RNA–Protein interactions for RNA: ENST00000486533.1

COL12A1-208, Transcript of collagen type XII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL12A1, Length 1,554 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1-208ENST00000486533 CCDC12Q8WUD4 166 aaPredicted RBP9.97□□□□□ -0.81
COL12A1-208ENST00000486533 PAGE5Q96GU1 130 aa9.97□□□□□ -0.81
COL12A1-208ENST00000486533 CUEDC2Q9H467 287 aa9.97□□□□□ -0.81
COL12A1-208ENST00000486533 SLC28A3Q9HAS3 691 aa9.97□□□□□ -0.81
COL12A1-208ENST00000486533 CALCOCO1Q9P1Z2 691 aa9.97□□□□□ -0.81
COL12A1-208ENST00000486533 HCSTQ9UBK5 93 aa9.97□□□□□ -0.81
COL12A1-208ENST00000486533 HDAC6Q9UBN7 1215 aa9.97□□□□□ -0.81
COL12A1-208ENST00000486533 NOL12Q9UGY1 213 aaKnown RBP eCLIP9.97□□□□□ -0.81
COL12A1-208ENST00000486533 GTF2IRD1Q9UHL9 959 aa9.97□□□□□ -0.81
COL12A1-208ENST00000486533 DOCK5Q9H7D0 1870 aa9.96□□□□□ -0.81
COL12A1-208ENST00000486533 FRMPD4Q14CM0 1322 aa9.96□□□□□ -0.81
COL12A1-208ENST00000486533 CTAGE9A4FU28 777 aa9.96□□□□□ -0.82
COL12A1-208ENST00000486533 CCDC151A5D8V7 595 aa9.96□□□□□ -0.82
COL12A1-208ENST00000486533 MEIS2O14770 477 aa9.96□□□□□ -0.82
COL12A1-208ENST00000486533 STAM2O75886 525 aa9.96□□□□□ -0.82
COL12A1-208ENST00000486533 PNMA6AP0CW24 399 aaPredicted RBP9.96□□□□□ -0.82
COL12A1-208ENST00000486533 SCG2P13521 617 aa9.96□□□□□ -0.82
COL12A1-208ENST00000486533 ATP2A2P16615 1042 aaKnown RBP9.96□□□□□ -0.82
COL12A1-208ENST00000486533 RABGGTBP53611 331 aa9.96□□□□□ -0.82
COL12A1-208ENST00000486533 NLRP5P59047 1200 aa9.96□□□□□ -0.82
COL12A1-208ENST00000486533 DPYDQ12882 1025 aa9.96□□□□□ -0.82
COL12A1-208ENST00000486533 PAK1Q13153 545 aa9.96□□□□□ -0.82
COL12A1-208ENST00000486533 NR5A1Q13285 461 aa9.96□□□□□ -0.82
COL12A1-208ENST00000486533 ORC2Q13416 577 aaPredicted RBP9.96□□□□□ -0.82
COL12A1-208ENST00000486533 CYP26C1Q6V0L0 522 aa9.96□□□□□ -0.82
COL12A1-208ENST00000486533 HEATR3Q7Z4Q2 680 aa9.96□□□□□ -0.82
COL12A1-208ENST00000486533 FAM114A1Q8IWE2 563 aa9.96□□□□□ -0.82
COL12A1-208ENST00000486533 TET1Q8NFU7 2136 aa9.96□□□□□ -0.82
COL12A1-208ENST00000486533 AFAP1L1Q8TED9 768 aa9.96□□□□□ -0.82
COL12A1-208ENST00000486533 SYMPKQ92797 1274 aaKnown RBP9.96□□□□□ -0.82
COL12A1-208ENST00000486533 VWCEQ96DN2 955 aa9.96□□□□□ -0.82
COL12A1-208ENST00000486533 INPP4AQ96PE3 977 aaPredicted RBP9.96□□□□□ -0.82
COL12A1-208ENST00000486533 CARD6Q9BX69 1037 aa9.96□□□□□ -0.82
COL12A1-208ENST00000486533 NKX2-4Q9H2Z4 354 aa9.96□□□□□ -0.82
COL12A1-208ENST00000486533 PRDM12Q9H4Q4 367 aa9.96□□□□□ -0.82
COL12A1-208ENST00000486533 PSTPIP2Q9H939 334 aa9.96□□□□□ -0.82
COL12A1-208ENST00000486533 MAGEC2Q9UBF1 373 aaPredicted RBP9.96□□□□□ -0.82
COL12A1-208ENST00000486533 LIMA1Q9UHB6 759 aaKnown RBP9.96□□□□□ -0.82
COL12A1-208ENST00000486533 YBX2Q9Y2T7 364 aaKnown RBP9.96□□□□□ -0.82
COL12A1-208ENST00000486533 TRANK1O15050 2925 aa9.95□□□□□ -0.82
COL12A1-208ENST00000486533 PIK3CDO00329 1044 aa9.95□□□□□ -0.82
COL12A1-208ENST00000486533 MFAP3LO75121 409 aa9.95□□□□□ -0.82
COL12A1-208ENST00000486533 HOXD8P13378 290 aaPredicted RBP9.95□□□□□ -0.82
COL12A1-208ENST00000486533 SELPP16109 830 aa9.95□□□□□ -0.82
COL12A1-208ENST00000486533 ATP2B1P20020 1258 aa9.95□□□□□ -0.82
COL12A1-208ENST00000486533 FECHP22830 423 aa9.95□□□□□ -0.82
COL12A1-208ENST00000486533 SP4Q02446 784 aa9.95□□□□□ -0.82
COL12A1-208ENST00000486533 CUL4BQ13620 913 aa9.95□□□□□ -0.82
COL12A1-208ENST00000486533 NEDD9Q14511 834 aa9.95□□□□□ -0.82
COL12A1-208ENST00000486533 NAA30Q147X3 362 aaPredicted RBP9.95□□□□□ -0.82
COL12A1-208ENST00000486533 WHAMMP3Q1A5X7 153 aa9.95□□□□□ -0.82
COL12A1-208ENST00000486533 PCNX4Q63HM2 1172 aa9.95□□□□□ -0.82
COL12A1-208ENST00000486533 LRRC8DQ7L1W4 858 aa9.95□□□□□ -0.82
COL12A1-208ENST00000486533 CYFIP1Q7L576 1253 aa9.95□□□□□ -0.82
COL12A1-208ENST00000486533 SRGAP1Q7Z6B7 1085 aa9.95□□□□□ -0.82
COL12A1-208ENST00000486533 TXLNBQ8N3L3 684 aa9.95□□□□□ -0.82
COL12A1-208ENST00000486533 ZDHHC16Q969W1 377 aa9.95□□□□□ -0.82
COL12A1-208ENST00000486533 GAS2L1Q99501 681 aaPredicted RBP9.95□□□□□ -0.82
COL12A1-208ENST00000486533 INTS13Q9NVM9 706 aa9.95□□□□□ -0.82
COL12A1-208ENST00000486533 VPS54Q9P1Q0 977 aa9.95□□□□□ -0.82
COL12A1-208ENST00000486533 CNTNAP5Q8WYK1 1306 aa9.95□□□□□ -0.82
COL12A1-208ENST00000486533 XIRP2A4UGR9 3374 aa9.94□□□□□ -0.82
COL12A1-208ENST00000486533 REV3LO60673 3130 aa9.94□□□□□ -0.82
COL12A1-208ENST00000486533 SPDYE3A6NKU9 549 aa9.94□□□□□ -0.82
COL12A1-208ENST00000486533 SPATA31C2B4DYI2 1134 aa9.94□□□□□ -0.82
COL12A1-208ENST00000486533 H3BRB1 525 aa9.94□□□□□ -0.82
COL12A1-208ENST00000486533 HAS3O00219 553 aa9.94□□□□□ -0.82
COL12A1-208ENST00000486533 N4BP3O15049 544 aa9.94□□□□□ -0.82
COL12A1-208ENST00000486533 IPO7O95373 1038 aaKnown RBP9.94□□□□□ -0.82
COL12A1-208ENST00000486533 LGALS2P05162 132 aa9.94□□□□□ -0.82
COL12A1-208ENST00000486533 CKBP12277 381 aa9.94□□□□□ -0.82
COL12A1-208ENST00000486533 MYOGP15173 224 aa9.94□□□□□ -0.82
COL12A1-208ENST00000486533 BMP6P22004 513 aa9.94□□□□□ -0.82
COL12A1-208ENST00000486533 EEF1GP26641 437 aaKnown RBP9.94□□□□□ -0.82
COL12A1-208ENST00000486533 ICAM3P32942 547 aa9.94□□□□□ -0.82
COL12A1-208ENST00000486533 ZNF200P98182 395 aaPredicted RBP9.94□□□□□ -0.82
COL12A1-208ENST00000486533 PTK7Q13308 1070 aa9.94□□□□□ -0.82
COL12A1-208ENST00000486533 CAMK2BQ13554 666 aa9.94□□□□□ -0.82
COL12A1-208ENST00000486533 UBE2SQ16763 222 aa9.94□□□□□ -0.82
COL12A1-208ENST00000486533 PFKFB3Q16875 520 aaPredicted RBP9.94□□□□□ -0.82
COL12A1-208ENST00000486533 ZNF658Q5TYW1 1059 aaPredicted RBP9.94□□□□□ -0.82
COL12A1-208ENST00000486533 PPP2R2DQ66LE6 453 aa9.94□□□□□ -0.82
COL12A1-208ENST00000486533 WWC2Q6AWC2 1192 aa9.94□□□□□ -0.82
COL12A1-208ENST00000486533 IQCEQ6IPM2 695 aa9.94□□□□□ -0.82
COL12A1-208ENST00000486533 XRRA1Q6P2D8 792 aa9.94□□□□□ -0.82
COL12A1-208ENST00000486533 METTL7BQ6UX53 244 aa9.94□□□□□ -0.82
COL12A1-208ENST00000486533 DHX38Q92620 1227 aaKnown RBP9.94□□□□□ -0.82
COL12A1-208ENST00000486533 RPGRIP1Q96KN7 1286 aa9.94□□□□□ -0.82
COL12A1-208ENST00000486533 C16orf70Q9BSU1 422 aa9.94□□□□□ -0.82
COL12A1-208ENST00000486533 NUP58Q9BVL2 599 aa9.94□□□□□ -0.82
COL12A1-208ENST00000486533 ADAM33Q9BZ11 813 aa9.94□□□□□ -0.82
COL12A1-208ENST00000486533 TUT1Q9H6E5 874 aaKnown RBP9.94□□□□□ -0.82
COL12A1-208ENST00000486533 BCAS3Q9H6U6 928 aa9.94□□□□□ -0.82
COL12A1-208ENST00000486533 ZNHIT6Q9NWK9 470 aaKnown RBP9.94□□□□□ -0.82
COL12A1-208ENST00000486533 CDC23Q9UJX2 597 aa9.94□□□□□ -0.82
COL12A1-208ENST00000486533 PCDHA11Q9Y5I1 949 aa9.94□□□□□ -0.82
COL12A1-208ENST00000486533 V9GY48 417 aaPredicted RBP9.94□□□□□ -0.82
COL12A1-208ENST00000486533 CCDC194A0A1B0GVG4 234 aa9.93□□□□□ -0.82
COL12A1-208ENST00000486533 BICDL2A1A5D9 508 aa9.93□□□□□ -0.82
COL12A1-208ENST00000486533 ZRANB2O95218 330 aaKnown RBP eCLIP9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms