RNA–Protein interactions for RNA: ENST00000489562.5

C9orf3-221, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 646 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-221ENST00000489562 SFR1Q86XK3 245 aa15.34■□□□□ 0.05
C9orf3-221ENST00000489562 RHPN2Q8IUC4 686 aa15.34■□□□□ 0.05
C9orf3-221ENST00000489562 FAM178BQ8IXR5 827 aa15.34■□□□□ 0.05
C9orf3-221ENST00000489562 ASAP3Q8TDY4 903 aa15.34■□□□□ 0.05
C9orf3-221ENST00000489562 PRPF31Q8WWY3 499 aaKnown RBP15.34■□□□□ 0.05
C9orf3-221ENST00000489562 CTAGE1Q96RT6 745 aa15.34■□□□□ 0.05
C9orf3-221ENST00000489562 NTPCRQ9BSD7 190 aaKnown RBP15.34■□□□□ 0.05
C9orf3-221ENST00000489562 FAM49AQ9H0Q0 323 aaPredicted RBP15.34■□□□□ 0.05
C9orf3-221ENST00000489562 TRMT13Q9NUP7 481 aaKnown RBP15.34■□□□□ 0.05
C9orf3-221ENST00000489562 SFI1A8K8P3 1242 aa15.33■□□□□ 0.04
C9orf3-221ENST00000489562 SLC34A2O95436 690 aa15.33■□□□□ 0.04
C9orf3-221ENST00000489562 CD4P01730 458 aa15.33■□□□□ 0.04
C9orf3-221ENST00000489562 ATN1P54259 1190 aaPredicted RBP15.33■□□□□ 0.04
C9orf3-221ENST00000489562 PEX3P56589 373 aa15.33■□□□□ 0.04
C9orf3-221ENST00000489562 SOX10P56693 466 aa15.33■□□□□ 0.04
C9orf3-221ENST00000489562 RBL2Q08999 1139 aa15.33■□□□□ 0.04
C9orf3-221ENST00000489562 CAPSQ13938 189 aa15.33■□□□□ 0.04
C9orf3-221ENST00000489562 DEPTORQ8TB45 409 aa15.33■□□□□ 0.04
C9orf3-221ENST00000489562 CAGE1Q8TC20 777 aa15.33■□□□□ 0.04
C9orf3-221ENST00000489562 DNAJB3Q8WWF6 145 aa15.33■□□□□ 0.04
C9orf3-221ENST00000489562 ERCC4Q92889 916 aaPredicted RBP15.33■□□□□ 0.04
C9orf3-221ENST00000489562 KCNN1Q92952 543 aa15.33■□□□□ 0.04
C9orf3-221ENST00000489562 ZBTB10Q96DT7 871 aa15.33■□□□□ 0.04
C9orf3-221ENST00000489562 ANP32EQ9BTT0 268 aa15.33■□□□□ 0.04
C9orf3-221ENST00000489562 NFKBIZQ9BYH8 718 aa15.33■□□□□ 0.04
C9orf3-221ENST00000489562 TRPV6Q9H1D0 765 aa15.33■□□□□ 0.04
C9orf3-221ENST00000489562 C2orf40Q9H1Z8 148 aa15.33■□□□□ 0.04
C9orf3-221ENST00000489562 ST6GALNAC4Q9H4F1 302 aa15.33■□□□□ 0.04
C9orf3-221ENST00000489562 TANC1Q9C0D5 1861 aa15.33■□□□□ 0.04
C9orf3-221ENST00000489562 ALPK3Q96L96 1907 aa15.33■□□□□ 0.04
C9orf3-221ENST00000489562 LRRIQ4A6NIV6 560 aa15.32■□□□□ 0.04
C9orf3-221ENST00000489562 CCDC169A6NNP5 214 aa15.32■□□□□ 0.04
C9orf3-221ENST00000489562 PQBP1O60828 265 aaKnown RBP15.32■□□□□ 0.04
C9orf3-221ENST00000489562 KIF20AO95235 890 aa15.32■□□□□ 0.04
C9orf3-221ENST00000489562 VTNP04004 478 aa15.32■□□□□ 0.04
C9orf3-221ENST00000489562 PPP1R2P41236 205 aa15.32■□□□□ 0.04
C9orf3-221ENST00000489562 PHKA2P46019 1235 aa15.32■□□□□ 0.04
C9orf3-221ENST00000489562 NPTX2P47972 431 aa15.32■□□□□ 0.04
C9orf3-221ENST00000489562 GPC3P51654 580 aa15.32■□□□□ 0.04
C9orf3-221ENST00000489562 EFNA5P52803 228 aa15.32■□□□□ 0.04
C9orf3-221ENST00000489562 NCKAP1LP55160 1127 aa15.32■□□□□ 0.04
C9orf3-221ENST00000489562 BFSP2Q13515 415 aa15.32■□□□□ 0.04
C9orf3-221ENST00000489562 MORC3Q14149 939 aa15.32■□□□□ 0.04
C9orf3-221ENST00000489562 TRIM60Q495X7 471 aa15.32■□□□□ 0.04
C9orf3-221ENST00000489562 ZNF658Q5TYW1 1059 aaPredicted RBP15.32■□□□□ 0.04
C9orf3-221ENST00000489562 SASS6Q6UVJ0 657 aa15.32■□□□□ 0.04
C9orf3-221ENST00000489562 IFNLR1Q8IU57 520 aaPredicted RBP15.32■□□□□ 0.04
C9orf3-221ENST00000489562 ZBTB8OSQ8IWT0 167 aa15.32■□□□□ 0.04
C9orf3-221ENST00000489562 RNF149Q8NC42 400 aa15.32■□□□□ 0.04
C9orf3-221ENST00000489562 BSNDQ8WZ55 320 aa15.32■□□□□ 0.04
C9orf3-221ENST00000489562 HVCN1Q96D96 273 aa15.32■□□□□ 0.04
C9orf3-221ENST00000489562 SCLT1Q96NL6 688 aa15.32■□□□□ 0.04
C9orf3-221ENST00000489562 MRPL44Q9H9J2 332 aaKnown RBP15.32■□□□□ 0.04
C9orf3-221ENST00000489562 KMT5AQ9NQR1 393 aa15.32■□□□□ 0.04
C9orf3-221ENST00000489562 MAN1B1Q9UKM7 699 aa15.32■□□□□ 0.04
C9orf3-221ENST00000489562 UBE4BO95155 1302 aa15.32■□□□□ 0.04
C9orf3-221ENST00000489562 K7ENM7 598 aa15.31■□□□□ 0.04
C9orf3-221ENST00000489562 EIF3DO15371 548 aaKnown RBP eCLIP15.31■□□□□ 0.04
C9orf3-221ENST00000489562 NLRP11P59045 1033 aaKnown RBP15.31■□□□□ 0.04
C9orf3-221ENST00000489562 MRPS6P82932 125 aaKnown RBP15.31■□□□□ 0.04
C9orf3-221ENST00000489562 TLE2Q04725 743 aa15.31■□□□□ 0.04
C9orf3-221ENST00000489562 TRIM71Q2Q1W2 868 aaKnown RBP15.31■□□□□ 0.04
C9orf3-221ENST00000489562 COBLL1Q53SF7 1204 aa15.31■□□□□ 0.04
C9orf3-221ENST00000489562 CDCA2Q69YH5 1023 aaPredicted RBP15.31■□□□□ 0.04
C9orf3-221ENST00000489562 NLRP7Q8WX94 980 aa15.31■□□□□ 0.04
C9orf3-221ENST00000489562 DHX38Q92620 1227 aaKnown RBP15.31■□□□□ 0.04
C9orf3-221ENST00000489562 NLRP4Q96MN2 994 aa15.31■□□□□ 0.04
C9orf3-221ENST00000489562 FIZ1Q96SL8 496 aa15.31■□□□□ 0.04
C9orf3-221ENST00000489562 INO80BQ9C086 356 aaPredicted RBP15.31■□□□□ 0.04
C9orf3-221ENST00000489562 POLD4Q9HCU8 107 aa15.31■□□□□ 0.04
C9orf3-221ENST00000489562 ARHGAP28Q9P2N2 729 aa15.31■□□□□ 0.04
C9orf3-221ENST00000489562 PCDHB13Q9Y5F0 798 aa15.31■□□□□ 0.04
C9orf3-221ENST00000489562 TRPV2Q9Y5S1 764 aa15.31■□□□□ 0.04
C9orf3-221ENST00000489562 PITPNM1O00562 1244 aa15.3■□□□□ 0.04
C9orf3-221ENST00000489562 GPR32O75388 356 aa15.3■□□□□ 0.04
C9orf3-221ENST00000489562 SRGAP2CP0DJJ0 459 aa15.3■□□□□ 0.04
C9orf3-221ENST00000489562 THPOP40225 353 aa15.3■□□□□ 0.04
C9orf3-221ENST00000489562 CRYBB1P53674 252 aaPredicted RBP15.3■□□□□ 0.04
C9orf3-221ENST00000489562 PTENP60484 403 aa15.3■□□□□ 0.04
C9orf3-221ENST00000489562 STIM1Q13586 685 aa15.3■□□□□ 0.04
C9orf3-221ENST00000489562 PCBP1Q15365 356 aaKnown RBP eCLIP15.3■□□□□ 0.04
C9orf3-221ENST00000489562 LRRC26Q2I0M4 334 aa15.3■□□□□ 0.04
C9orf3-221ENST00000489562 ZSCAN23Q3MJ62 389 aa15.3■□□□□ 0.04
C9orf3-221ENST00000489562 FAM26DQ5JW98 314 aa15.3■□□□□ 0.04
C9orf3-221ENST00000489562 ZNF720Q7Z2F6 126 aa15.3■□□□□ 0.04
C9orf3-221ENST00000489562 HAUS6Q7Z4H7 955 aa15.3■□□□□ 0.04
C9orf3-221ENST00000489562 SRGAP1Q7Z6B7 1085 aa15.3■□□□□ 0.04
C9orf3-221ENST00000489562 TMEM161BQ8NDZ6 487 aa15.3■□□□□ 0.04
C9orf3-221ENST00000489562 CELF4Q9BZC1 486 aaKnown RBP15.3■□□□□ 0.04
C9orf3-221ENST00000489562 GCOM2Q9BZD3 368 aaPredicted RBP15.3■□□□□ 0.04
C9orf3-221ENST00000489562 ADAMTS10Q9H324 1103 aa15.3■□□□□ 0.04
C9orf3-221ENST00000489562 TMEM134Q9H6X4 195 aa15.3■□□□□ 0.04
C9orf3-221ENST00000489562 ATP11BQ9Y2G3 1177 aa15.3■□□□□ 0.04
C9orf3-221ENST00000489562 A0A087WZ62 844 aa15.29■□□□□ 0.04
C9orf3-221ENST00000489562 CCDC85CA6NKD9 419 aa15.29■□□□□ 0.04
C9orf3-221ENST00000489562 BIN1O00499 593 aa15.29■□□□□ 0.04
C9orf3-221ENST00000489562 SLC16A4O15374 487 aa15.29■□□□□ 0.04
C9orf3-221ENST00000489562 PPP1R37O75864 691 aa15.29■□□□□ 0.04
C9orf3-221ENST00000489562 GCNT3O95395 438 aa15.29■□□□□ 0.04
C9orf3-221ENST00000489562 CLTBP09497 229 aa15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms