RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 MAN2A1Q16706 1144 aa3.02□□□□□ -1.93
HMGB1-208ENST00000490788 ZXDCQ2QGD7 858 aaPredicted RBP3.02□□□□□ -1.93
HMGB1-208ENST00000490788 KRT40Q6A162 431 aa3.02□□□□□ -1.93
HMGB1-208ENST00000490788 KIAA1841Q6NSI8 718 aa3.02□□□□□ -1.93
HMGB1-208ENST00000490788 HDGFL2Q7Z4V5 671 aaPredicted RBP3.02□□□□□ -1.93
HMGB1-208ENST00000490788 TAX1BP1Q86VP1 789 aa3.02□□□□□ -1.93
HMGB1-208ENST00000490788 SMC1BQ8NDV3 1235 aa3.02□□□□□ -1.93
HMGB1-208ENST00000490788 OR5AN1Q8NGI8 311 aa3.02□□□□□ -1.93
HMGB1-208ENST00000490788 NEIL1Q96FI4 390 aaPredicted RBP3.02□□□□□ -1.93
HMGB1-208ENST00000490788 HIST1H2AHQ96KK5 128 aa3.02□□□□□ -1.93
HMGB1-208ENST00000490788 HIST1H2AJQ99878 128 aa3.02□□□□□ -1.93
HMGB1-208ENST00000490788 MTFR1LQ9H019 292 aa3.02□□□□□ -1.93
HMGB1-208ENST00000490788 KIAA1683Q9H0B3 1180 aa3.02□□□□□ -1.93
HMGB1-208ENST00000490788 POFUT1Q9H488 388 aa3.02□□□□□ -1.93
HMGB1-208ENST00000490788 IFT22Q9H7X7 185 aa3.02□□□□□ -1.93
HMGB1-208ENST00000490788 PPP4R1LQ9P1A2 415 aa3.02□□□□□ -1.93
HMGB1-208ENST00000490788 MAGEL2Q9UJ55 1249 aa3.02□□□□□ -1.93
HMGB1-208ENST00000490788 DENND2AQ9ULE3 1009 aa3.02□□□□□ -1.93
HMGB1-208ENST00000490788 OAZ3Q9UMX2 235 aa3.02□□□□□ -1.93
HMGB1-208ENST00000490788 PTPN22Q9Y2R2 807 aa3.02□□□□□ -1.93
HMGB1-208ENST00000490788 DCAF1Q9Y4B6 1507 aa3.02□□□□□ -1.93
HMGB1-208ENST00000490788 MAGI1Q96QZ7 1491 aaPredicted RBP3.02□□□□□ -1.93
HMGB1-208ENST00000490788 ADAMTS20P59510 1910 aa3.01□□□□□ -1.93
HMGB1-208ENST00000490788 GSG1L2A8MUP6 293 aa3.01□□□□□ -1.93
HMGB1-208ENST00000490788 ZEB2O60315 1214 aa3.01□□□□□ -1.93
HMGB1-208ENST00000490788 CNOT4O95628 575 aaKnown RBP3.01□□□□□ -1.93
HMGB1-208ENST00000490788 RPS19P39019 145 aaKnown RBP3.01□□□□□ -1.93
HMGB1-208ENST00000490788 MAGEA10P43363 369 aaPredicted RBP3.01□□□□□ -1.93
HMGB1-208ENST00000490788 ADAM15Q13444 863 aa3.01□□□□□ -1.93
HMGB1-208ENST00000490788 DHCR24Q15392 516 aa3.01□□□□□ -1.93
HMGB1-208ENST00000490788 SEPT7Q16181 437 aaKnown RBP3.01□□□□□ -1.93
HMGB1-208ENST00000490788 RNF151Q2KHN1 245 aa3.01□□□□□ -1.93
HMGB1-208ENST00000490788 GPR158Q5T848 1215 aa3.01□□□□□ -1.93
HMGB1-208ENST00000490788 RNF187Q5TA31 235 aaPredicted RBP3.01□□□□□ -1.93
HMGB1-208ENST00000490788 TRIM68Q6AZZ1 485 aa3.01□□□□□ -1.93
HMGB1-208ENST00000490788 ESRP1Q6NXG1 681 aaKnown RBP3.01□□□□□ -1.93
HMGB1-208ENST00000490788 FRMD7Q6ZUT3 714 aa3.01□□□□□ -1.93
HMGB1-208ENST00000490788 BMP8AQ7Z5Y6 402 aa3.01□□□□□ -1.93
HMGB1-208ENST00000490788 TTC9BQ8N6N2 239 aa3.01□□□□□ -1.93
HMGB1-208ENST00000490788 UBR7Q8N806 425 aa3.01□□□□□ -1.93
HMGB1-208ENST00000490788 ZNF610Q8N9Z0 462 aa3.01□□□□□ -1.93
HMGB1-208ENST00000490788 OR14K1Q8NGZ2 314 aa3.01□□□□□ -1.93
HMGB1-208ENST00000490788 SLC7A6OSQ96CW6 309 aaPredicted RBP3.01□□□□□ -1.93
HMGB1-208ENST00000490788 WDR92Q96MX6 357 aa3.01□□□□□ -1.93
HMGB1-208ENST00000490788 C8orf49Q96NF6 230 aa3.01□□□□□ -1.93
HMGB1-208ENST00000490788 GNRHR2Q96P88 292 aa3.01□□□□□ -1.93
HMGB1-208ENST00000490788 OR14A2Q96R54 314 aa3.01□□□□□ -1.93
HMGB1-208ENST00000490788 CDK5RAP1Q96SZ6 601 aaKnown RBP3.01□□□□□ -1.93
HMGB1-208ENST00000490788 NOL10Q9BSC4 688 aaKnown RBP3.01□□□□□ -1.93
HMGB1-208ENST00000490788 MYL10Q9BUA6 226 aa3.01□□□□□ -1.93
HMGB1-208ENST00000490788 MTG2Q9H4K7 406 aa3.01□□□□□ -1.93
HMGB1-208ENST00000490788 MSL2Q9HCI7 577 aa3.01□□□□□ -1.93
HMGB1-208ENST00000490788 EMC7Q9NPA0 242 aa3.01□□□□□ -1.93
HMGB1-208ENST00000490788 SPTLC3Q9NUV7 552 aa3.01□□□□□ -1.93
HMGB1-208ENST00000490788 POLR3BQ9NW08 1133 aaPredicted RBP3.01□□□□□ -1.93
HMGB1-208ENST00000490788 ST6GALNAC2Q9UJ37 374 aa3.01□□□□□ -1.93
HMGB1-208ENST00000490788 APOBEC2Q9Y235 224 aaKnown RBP3.01□□□□□ -1.93
HMGB1-208ENST00000490788 PRKAB1Q9Y478 270 aa3.01□□□□□ -1.93
HMGB1-208ENST00000490788 RBM8AQ9Y5S9 174 aaKnown RBP3.01□□□□□ -1.93
HMGB1-208ENST00000490788 TOPBP1Q92547 1522 aa3.01□□□□□ -1.93
HMGB1-208ENST00000490788 PPRC1Q5VV67 1664 aaKnown RBP3.01□□□□□ -1.93
HMGB1-208ENST00000490788 RIMS1Q86UR5 1692 aaKnown RBP3.01□□□□□ -1.93
HMGB1-208ENST00000490788 A0A087X0B3 334 aa3□□□□□ -1.93
HMGB1-208ENST00000490788 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP3□□□□□ -1.93
HMGB1-208ENST00000490788 A0A1W2PRX2 142 aa3□□□□□ -1.93
HMGB1-208ENST00000490788 KDM1AO60341 852 aa3□□□□□ -1.93
HMGB1-208ENST00000490788 NRP2O60462 931 aa3□□□□□ -1.93
HMGB1-208ENST00000490788 BRINP1O60477 761 aa3□□□□□ -1.93
HMGB1-208ENST00000490788 IGSF3O75054 1194 aa3□□□□□ -1.93
HMGB1-208ENST00000490788 ZNF623O75123 536 aa3□□□□□ -1.93
HMGB1-208ENST00000490788 MAFO75444 373 aaPredicted RBP3□□□□□ -1.93
HMGB1-208ENST00000490788 FSBPO95073 299 aa3□□□□□ -1.93
HMGB1-208ENST00000490788 PCDH8O95206 1070 aa3□□□□□ -1.93
HMGB1-208ENST00000490788 STAT3P40763 770 aa3□□□□□ -1.93
HMGB1-208ENST00000490788 ADCYAP1R1P41586 468 aa3□□□□□ -1.93
HMGB1-208ENST00000490788 NRG3P56975 720 aa3□□□□□ -1.93
HMGB1-208ENST00000490788 PHC1P78364 1004 aa3□□□□□ -1.93
HMGB1-208ENST00000490788 SMAD3P84022 425 aaKnown RBP3□□□□□ -1.93
HMGB1-208ENST00000490788 NFYCQ13952 458 aa3□□□□□ -1.93
HMGB1-208ENST00000490788 MYBPC3Q14896 1274 aa3□□□□□ -1.93
HMGB1-208ENST00000490788 BROXQ5VW32 411 aa3□□□□□ -1.93
HMGB1-208ENST00000490788 IQSEC1Q6DN90 963 aa3□□□□□ -1.93
HMGB1-208ENST00000490788 ZNF585AQ6P3V2 769 aa3□□□□□ -1.93
HMGB1-208ENST00000490788 LARP4Q71RC2 724 aaKnown RBP eCLIP3□□□□□ -1.93
HMGB1-208ENST00000490788 ATL2Q8NHH9 583 aa3□□□□□ -1.93
HMGB1-208ENST00000490788 SLC5A5Q92911 643 aa3□□□□□ -1.93
HMGB1-208ENST00000490788 DVL3Q92997 716 aaPredicted RBP3□□□□□ -1.93
HMGB1-208ENST00000490788 FAM89AQ96GI7 184 aa3□□□□□ -1.93
HMGB1-208ENST00000490788 UIMC1Q96RL1 719 aa3□□□□□ -1.93
HMGB1-208ENST00000490788 RBM15Q96T37 977 aaKnown RBP eCLIP3□□□□□ -1.93
HMGB1-208ENST00000490788 PTPN18Q99952 460 aa3□□□□□ -1.93
HMGB1-208ENST00000490788 DPYSL5Q9BPU6 564 aa3□□□□□ -1.93
HMGB1-208ENST00000490788 NELFAQ9H3P2 528 aa3□□□□□ -1.93
HMGB1-208ENST00000490788 SEMA4AQ9H3S1 761 aa3□□□□□ -1.93
HMGB1-208ENST00000490788 ZMAT4Q9H898 229 aa3□□□□□ -1.93
HMGB1-208ENST00000490788 NCDNQ9UBB6 729 aa3□□□□□ -1.93
HMGB1-208ENST00000490788 DNAI1Q9UI46 699 aa3□□□□□ -1.93
HMGB1-208ENST00000490788 RCAN3Q9UKA8 241 aa3□□□□□ -1.93
HMGB1-208ENST00000490788 USP18Q9UMW8 372 aa3□□□□□ -1.93
HMGB1-208ENST00000490788 ZFR2Q9UPR6 939 aaKnown RBP3□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms