP4A11Q02928 519 aa15.26■□□□□ 0.03
COL6A3-211ENST00000491233 KRT17Q04695 432 aa15.26■□□□□ 0.03
COL6A3-211ENST00000491233 SPIRE1Q08AE8 756 aa15.26■□□□□ 0.03
COL6A3-211ENST00000491233 LONRF3Q496Y0 759 aa15.26■□□□□ 0.03
COL6A3-211ENST00000491233 TMC7Q7Z402 723 aa15.26■□□□□ 0.03
COL6A3-211ENST00000491233 C4orf19Q8IY42 314 aa15.26■□□□□ 0.03
COL6A3-211ENST00000491233 NSUN7Q8NE18 718 aaKnown RBP15.26■□□□□ 0.03
COL6A3-211ENST00000491233 TNFRSF25Q93038 417 aa15.26■□□□□ 0.03
COL6A3-211ENST00000491233 TMEM143Q96AN5 459 aa15.26■□□□□ 0.03
COL6A3-211ENST00000491233 DYDC2Q96IM9 177 aa15.26■□□□□ 0.03
COL6A3-211ENST00000491233 TRAIPQ9BWF2 469 aa15.26■□□□□ 0.03
COL6A3-211ENST00000491233 DHX33Q9H6R0 707 aaKnown RBP15.26■□□□□ 0.03
COL6A3-211ENST00000491233 IFT122Q9HBG6 1241 aa15.26■□□□□ 0.03
COL6A3-211ENST00000491233 NGRNQ9NPE2 291 aaKnown RBP15.26■□□□□ 0.03
COL6A3-211ENST00000491233 AGPAT5Q9NUQ2 364 aa15.26■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms