RNA–Protein interactions for RNA: ENST00000479532.1

SF3B1-209, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 587 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-209ENST00000479532 ORC3Q9UBD5 711 aaPredicted RBP7.05□□□□□ -1.28
SF3B1-209ENST00000479532 ADD3Q9UEY8 706 aaKnown RBP7.05□□□□□ -1.28
SF3B1-209ENST00000479532 SMC3Q9UQE7 1217 aa7.05□□□□□ -1.28
SF3B1-209ENST00000479532 TRIM17Q9Y577 477 aa7.05□□□□□ -1.28
SF3B1-209ENST00000479532 CASP8AP2Q9UKL3 1982 aa7.05□□□□□ -1.28
SF3B1-209ENST00000479532 ZNFX1Q9P2E3 1918 aaKnown RBP7.05□□□□□ -1.28
SF3B1-209ENST00000479532 BAZ2BQ9UIF8 2168 aaKnown RBP7.05□□□□□ -1.28
SF3B1-209ENST00000479532 PLXNA1Q9UIW2 1896 aa7.04□□□□□ -1.28
SF3B1-209ENST00000479532 hCG_1642624A0A1W2PR95 340 aa7.04□□□□□ -1.28
SF3B1-209ENST00000479532 GCOM1H8Y6P7 765 aaPredicted RBP7.04□□□□□ -1.28
SF3B1-209ENST00000479532 CFBP00751 764 aa7.04□□□□□ -1.28
SF3B1-209ENST00000479532 POLR2MP0CAP2 368 aa7.04□□□□□ -1.28
SF3B1-209ENST00000479532 PTMSP20962 102 aa7.04□□□□□ -1.28
SF3B1-209ENST00000479532 CALML3P27482 149 aa7.04□□□□□ -1.28
SF3B1-209ENST00000479532 ADORA2AP29274 412 aa7.04□□□□□ -1.28
SF3B1-209ENST00000479532 MRE11P49959 708 aa7.04□□□□□ -1.28
SF3B1-209ENST00000479532 ADCY7P51828 1080 aa7.04□□□□□ -1.28
SF3B1-209ENST00000479532 NLRP5P59047 1200 aa7.04□□□□□ -1.28
SF3B1-209ENST00000479532 RAD51AP2Q09MP3 1159 aa7.04□□□□□ -1.28
SF3B1-209ENST00000479532 HYAL2Q12891 473 aa7.04□□□□□ -1.28
SF3B1-209ENST00000479532 GRB14Q14449 540 aa7.04□□□□□ -1.28
SF3B1-209ENST00000479532 HS1BP3Q53T59 392 aa7.04□□□□□ -1.28
SF3B1-209ENST00000479532 MEI1Q5TIA1 1274 aa7.04□□□□□ -1.28
SF3B1-209ENST00000479532 GALNT17Q6IS24 598 aa7.04□□□□□ -1.28
SF3B1-209ENST00000479532 PDZRN4Q6ZMN7 1036 aaPredicted RBP7.04□□□□□ -1.28
SF3B1-209ENST00000479532 CTU1Q7Z7A3 348 aaKnown RBP7.04□□□□□ -1.28
SF3B1-209ENST00000479532 NSUN7Q8NE18 718 aaKnown RBP7.04□□□□□ -1.28
SF3B1-209ENST00000479532 TRIM44Q96DX7 344 aaPredicted RBP7.04□□□□□ -1.28
SF3B1-209ENST00000479532 NSUN5Q96P11 429 aaKnown RBP7.04□□□□□ -1.28
SF3B1-209ENST00000479532 APBA2Q99767 749 aa7.04□□□□□ -1.28
SF3B1-209ENST00000479532 ALG1Q9BT22 464 aa7.04□□□□□ -1.28
SF3B1-209ENST00000479532 IGFLR1Q9H665 355 aa7.04□□□□□ -1.28
SF3B1-209ENST00000479532 PSTPIP2Q9H939 334 aa7.04□□□□□ -1.28
SF3B1-209ENST00000479532 SRRDQ9UH36 339 aa7.04□□□□□ -1.28
SF3B1-209ENST00000479532 DIS3Q9Y2L1 958 aaKnown RBP7.04□□□□□ -1.28
SF3B1-209ENST00000479532 RIPK3Q9Y572 518 aa7.04□□□□□ -1.28
SF3B1-209ENST00000479532 LOC102724159A0A0B4J2E5 919 aa7.03□□□□□ -1.28
SF3B1-209ENST00000479532 A0A0U1RQG5 324 aaPredicted RBP7.03□□□□□ -1.28
SF3B1-209ENST00000479532 ESYT2A0FGR8 921 aa7.03□□□□□ -1.28
SF3B1-209ENST00000479532 SMCO2A6NFE2 343 aa7.03□□□□□ -1.28
SF3B1-209ENST00000479532 STXBP3O00186 592 aa7.03□□□□□ -1.28
SF3B1-209ENST00000479532 NFIBO00712 420 aa7.03□□□□□ -1.28
SF3B1-209ENST00000479532 PEX10O60683 326 aa7.03□□□□□ -1.28
SF3B1-209ENST00000479532 LETM1O95202 739 aaPredicted RBP7.03□□□□□ -1.28
SF3B1-209ENST00000479532 KIF4AO95239 1232 aa7.03□□□□□ -1.28
SF3B1-209ENST00000479532 XRCC5P13010 732 aaKnown RBP7.03□□□□□ -1.28
SF3B1-209ENST00000479532 HOXD8P13378 290 aaPredicted RBP7.03□□□□□ -1.28
SF3B1-209ENST00000479532 ACPPP15309 386 aa7.03□□□□□ -1.28
SF3B1-209ENST00000479532 NOS3P29474 1203 aa7.03□□□□□ -1.28
SF3B1-209ENST00000479532 FLT3LGP49771 235 aa7.03□□□□□ -1.28
SF3B1-209ENST00000479532 PRKCZQ05513 592 aa7.03□□□□□ -1.28
SF3B1-209ENST00000479532 DMTNQ08495 405 aa7.03□□□□□ -1.28
SF3B1-209ENST00000479532 GNL2Q13823 731 aaKnown RBP7.03□□□□□ -1.28
SF3B1-209ENST00000479532 PWP2Q15269 919 aaKnown RBP7.03□□□□□ -1.28
SF3B1-209ENST00000479532 SAFBQ15424 915 aaKnown RBP eCLIP7.03□□□□□ -1.28
SF3B1-209ENST00000479532 SLC35G1Q2M3R5 365 aa7.03□□□□□ -1.28
SF3B1-209ENST00000479532 MUM1L1Q5H9M0 696 aa7.03□□□□□ -1.28
SF3B1-209ENST00000479532 WWC2Q6AWC2 1192 aa7.03□□□□□ -1.28
SF3B1-209ENST00000479532 OTOP1Q7RTM1 612 aa7.03□□□□□ -1.28
SF3B1-209ENST00000479532 MSL3Q8N5Y2 521 aaKnown RBP7.03□□□□□ -1.28
SF3B1-209ENST00000479532 GLIS3Q8NEA6 775 aa7.03□□□□□ -1.28
SF3B1-209ENST00000479532 DNERQ8NFT8 737 aa7.03□□□□□ -1.28
SF3B1-209ENST00000479532 CLEC4DQ8WXI8 215 aa7.03□□□□□ -1.28
SF3B1-209ENST00000479532 INTS4Q96HW7 963 aaKnown RBP7.03□□□□□ -1.28
SF3B1-209ENST00000479532 ARHGAP39Q9C0H5 1083 aa7.03□□□□□ -1.28
SF3B1-209ENST00000479532 RIC8AQ9NPQ8 531 aa7.03□□□□□ -1.28
SF3B1-209ENST00000479532 A1CFQ9NQ94 594 aaKnown RBP7.03□□□□□ -1.28
SF3B1-209ENST00000479532 CYP39A1Q9NYL5 469 aa7.03□□□□□ -1.28
SF3B1-209ENST00000479532 ZSWIM8A7E2V4 1837 aa7.03□□□□□ -1.28
SF3B1-209ENST00000479532 ASB14A6NK59 587 aa7.02□□□□□ -1.29
SF3B1-209ENST00000479532 H3BQV1 296 aa7.02□□□□□ -1.29
SF3B1-209ENST00000479532 ADCY3O60266 1144 aa7.02□□□□□ -1.29
SF3B1-209ENST00000479532 PPP1R11O60927 126 aaPredicted RBP7.02□□□□□ -1.29
SF3B1-209ENST00000479532 CTDNEP1O95476 244 aa7.02□□□□□ -1.29
SF3B1-209ENST00000479532 FOSP01100 380 aaPredicted RBP7.02□□□□□ -1.29
SF3B1-209ENST00000479532 HOXC6P09630 235 aa7.02□□□□□ -1.29
SF3B1-209ENST00000479532 CYP2B6P20813 491 aa7.02□□□□□ -1.29
SF3B1-209ENST00000479532 PDCP20941 246 aa7.02□□□□□ -1.29
SF3B1-209ENST00000479532 GJB2P29033 226 aa7.02□□□□□ -1.29
SF3B1-209ENST00000479532 GSTT1P30711 240 aa7.02□□□□□ -1.29
SF3B1-209ENST00000479532 HSD17B4P51659 736 aa7.02□□□□□ -1.29
SF3B1-209ENST00000479532 NRLP54845 237 aa7.02□□□□□ -1.29
SF3B1-209ENST00000479532 RPS6P62753 249 aaKnown RBP7.02□□□□□ -1.29
SF3B1-209ENST00000479532 UBXN2AP68543 259 aa7.02□□□□□ -1.29
SF3B1-209ENST00000479532 MLLT1Q03111 559 aaPredicted RBP7.02□□□□□ -1.29
SF3B1-209ENST00000479532 AP3B2Q13367 1082 aa7.02□□□□□ -1.29
SF3B1-209ENST00000479532 CUL4AQ13619 759 aa7.02□□□□□ -1.29
SF3B1-209ENST00000479532 BAATQ14032 418 aaPredicted RBP7.02□□□□□ -1.29
SF3B1-209ENST00000479532 PKN1Q16512 942 aa7.02□□□□□ -1.29
SF3B1-209ENST00000479532 ARHGEF16Q5VV41 709 aa7.02□□□□□ -1.29
SF3B1-209ENST00000479532 MFSD14CQ5VZR4 134 aa7.02□□□□□ -1.29
SF3B1-209ENST00000479532 OLFML2BQ68BL8 750 aa7.02□□□□□ -1.29
SF3B1-209ENST00000479532 FBXO46Q6PJ61 603 aaPredicted RBP7.02□□□□□ -1.29
SF3B1-209ENST00000479532 SLC30A10Q6XR72 485 aa7.02□□□□□ -1.29
SF3B1-209ENST00000479532 NSUN6Q8TEA1 469 aaKnown RBP7.02□□□□□ -1.29
SF3B1-209ENST00000479532 C8orf76Q96K31 380 aa7.02□□□□□ -1.29
SF3B1-209ENST00000479532 OSMRQ99650 979 aa7.02□□□□□ -1.29
SF3B1-209ENST00000479532 ZMYND12Q9H0C1 365 aa7.02□□□□□ -1.29
SF3B1-209ENST00000479532 LIN7BQ9HAP6 207 aa7.02□□□□□ -1.29
SF3B1-209ENST00000479532 VPS54Q9P1Q0 977 aa7.02□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms