RNA–Protein interactions for RNA: ENST00000489961.1

VPS13D-210, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 443 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-210ENST00000489961 ASAP3Q8TDY4 903 aa12.05□□□□□ -0.48
VPS13D-210ENST00000489961 LRRC15Q8TF66 581 aa12.05□□□□□ -0.48
VPS13D-210ENST00000489961 DHX58Q96C10 678 aa12.05□□□□□ -0.48
VPS13D-210ENST00000489961 IFT74Q96LB3 600 aa12.05□□□□□ -0.48
VPS13D-210ENST00000489961 RUSC1Q9BVN2 902 aa12.05□□□□□ -0.48
VPS13D-210ENST00000489961 LRRC27Q9C0I9 530 aa12.05□□□□□ -0.48
VPS13D-210ENST00000489961 KCNH3Q9ULD8 1083 aa12.05□□□□□ -0.48
VPS13D-210ENST00000489961 TET1Q8NFU7 2136 aa12.05□□□□□ -0.48
VPS13D-210ENST00000489961 A0A1B0GVL5 298 aa12.04□□□□□ -0.48
VPS13D-210ENST00000489961 ABHD14A-ACY1A0A1B0GW23 586 aa12.04□□□□□ -0.48
VPS13D-210ENST00000489961 LRRIQ4A6NIV6 560 aa12.04□□□□□ -0.48
VPS13D-210ENST00000489961 ZBBXA8MT70 800 aa12.04□□□□□ -0.48
VPS13D-210ENST00000489961 POLR2DO15514 142 aaKnown RBP12.04□□□□□ -0.48
VPS13D-210ENST00000489961 EFCAB14O75071 495 aa12.04□□□□□ -0.48
VPS13D-210ENST00000489961 BAIAP3O94812 1187 aa12.04□□□□□ -0.48
VPS13D-210ENST00000489961 PFKFB1P16118 471 aa12.04□□□□□ -0.48
VPS13D-210ENST00000489961 SFPQP23246 707 aaKnown RBP eCLIP12.04□□□□□ -0.48
VPS13D-210ENST00000489961 CD52P31358 61 aa12.04□□□□□ -0.48
VPS13D-210ENST00000489961 NAMPTP43490 491 aa12.04□□□□□ -0.48
VPS13D-210ENST00000489961 RAD51AP2Q09MP3 1159 aa12.04□□□□□ -0.48
VPS13D-210ENST00000489961 NFX1Q12986 1120 aaKnown RBP12.04□□□□□ -0.48
VPS13D-210ENST00000489961 CAPSQ13938 189 aa12.04□□□□□ -0.48
VPS13D-210ENST00000489961 SHHQ15465 462 aa12.04□□□□□ -0.48
VPS13D-210ENST00000489961 TPRNQ4KMQ1 711 aa12.04□□□□□ -0.48
VPS13D-210ENST00000489961 NAALADL2Q58DX5 795 aa12.04□□□□□ -0.48
VPS13D-210ENST00000489961 OTOP2Q7RTS6 562 aa12.04□□□□□ -0.48
VPS13D-210ENST00000489961 SRGAP1Q7Z6B7 1085 aa12.04□□□□□ -0.48
VPS13D-210ENST00000489961 TDHQ8IZJ6 230 aa12.04□□□□□ -0.48
VPS13D-210ENST00000489961 FSIP1Q8NA03 581 aa12.04□□□□□ -0.48
VPS13D-210ENST00000489961 TMEM40Q8WWA1 233 aa12.04□□□□□ -0.48
VPS13D-210ENST00000489961 HERVK_113Q902F9 699 aa12.04□□□□□ -0.48
VPS13D-210ENST00000489961 MRPS27Q92552 414 aaKnown RBP12.04□□□□□ -0.48
VPS13D-210ENST00000489961 VWCEQ96DN2 955 aa12.04□□□□□ -0.48
VPS13D-210ENST00000489961 RNPC3Q96LT9 517 aaKnown RBP12.04□□□□□ -0.48
VPS13D-210ENST00000489961 FTHL17Q9BXU8 183 aa12.04□□□□□ -0.48
VPS13D-210ENST00000489961 OSBPL7Q9BZF2 842 aa12.04□□□□□ -0.48
VPS13D-210ENST00000489961 AGO3Q9H9G7 860 aaKnown RBP12.04□□□□□ -0.48
VPS13D-210ENST00000489961 C17orf75Q9HAS0 396 aa12.04□□□□□ -0.48
VPS13D-210ENST00000489961 MAGEF1Q9HAY2 307 aa12.04□□□□□ -0.48
VPS13D-210ENST00000489961 KCNG1Q9UIX4 513 aa12.04□□□□□ -0.48
VPS13D-210ENST00000489961 ODF2LQ9ULJ1 636 aa12.04□□□□□ -0.48
VPS13D-210ENST00000489961 PADI3Q9ULW8 664 aa12.04□□□□□ -0.48
VPS13D-210ENST00000489961 NOC2LQ9Y3T9 749 aaKnown RBP12.04□□□□□ -0.48
VPS13D-210ENST00000489961 CEP290O15078 2479 aa12.04□□□□□ -0.48
VPS13D-210ENST00000489961 MICAL3Q7RTP6 2002 aa12.03□□□□□ -0.48
VPS13D-210ENST00000489961 A0A1W2PPC1 479 aa12.03□□□□□ -0.48
VPS13D-210ENST00000489961 TBCAO75347 108 aaKnown RBP12.03□□□□□ -0.48
VPS13D-210ENST00000489961 SYKP43405 635 aa12.03□□□□□ -0.48
VPS13D-210ENST00000489961 KCNJ6P48051 423 aa12.03□□□□□ -0.48
VPS13D-210ENST00000489961 PTENP60484 403 aa12.03□□□□□ -0.48
VPS13D-210ENST00000489961 AMPD3Q01432 767 aa12.03□□□□□ -0.48
VPS13D-210ENST00000489961 DMP1Q13316 513 aaPredicted RBP12.03□□□□□ -0.48
VPS13D-210ENST00000489961 E2F4Q16254 413 aa12.03□□□□□ -0.48
VPS13D-210ENST00000489961 ARSHQ5FYA8 562 aa12.03□□□□□ -0.48
VPS13D-210ENST00000489961 C9orf50Q5SZB4 431 aa12.03□□□□□ -0.48
VPS13D-210ENST00000489961 FAM228AQ86W67 206 aa12.03□□□□□ -0.48
VPS13D-210ENST00000489961 IFNLR1Q8IU57 520 aaPredicted RBP12.03□□□□□ -0.48
VPS13D-210ENST00000489961 ZBTB8OSQ8IWT0 167 aa12.03□□□□□ -0.48
VPS13D-210ENST00000489961 CEP57L1Q8IYX8 460 aa12.03□□□□□ -0.48
VPS13D-210ENST00000489961 DEPTORQ8TB45 409 aa12.03□□□□□ -0.48
VPS13D-210ENST00000489961 REEP2Q9BRK0 252 aa12.03□□□□□ -0.48
VPS13D-210ENST00000489961 NFKBIZQ9BYH8 718 aa12.03□□□□□ -0.48
VPS13D-210ENST00000489961 C2orf40Q9H1Z8 148 aa12.03□□□□□ -0.48
VPS13D-210ENST00000489961 TNMDQ9H2S6 317 aa12.03□□□□□ -0.48
VPS13D-210ENST00000489961 PRO3102Q9H379 93 aa12.03□□□□□ -0.48
VPS13D-210ENST00000489961 IFT122Q9HBG6 1241 aa12.03□□□□□ -0.48
VPS13D-210ENST00000489961 ERVK-5Q9HDB9 667 aa12.03□□□□□ -0.48
VPS13D-210ENST00000489961 LARSQ9P2J5 1176 aaKnown RBP12.03□□□□□ -0.48
VPS13D-210ENST00000489961 USP25Q9UHP3 1055 aa12.03□□□□□ -0.48
VPS13D-210ENST00000489961 ST3GAL5Q9UNP4 418 aa12.03□□□□□ -0.48
VPS13D-210ENST00000489961 COLQQ9Y215 455 aaPredicted RBP12.03□□□□□ -0.48
VPS13D-210ENST00000489961 HPSEQ9Y251 543 aa12.03□□□□□ -0.48
VPS13D-210ENST00000489961 NPHP3-ACAD11A0A0J9YXS1 232 aa12.02□□□□□ -0.49
VPS13D-210ENST00000489961 FAM237AA0A1B0GTK4 181 aa12.02□□□□□ -0.49
VPS13D-210ENST00000489961 CCDC169A6NNP5 214 aa12.02□□□□□ -0.49
VPS13D-210ENST00000489961 INO80B-WBP1J3KQ70 363 aa12.02□□□□□ -0.49
VPS13D-210ENST00000489961 ERLIN2O94905 339 aa12.02□□□□□ -0.49
VPS13D-210ENST00000489961 FAM13AO94988 1023 aa12.02□□□□□ -0.49
VPS13D-210ENST00000489961 PEX3P56589 373 aa12.02□□□□□ -0.49
VPS13D-210ENST00000489961 CACNB1Q02641 598 aaPredicted RBP12.02□□□□□ -0.49
VPS13D-210ENST00000489961 NCBP1Q09161 790 aaKnown RBP12.02□□□□□ -0.49
VPS13D-210ENST00000489961 MAPK7Q13164 816 aa12.02□□□□□ -0.49
VPS13D-210ENST00000489961 GIT2Q14161 759 aa12.02□□□□□ -0.49
VPS13D-210ENST00000489961 PCBP1Q15365 356 aaKnown RBP eCLIP12.02□□□□□ -0.49
VPS13D-210ENST00000489961 CATSPER4Q7RTX7 472 aa12.02□□□□□ -0.49
VPS13D-210ENST00000489961 DAW1Q8N136 415 aa12.02□□□□□ -0.49
VPS13D-210ENST00000489961 BSNDQ8WZ55 320 aa12.02□□□□□ -0.49
VPS13D-210ENST00000489961 DDX12PQ92771 950 aa12.02□□□□□ -0.49
VPS13D-210ENST00000489961 ZHX3Q9H4I2 956 aa12.02□□□□□ -0.49
VPS13D-210ENST00000489961 POLD4Q9HCU8 107 aa12.02□□□□□ -0.49
VPS13D-210ENST00000489961 KBTBD4Q9NVX7 518 aa12.02□□□□□ -0.49
VPS13D-210ENST00000489961 SLC4A7Q9Y6M7 1214 aa12.02□□□□□ -0.49
VPS13D-210ENST00000489961 DENND3A2RUS2 1198 aa12.01□□□□□ -0.49
VPS13D-210ENST00000489961 MYMKA6NI61 221 aa12.01□□□□□ -0.49
VPS13D-210ENST00000489961 SFI1A8K8P3 1242 aa12.01□□□□□ -0.49
VPS13D-210ENST00000489961 CSDE1O75534 798 aaKnown RBP12.01□□□□□ -0.49
VPS13D-210ENST00000489961 AMHP03971 560 aa12.01□□□□□ -0.49
VPS13D-210ENST00000489961 SLFN14P0C7P3 912 aa12.01□□□□□ -0.49
VPS13D-210ENST00000489961 PLS3P13797 630 aa12.01□□□□□ -0.49
VPS13D-210ENST00000489961 ZSCAN20P17040 1043 aaPredicted RBP12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms