RNA–Protein interactions for RNA: ENST00000482251.2

CPSF4-212, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 574 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-212ENST00000482251 DKC1O60832 514 aaKnown RBP eCLIP11.71□□□□□ -0.53
CPSF4-212ENST00000482251 TBX10O75333 385 aa11.71□□□□□ -0.53
CPSF4-212ENST00000482251 ATF7P17544 494 aaPredicted RBP11.71□□□□□ -0.53
CPSF4-212ENST00000482251 SFPQP23246 707 aaKnown RBP eCLIP11.71□□□□□ -0.53
CPSF4-212ENST00000482251 MCM7P33993 719 aa11.71□□□□□ -0.53
CPSF4-212ENST00000482251 XKR9Q5GH70 373 aa11.71□□□□□ -0.53
CPSF4-212ENST00000482251 CLLU1OSQ5K130 101 aa11.71□□□□□ -0.53
CPSF4-212ENST00000482251 TWF2Q6IBS0 349 aaKnown RBP11.71□□□□□ -0.53
CPSF4-212ENST00000482251 CATSPER4Q7RTX7 472 aa11.71□□□□□ -0.53
CPSF4-212ENST00000482251 RBM23Q86U06 439 aaKnown RBP11.71□□□□□ -0.53
CPSF4-212ENST00000482251 LRRC43Q8N309 656 aa11.71□□□□□ -0.53
CPSF4-212ENST00000482251 HELQQ8TDG4 1101 aa11.71□□□□□ -0.53
CPSF4-212ENST00000482251 LPPQ93052 612 aa11.71□□□□□ -0.53
CPSF4-212ENST00000482251 C8orf76Q96K31 380 aa11.71□□□□□ -0.53
CPSF4-212ENST00000482251 CASD1Q96PB1 797 aa11.71□□□□□ -0.53
CPSF4-212ENST00000482251 EIF2AK1Q9BQI3 630 aaKnown RBP11.71□□□□□ -0.53
CPSF4-212ENST00000482251 TMEM117Q9H0C3 514 aa11.71□□□□□ -0.53
CPSF4-212ENST00000482251 TMEM60Q9H2L4 133 aa11.71□□□□□ -0.53
CPSF4-212ENST00000482251 ELAC1Q9H777 363 aaKnown RBP11.71□□□□□ -0.53
CPSF4-212ENST00000482251 TTC12Q9H892 705 aaPredicted RBP11.71□□□□□ -0.53
CPSF4-212ENST00000482251 PCDHB12Q9Y5F1 795 aa11.71□□□□□ -0.53
CPSF4-212ENST00000482251 COL4A3BPQ9Y5P4 624 aa11.71□□□□□ -0.53
CPSF4-212ENST00000482251 MEIS3P2A8K0S8 358 aa11.7□□□□□ -0.54
CPSF4-212ENST00000482251 FGF18O76093 207 aa11.7□□□□□ -0.54
CPSF4-212ENST00000482251 SRGAP2CP0DJJ0 459 aa11.7□□□□□ -0.54
CPSF4-212ENST00000482251 LAG3P18627 525 aa11.7□□□□□ -0.54
CPSF4-212ENST00000482251 RFC5P40937 340 aa11.7□□□□□ -0.54
CPSF4-212ENST00000482251 NRIP1P48552 1158 aa11.7□□□□□ -0.54
CPSF4-212ENST00000482251 NDUFV1P49821 464 aa11.7□□□□□ -0.54
CPSF4-212ENST00000482251 FAM189BP81408 668 aa11.7□□□□□ -0.54
CPSF4-212ENST00000482251 SAFBQ15424 915 aaKnown RBP eCLIP11.7□□□□□ -0.54
CPSF4-212ENST00000482251 LRRC55Q6ZSA7 311 aa11.7□□□□□ -0.54
CPSF4-212ENST00000482251 ZNF410Q86VK4 478 aa11.7□□□□□ -0.54
CPSF4-212ENST00000482251 C4orf19Q8IY42 314 aa11.7□□□□□ -0.54
CPSF4-212ENST00000482251 NEK9Q8TD19 979 aa11.7□□□□□ -0.54
CPSF4-212ENST00000482251 MICAL1Q8TDZ2 1067 aa11.7□□□□□ -0.54
CPSF4-212ENST00000482251 PSPC1Q8WXF1 523 aaKnown RBP11.7□□□□□ -0.54
CPSF4-212ENST00000482251 KHSRPQ92945 711 aaKnown RBP eCLIP11.7□□□□□ -0.54
CPSF4-212ENST00000482251 CCDC43Q96MW1 224 aaKnown RBP11.7□□□□□ -0.54
CPSF4-212ENST00000482251 JPH2Q9BR39 696 aaPredicted RBP11.7□□□□□ -0.54
CPSF4-212ENST00000482251 DHX33Q9H6R0 707 aaKnown RBP11.7□□□□□ -0.54
CPSF4-212ENST00000482251 CWH43Q9H720 699 aa11.7□□□□□ -0.54
CPSF4-212ENST00000482251 ZSWIM4Q9H7M6 989 aa11.7□□□□□ -0.54
CPSF4-212ENST00000482251 CD320Q9NPF0 282 aa11.7□□□□□ -0.54
CPSF4-212ENST00000482251 AAASQ9NRG9 546 aa11.7□□□□□ -0.54
CPSF4-212ENST00000482251 RNF216Q9NWF9 866 aaPredicted RBP11.7□□□□□ -0.54
CPSF4-212ENST00000482251 PCDHA12Q9UN75 941 aa11.7□□□□□ -0.54
CPSF4-212ENST00000482251 INPP5FQ9Y2H2 1132 aa11.7□□□□□ -0.54
CPSF4-212ENST00000482251 A0A0U1RQF3 1178 aa11.69□□□□□ -0.54
CPSF4-212ENST00000482251 PER2O15055 1255 aa11.69□□□□□ -0.54
CPSF4-212ENST00000482251 HOXA2O43364 376 aa11.69□□□□□ -0.54
CPSF4-212ENST00000482251 SLITRK3O94933 977 aa11.69□□□□□ -0.54
CPSF4-212ENST00000482251 SSTR3P32745 418 aaPredicted RBP11.69□□□□□ -0.54
CPSF4-212ENST00000482251 LTBRP36941 435 aa11.69□□□□□ -0.54
CPSF4-212ENST00000482251 RBM10P98175 930 aaKnown RBP11.69□□□□□ -0.54
CPSF4-212ENST00000482251 GNL2Q13823 731 aaKnown RBP11.69□□□□□ -0.54
CPSF4-212ENST00000482251 NBR1Q14596 966 aa11.69□□□□□ -0.54
CPSF4-212ENST00000482251 COL19A1Q14993 1142 aa11.69□□□□□ -0.54
CPSF4-212ENST00000482251 NAALADL2Q58DX5 795 aa11.69□□□□□ -0.54
CPSF4-212ENST00000482251 PLPP4Q5VZY2 271 aa11.69□□□□□ -0.54
CPSF4-212ENST00000482251 OTUD6AQ7L8S5 288 aa11.69□□□□□ -0.54
CPSF4-212ENST00000482251 ZNF598Q86UK7 904 aaKnown RBP11.69□□□□□ -0.54
CPSF4-212ENST00000482251 ZNF710Q8N1W2 664 aa11.69□□□□□ -0.54
CPSF4-212ENST00000482251 FAM184AQ8NB25 1140 aa11.69□□□□□ -0.54
CPSF4-212ENST00000482251 RNF149Q8NC42 400 aa11.69□□□□□ -0.54
CPSF4-212ENST00000482251 PIGOQ8TEQ8 1089 aa11.69□□□□□ -0.54
CPSF4-212ENST00000482251 PRPF31Q8WWY3 499 aaKnown RBP11.69□□□□□ -0.54
CPSF4-212ENST00000482251 MTRQ99707 1265 aa11.69□□□□□ -0.54
CPSF4-212ENST00000482251 MINDY3Q9H8M7 445 aa11.69□□□□□ -0.54
CPSF4-212ENST00000482251 IFT122Q9HBG6 1241 aa11.69□□□□□ -0.54
CPSF4-212ENST00000482251 XPNPEP1Q9NQW7 623 aa11.69□□□□□ -0.54
CPSF4-212ENST00000482251 TLR9Q9NR96 1032 aa11.69□□□□□ -0.54
CPSF4-212ENST00000482251 DACT1Q9NYF0 836 aa11.69□□□□□ -0.54
CPSF4-212ENST00000482251 BARX2Q9UMQ3 279 aaPredicted RBP11.69□□□□□ -0.54
CPSF4-212ENST00000482251 GRXCR2A6NFK2 248 aa11.68□□□□□ -0.54
CPSF4-212ENST00000482251 NT5C1B-RDH14C9J2C7 533 aa11.68□□□□□ -0.54
CPSF4-212ENST00000482251 USO1O60763 962 aaKnown RBP11.68□□□□□ -0.54
CPSF4-212ENST00000482251 ZC3H11AO75152 810 aaKnown RBP eCLIP11.68□□□□□ -0.54
CPSF4-212ENST00000482251 CA8P35219 290 aa11.68□□□□□ -0.54
CPSF4-212ENST00000482251 PHKA2P46019 1235 aa11.68□□□□□ -0.54
CPSF4-212ENST00000482251 ERVFC1P60507 584 aa11.68□□□□□ -0.54
CPSF4-212ENST00000482251 LAMTOR4Q0VGL1 99 aa11.68□□□□□ -0.54
CPSF4-212ENST00000482251 ZNF174Q15697 407 aa11.68□□□□□ -0.54
CPSF4-212ENST00000482251 CTC1Q2NKJ3 1217 aa11.68□□□□□ -0.54
CPSF4-212ENST00000482251 KCNT2Q6UVM3 1135 aa11.68□□□□□ -0.54
CPSF4-212ENST00000482251 MAEAQ7L5Y9 396 aa11.68□□□□□ -0.54
CPSF4-212ENST00000482251 FERMT3Q86UX7 667 aa11.68□□□□□ -0.54
CPSF4-212ENST00000482251 PPP2R3CQ969Q6 453 aa11.68□□□□□ -0.54
CPSF4-212ENST00000482251 ZNF558Q96NG5 402 aa11.68□□□□□ -0.54
CPSF4-212ENST00000482251 MTMR9Q96QG7 549 aa11.68□□□□□ -0.54
CPSF4-212ENST00000482251 LLPHQ9BRT6 129 aaKnown RBP11.68□□□□□ -0.54
CPSF4-212ENST00000482251 INO80BQ9C086 356 aaPredicted RBP11.68□□□□□ -0.54
CPSF4-212ENST00000482251 GBP3Q9H0R5 595 aa11.68□□□□□ -0.54
CPSF4-212ENST00000482251 ENTPD7Q9NQZ7 604 aa11.68□□□□□ -0.54
CPSF4-212ENST00000482251 SH2B1Q9NRF2 756 aaPredicted RBP11.68□□□□□ -0.54
CPSF4-212ENST00000482251 AGPAT5Q9NUQ2 364 aa11.68□□□□□ -0.54
CPSF4-212ENST00000482251 FAM105AQ9NUU6 356 aa11.68□□□□□ -0.54
CPSF4-212ENST00000482251 C5orf42Q9H799 3197 aa11.67□□□□□ -0.54
CPSF4-212ENST00000482251 FAM86C2PA6NEL3 165 aa11.67□□□□□ -0.54
CPSF4-212ENST00000482251 GLP2RO95838 553 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms