RNA–Protein interactions for RNA: ENST00000481019.5

PTPRF-213, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 3

Gene PTPRF, Length 459 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-213ENST00000481019 ZBED2Q9BTP6 218 aa13.61□□□□□ -0.23
PTPRF-213ENST00000481019 PRDM12Q9H4Q4 367 aa13.61□□□□□ -0.23
PTPRF-213ENST00000481019 RC3H2Q9HBD1 1191 aaKnown RBP13.61□□□□□ -0.23
PTPRF-213ENST00000481019 ATP6V0A4Q9HBG4 840 aa13.61□□□□□ -0.23
PTPRF-213ENST00000481019 ZDHHC9Q9Y397 364 aa13.61□□□□□ -0.23
PTPRF-213ENST00000481019 PPME1Q9Y570 386 aa13.61□□□□□ -0.23
PTPRF-213ENST00000481019 PRUNE2Q8WUY3 3088 aa13.6□□□□□ -0.23
PTPRF-213ENST00000481019 LINC01553A4QN01 128 aa13.6□□□□□ -0.23
PTPRF-213ENST00000481019 GPR182O15218 404 aa13.6□□□□□ -0.23
PTPRF-213ENST00000481019 DGAT1O75907 488 aa13.6□□□□□ -0.23
PTPRF-213ENST00000481019 CAPSQ13938 189 aa13.6□□□□□ -0.23
PTPRF-213ENST00000481019 ADGRE1Q14246 886 aa13.6□□□□□ -0.23
PTPRF-213ENST00000481019 ZRSR1Q15695 479 aaKnown RBP13.6□□□□□ -0.23
PTPRF-213ENST00000481019 FOXD4L6Q3SYB3 417 aaPredicted RBP13.6□□□□□ -0.23
PTPRF-213ENST00000481019 SPECC1Q5M775 1068 aa13.6□□□□□ -0.23
PTPRF-213ENST00000481019 KRT79Q5XKE5 535 aa13.6□□□□□ -0.23
PTPRF-213ENST00000481019 ARL6IP4Q66PJ3 421 aaKnown RBP13.6□□□□□ -0.23
PTPRF-213ENST00000481019 HAUS3Q68CZ6 603 aa13.6□□□□□ -0.23
PTPRF-213ENST00000481019 PADI6Q6TGC4 694 aa13.6□□□□□ -0.23
PTPRF-213ENST00000481019 FOXD4L3Q6VB84 417 aaPredicted RBP13.6□□□□□ -0.23
PTPRF-213ENST00000481019 SP7Q8TDD2 431 aaPredicted RBP13.6□□□□□ -0.23
PTPRF-213ENST00000481019 PSPC1Q8WXF1 523 aaKnown RBP13.6□□□□□ -0.23
PTPRF-213ENST00000481019 CLIC6Q96NY7 704 aa13.6□□□□□ -0.23
PTPRF-213ENST00000481019 JPH2Q9BR39 696 aaPredicted RBP13.6□□□□□ -0.23
PTPRF-213ENST00000481019 POLR3FQ9H1D9 316 aaPredicted RBP13.6□□□□□ -0.23
PTPRF-213ENST00000481019 BHMT2Q9H2M3 363 aa13.6□□□□□ -0.23
PTPRF-213ENST00000481019 SLC28A3Q9HAS3 691 aa13.6□□□□□ -0.23
PTPRF-213ENST00000481019 RGS18Q9NS28 235 aa13.6□□□□□ -0.23
PTPRF-213ENST00000481019 TFIP11Q9UBB9 837 aaKnown RBP13.6□□□□□ -0.23
PTPRF-213ENST00000481019 FBXO2Q9UK22 296 aaPredicted RBP13.6□□□□□ -0.23
PTPRF-213ENST00000481019 TMEM265A0A087WTH1 108 aa13.59□□□□□ -0.23
PTPRF-213ENST00000481019 ARHGEF35A5YM69 484 aa13.59□□□□□ -0.23
PTPRF-213ENST00000481019 C9IYK1 514 aa13.59□□□□□ -0.23
PTPRF-213ENST00000481019 F13A1P00488 732 aa13.59□□□□□ -0.23
PTPRF-213ENST00000481019 LINC00271P0C7V0 271 aa13.59□□□□□ -0.23
PTPRF-213ENST00000481019 TMEM119Q4V9L6 283 aa13.59□□□□□ -0.23
PTPRF-213ENST00000481019 HYIQ5T013 277 aa13.59□□□□□ -0.23
PTPRF-213ENST00000481019 ZNF410Q86VK4 478 aa13.59□□□□□ -0.23
PTPRF-213ENST00000481019 RNF149Q8NC42 400 aa13.59□□□□□ -0.23
PTPRF-213ENST00000481019 ZNF689Q96CS4 500 aaPredicted RBP13.59□□□□□ -0.23
PTPRF-213ENST00000481019 RUSC1Q9BVN2 902 aa13.59□□□□□ -0.23
PTPRF-213ENST00000481019 FTHL17Q9BXU8 183 aa13.59□□□□□ -0.23
PTPRF-213ENST00000481019 GCOM2Q9BZD3 368 aaPredicted RBP13.59□□□□□ -0.23
PTPRF-213ENST00000481019 CSRNP2Q9H175 543 aa13.59□□□□□ -0.23
PTPRF-213ENST00000481019 RNF19AQ9NV58 838 aa13.59□□□□□ -0.23
PTPRF-213ENST00000481019 DGKIO75912 1065 aa13.58□□□□□ -0.24
PTPRF-213ENST00000481019 EYA4O95677 639 aa13.58□□□□□ -0.24
PTPRF-213ENST00000481019 CYP11B2P19099 503 aa13.58□□□□□ -0.24
PTPRF-213ENST00000481019 MUTP22033 750 aa13.58□□□□□ -0.24
PTPRF-213ENST00000481019 SARSP49591 514 aaKnown RBP13.58□□□□□ -0.24
PTPRF-213ENST00000481019 FAM189BP81408 668 aa13.58□□□□□ -0.24
PTPRF-213ENST00000481019 FAM102BQ5T8I3 360 aa13.58□□□□□ -0.24
PTPRF-213ENST00000481019 CABP7Q86V35 215 aa13.58□□□□□ -0.24
PTPRF-213ENST00000481019 DAW1Q8N136 415 aa13.58□□□□□ -0.24
PTPRF-213ENST00000481019 TCP11Q8WWU5 503 aa13.58□□□□□ -0.24
PTPRF-213ENST00000481019 EPSTI1Q96J88 318 aa13.58□□□□□ -0.24
PTPRF-213ENST00000481019 C17orf80Q9BSJ5 609 aa13.58□□□□□ -0.24
PTPRF-213ENST00000481019 RAB34Q9BZG1 259 aa13.58□□□□□ -0.24
PTPRF-213ENST00000481019 HCSTQ9UBK5 93 aa13.58□□□□□ -0.24
PTPRF-213ENST00000481019 CFAP45Q9UL16 551 aa13.58□□□□□ -0.24
PTPRF-213ENST00000481019 MTUS1Q9ULD2 1270 aa13.58□□□□□ -0.24
PTPRF-213ENST00000481019 COL4A4P53420 1690 aaPredicted RBP13.58□□□□□ -0.24
PTPRF-213ENST00000481019 MYO9BQ13459 2157 aa13.58□□□□□ -0.24
PTPRF-213ENST00000481019 NPHP3-ACAD11A0A0J9YXS1 232 aa13.57□□□□□ -0.24
PTPRF-213ENST00000481019 DENND3A2RUS2 1198 aa13.57□□□□□ -0.24
PTPRF-213ENST00000481019 TTLL13PA6NNM8 815 aa13.57□□□□□ -0.24
PTPRF-213ENST00000481019 GAS2O43903 313 aaKnown RBP13.57□□□□□ -0.24
PTPRF-213ENST00000481019 BMP15O95972 392 aa13.57□□□□□ -0.24
PTPRF-213ENST00000481019 EDN1P05305 212 aa13.57□□□□□ -0.24
PTPRF-213ENST00000481019 FGFR1P11362 822 aa13.57□□□□□ -0.24
PTPRF-213ENST00000481019 ATF7P17544 494 aaPredicted RBP13.57□□□□□ -0.24
PTPRF-213ENST00000481019 HOXA11P31270 313 aaPredicted RBP13.57□□□□□ -0.24
PTPRF-213ENST00000481019 NASPP49321 788 aaPredicted RBP13.57□□□□□ -0.24
PTPRF-213ENST00000481019 PTENP60484 403 aa13.57□□□□□ -0.24
PTPRF-213ENST00000481019 MBTD1Q05BQ5 628 aa13.57□□□□□ -0.24
PTPRF-213ENST00000481019 SLC39A14Q15043 492 aa13.57□□□□□ -0.24
PTPRF-213ENST00000481019 KARSQ15046 597 aaKnown RBP13.57□□□□□ -0.24
PTPRF-213ENST00000481019 AMHR2Q16671 573 aa13.57□□□□□ -0.24
PTPRF-213ENST00000481019 NPAS4Q8IUM7 802 aa13.57□□□□□ -0.24
PTPRF-213ENST00000481019 EXOC8Q8IYI6 725 aa13.57□□□□□ -0.24
PTPRF-213ENST00000481019 ZNF710Q8N1W2 664 aa13.57□□□□□ -0.24
PTPRF-213ENST00000481019 ARNTL2Q8WYA1 636 aa13.57□□□□□ -0.24
PTPRF-213ENST00000481019 CCDC43Q96MW1 224 aaKnown RBP13.57□□□□□ -0.24
PTPRF-213ENST00000481019 ZNF396Q96N95 335 aaPredicted RBP13.57□□□□□ -0.24
PTPRF-213ENST00000481019 YME1L1Q96TA2 773 aa13.57□□□□□ -0.24
PTPRF-213ENST00000481019 KIFC3Q9BVG8 833 aa13.57□□□□□ -0.24
PTPRF-213ENST00000481019 BLOC1S4Q9NUP1 217 aa13.57□□□□□ -0.24
PTPRF-213ENST00000481019 DNM3Q9UQ16 869 aa13.57□□□□□ -0.24
PTPRF-213ENST00000481019 USP20Q9Y2K6 914 aa13.57□□□□□ -0.24
PTPRF-213ENST00000481019 INSL6Q9Y581 213 aa13.57□□□□□ -0.24
PTPRF-213ENST00000481019 SRPRBQ9Y5M8 271 aaKnown RBP13.57□□□□□ -0.24
PTPRF-213ENST00000481019 ADGRA3Q8IWK6 1321 aa13.57□□□□□ -0.24
PTPRF-213ENST00000481019 KIAA1671Q9BY89 1806 aa13.57□□□□□ -0.24
PTPRF-213ENST00000481019 A0A087X0B3 334 aa13.56□□□□□ -0.24
PTPRF-213ENST00000481019 MEIS3P2A8K0S8 358 aa13.56□□□□□ -0.24
PTPRF-213ENST00000481019 ASAP2O43150 1006 aa13.56□□□□□ -0.24
PTPRF-213ENST00000481019 B4GALT5O43286 388 aa13.56□□□□□ -0.24
PTPRF-213ENST00000481019 LPXNO60711 386 aa13.56□□□□□ -0.24
PTPRF-213ENST00000481019 NCLP19338 710 aaKnown RBP13.56□□□□□ -0.24
PTPRF-213ENST00000481019 LONP1P36776 959 aaKnown RBP13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms