RNA–Protein interactions for RNA: ENST00000489028.1

RFC4-213, Transcript of replication factor C subunit 4, humanhuman

TSL 3

Gene RFC4, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4-213ENST00000489028 DDX46Q7L014 1031 aaKnown RBP5.26□□□□□ -1.57
RFC4-213ENST00000489028 LYSMD2Q8IV50 215 aa5.26□□□□□ -1.57
RFC4-213ENST00000489028 AFAP1L2Q8N4X5 818 aa5.26□□□□□ -1.57
RFC4-213ENST00000489028 DVL3Q92997 716 aaPredicted RBP5.26□□□□□ -1.57
RFC4-213ENST00000489028 USP7Q93009 1102 aa5.26□□□□□ -1.57
RFC4-213ENST00000489028 WDR92Q96MX6 357 aa5.26□□□□□ -1.57
RFC4-213ENST00000489028 GPHA2Q96T91 129 aa5.26□□□□□ -1.57
RFC4-213ENST00000489028 SLTMQ9NWH9 1034 aaKnown RBP eCLIP5.26□□□□□ -1.57
RFC4-213ENST00000489028 USP36Q9P275 1121 aaKnown RBP5.26□□□□□ -1.57
RFC4-213ENST00000489028 TMPRSS11EQ9UL52 423 aa5.26□□□□□ -1.57
RFC4-213ENST00000489028 RBM8AQ9Y5S9 174 aaKnown RBP5.26□□□□□ -1.57
RFC4-213ENST00000489028 SLC30A1Q9Y6M5 507 aa5.26□□□□□ -1.57
RFC4-213ENST00000489028 MYPNQ86TC9 1320 aa5.25□□□□□ -1.57
RFC4-213ENST00000489028 KDM1AO60341 852 aa5.25□□□□□ -1.57
RFC4-213ENST00000489028 H2AFYO75367 372 aaKnown RBP5.25□□□□□ -1.57
RFC4-213ENST00000489028 VIL1P09327 827 aaKnown RBP5.25□□□□□ -1.57
RFC4-213ENST00000489028 CLEC2LP0C7M8 214 aa5.25□□□□□ -1.57
RFC4-213ENST00000489028 POU3F3P20264 500 aaPredicted RBP5.25□□□□□ -1.57
RFC4-213ENST00000489028 SELENOPP49908 381 aa5.25□□□□□ -1.57
RFC4-213ENST00000489028 MANFP55145 182 aaKnown RBP5.25□□□□□ -1.57
RFC4-213ENST00000489028 SESN2P58004 480 aaPredicted RBP5.25□□□□□ -1.57
RFC4-213ENST00000489028 TCIRG1Q13488 830 aa5.25□□□□□ -1.57
RFC4-213ENST00000489028 RIN1Q13671 783 aa5.25□□□□□ -1.57
RFC4-213ENST00000489028 PDCD1Q15116 288 aa5.25□□□□□ -1.57
RFC4-213ENST00000489028 TAF7LQ5H9L4 462 aa5.25□□□□□ -1.57
RFC4-213ENST00000489028 C11orf74Q86VG3 221 aa5.25□□□□□ -1.57
RFC4-213ENST00000489028 PALM2Q8IXS6 379 aa5.25□□□□□ -1.57
RFC4-213ENST00000489028 CLRN3Q8NCR9 226 aa5.25□□□□□ -1.57
RFC4-213ENST00000489028 SHCBP1Q8NEM2 672 aa5.25□□□□□ -1.57
RFC4-213ENST00000489028 CHAC2Q8WUX2 184 aa5.25□□□□□ -1.57
RFC4-213ENST00000489028 GFM2Q969S9 779 aaKnown RBP5.25□□□□□ -1.57
RFC4-213ENST00000489028 SLC7A6OSQ96CW6 309 aaPredicted RBP5.25□□□□□ -1.57
RFC4-213ENST00000489028 RPL10LQ96L21 214 aaKnown RBP5.25□□□□□ -1.57
RFC4-213ENST00000489028 FDXACB1Q9BRP7 624 aaPredicted RBP5.25□□□□□ -1.57
RFC4-213ENST00000489028 NOL10Q9BSC4 688 aaKnown RBP5.25□□□□□ -1.57
RFC4-213ENST00000489028 IFT22Q9H7X7 185 aa5.25□□□□□ -1.57
RFC4-213ENST00000489028 PMS2P1A4D2B8 440 aa5.24□□□□□ -1.57
RFC4-213ENST00000489028 INSRRP14616 1297 aa5.24□□□□□ -1.57
RFC4-213ENST00000489028 SOX5P35711 763 aa5.24□□□□□ -1.57
RFC4-213ENST00000489028 BPIFB4P59827 614 aa5.24□□□□□ -1.57
RFC4-213ENST00000489028 FOXL1Q12952 345 aa5.24□□□□□ -1.57
RFC4-213ENST00000489028 FRMD7Q6ZUT3 714 aa5.24□□□□□ -1.57
RFC4-213ENST00000489028 ADGRE4PQ86SQ3 457 aa5.24□□□□□ -1.57
RFC4-213ENST00000489028 SLC41A1Q8IVJ1 513 aa5.24□□□□□ -1.57
RFC4-213ENST00000489028 ANKRD53Q8N9V6 530 aa5.24□□□□□ -1.57
RFC4-213ENST00000489028 PPP1R14CQ8TAE6 165 aa5.24□□□□□ -1.57
RFC4-213ENST00000489028 RABGGTAQ92696 567 aa5.24□□□□□ -1.57
RFC4-213ENST00000489028 GCDHQ92947 438 aaPredicted RBP5.24□□□□□ -1.57
RFC4-213ENST00000489028 FERMT2Q96AC1 680 aa5.24□□□□□ -1.57
RFC4-213ENST00000489028 TMEM176AQ96HP8 235 aa5.24□□□□□ -1.57
RFC4-213ENST00000489028 TTC1Q99614 292 aa5.24□□□□□ -1.57
RFC4-213ENST00000489028 ANO3Q9BYT9 981 aa5.24□□□□□ -1.57
RFC4-213ENST00000489028 SLC6A15Q9H2J7 730 aa5.24□□□□□ -1.57
RFC4-213ENST00000489028 DEF6Q9H4E7 631 aa5.24□□□□□ -1.57
RFC4-213ENST00000489028 VTA1Q9NP79 307 aa5.24□□□□□ -1.57
RFC4-213ENST00000489028 TOPORSQ9NS56 1045 aaPredicted RBP5.24□□□□□ -1.57
RFC4-213ENST00000489028 TSC22D4Q9Y3Q8 395 aa5.24□□□□□ -1.57
RFC4-213ENST00000489028 C1QTNF3-AMACRE9PGA6 284 aa5.23□□□□□ -1.57
RFC4-213ENST00000489028 ZEB2O60315 1214 aa5.23□□□□□ -1.57
RFC4-213ENST00000489028 TOX4O94842 621 aa5.23□□□□□ -1.57
RFC4-213ENST00000489028 EYA4O95677 639 aa5.23□□□□□ -1.57
RFC4-213ENST00000489028 COMTP21964 271 aa5.23□□□□□ -1.57
RFC4-213ENST00000489028 MSX2P35548 267 aaPredicted RBP5.23□□□□□ -1.57
RFC4-213ENST00000489028 TRIM25Q14258 630 aaKnown RBP5.23□□□□□ -1.57
RFC4-213ENST00000489028 SPDYAQ5MJ70 313 aa5.23□□□□□ -1.57
RFC4-213ENST00000489028 KRT26Q7Z3Y9 468 aa5.23□□□□□ -1.57
RFC4-213ENST00000489028 HDGFL2Q7Z4V5 671 aaPredicted RBP5.23□□□□□ -1.57
RFC4-213ENST00000489028 RASSF3Q86WH2 238 aa5.23□□□□□ -1.57
RFC4-213ENST00000489028 ZNF808Q8N4W9 903 aaPredicted RBP5.23□□□□□ -1.57
RFC4-213ENST00000489028 PLA2G15Q8NCC3 412 aa5.23□□□□□ -1.57
RFC4-213ENST00000489028 PIK3C3Q8NEB9 887 aa5.23□□□□□ -1.57
RFC4-213ENST00000489028 LPPQ93052 612 aa5.23□□□□□ -1.57
RFC4-213ENST00000489028 GPR20Q99678 358 aa5.23□□□□□ -1.57
RFC4-213ENST00000489028 PLA2G3Q9NZ20 509 aa5.23□□□□□ -1.57
RFC4-213ENST00000489028 HECAQ9UBI9 543 aaPredicted RBP5.23□□□□□ -1.57
RFC4-213ENST00000489028 USP18Q9UMW8 372 aa5.23□□□□□ -1.57
RFC4-213ENST00000489028 APOBEC2Q9Y235 224 aaKnown RBP5.23□□□□□ -1.57
RFC4-213ENST00000489028 TCAF1Q9Y4C2 921 aa5.23□□□□□ -1.57
RFC4-213ENST00000489028 PCDHB6Q9Y5E3 794 aa5.23□□□□□ -1.57
RFC4-213ENST00000489028 ST20-MTHFSA0A0A6YYL1 179 aa5.22□□□□□ -1.57
RFC4-213ENST00000489028 SEC24DO94855 1032 aaPredicted RBP5.22□□□□□ -1.57
RFC4-213ENST00000489028 GAAP10253 952 aa5.22□□□□□ -1.57
RFC4-213ENST00000489028 ACO1P21399 889 aaKnown RBP5.22□□□□□ -1.57
RFC4-213ENST00000489028 RPS19P39019 145 aaKnown RBP5.22□□□□□ -1.57
RFC4-213ENST00000489028 CD69Q07108 199 aa5.22□□□□□ -1.57
RFC4-213ENST00000489028 STAT4Q14765 748 aa5.22□□□□□ -1.57
RFC4-213ENST00000489028 PITRM1Q5JRX3 1037 aa5.22□□□□□ -1.57
RFC4-213ENST00000489028 CCDC62Q6P9F0 684 aa5.22□□□□□ -1.57
RFC4-213ENST00000489028 MAMDC4Q6UXC1 1216 aa5.22□□□□□ -1.57
RFC4-213ENST00000489028 GAREM2Q75VX8 874 aa5.22□□□□□ -1.57
RFC4-213ENST00000489028 POLNQ7Z5Q5 900 aa5.22□□□□□ -1.57
RFC4-213ENST00000489028 SPRED1Q7Z699 444 aa5.22□□□□□ -1.57
RFC4-213ENST00000489028 CMIPQ8IY22 773 aa5.22□□□□□ -1.57
RFC4-213ENST00000489028 CDYL2Q8N8U2 506 aa5.22□□□□□ -1.57
RFC4-213ENST00000489028 HIST1H2AHQ96KK5 128 aa5.22□□□□□ -1.57
RFC4-213ENST00000489028 ADOQ96SZ5 270 aa5.22□□□□□ -1.57
RFC4-213ENST00000489028 HIST1H2AJQ99878 128 aa5.22□□□□□ -1.57
RFC4-213ENST00000489028 OSBPL6Q9BZF3 934 aa5.22□□□□□ -1.57
RFC4-213ENST00000489028 NELFAQ9H3P2 528 aa5.22□□□□□ -1.57
RFC4-213ENST00000489028 MSL2Q9HCI7 577 aa5.22□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms