RNA–Protein interactions for RNA: ENST00000475580.5

VPS8-222, Transcript of VPS8, CORVET complex subunit, human

TSL 2

Gene VPS8, Length 318 nt, Biotype processed transcript.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS8-222	ENST00000475580		H3BNC9	293 aa		18.44	■□□□□ 0.54
VPS8-222	ENST00000475580	LAD1	O00515	517 aa		18.44	■□□□□ 0.54
VPS8-222	ENST00000475580	SFPQ	P23246	707 aa	Known RBP eCLIP	18.44	■□□□□ 0.54
VPS8-222	ENST00000475580	BMPR1A	P36894	532 aa		18.44	■□□□□ 0.54
VPS8-222	ENST00000475580	PRPH	P41219	470 aa		18.44	■□□□□ 0.54
VPS8-222	ENST00000475580	ATP2C1	P98194	919 aa	Predicted RBP	18.44	■□□□□ 0.54
VPS8-222	ENST00000475580	PDIA5	Q14554	519 aa		18.44	■□□□□ 0.54
VPS8-222	ENST00000475580	PAN2	Q504Q3	1202 aa	Known RBP	18.44	■□□□□ 0.54
VPS8-222	ENST00000475580	FAM102B	Q5T8I3	360 aa		18.44	■□□□□ 0.54
VPS8-222	ENST00000475580	MICALL1	Q8N3F8	863 aa		18.44	■□□□□ 0.54
VPS8-222	ENST00000475580	ASAP3	Q8TDY4	903 aa		18.44	■□□□□ 0.54
VPS8-222	ENST00000475580	LMCD1	Q9NZU5	365 aa		18.44	■□□□□ 0.54
VPS8-222	ENST00000475580	LRWD1	Q9UFC0	647 aa		18.44	■□□□□ 0.54
VPS8-222	ENST00000475580	DBR1	Q9UK59	544 aa	Known RBP	18.44	■□□□□ 0.54
VPS8-222	ENST00000475580	ATG2A	Q2TAZ0	1938 aa		18.44	■□□□□ 0.54
VPS8-222	ENST00000475580	PRUNE2	Q8WUY3	3088 aa		18.43	■□□□□ 0.54
VPS8-222	ENST00000475580	PP2D1	A8MPX8	630 aa		18.43	■□□□□ 0.54
VPS8-222	ENST00000475580	ASAP2	O43150	1006 aa		18.43	■□□□□ 0.54
VPS8-222	ENST00000475580	SRGAP2C	P0DJJ0	459 aa		18.43	■□□□□ 0.54
VPS8-222	ENST00000475580	FGFR1	P11362	822 aa		18.43	■□□□□ 0.54
VPS8-222	ENST00000475580	ZSCAN20	P17040	1043 aa	Predicted RBP	18.43	■□□□□ 0.54
VPS8-222	ENST00000475580	ATF7	P17544	494 aa	Predicted RBP	18.43	■□□□□ 0.54
VPS8-222	ENST00000475580	MUT	P22033	750 aa		18.43	■□□□□ 0.54
VPS8-222	ENST00000475580	CTNNB1	P35222	781 aa		18.43	■□□□□ 0.54
VPS8-222	ENST00000475580	ARL2	P36404	184 aa		18.43	■□□□□ 0.54
VPS8-222	ENST00000475580	GPM6B	Q13491	265 aa		18.43	■□□□□ 0.54
VPS8-222	ENST00000475580	HAUS3	Q68CZ6	603 aa		18.43	■□□□□ 0.54
VPS8-222	ENST00000475580	ZNF598	Q86UK7	904 aa	Known RBP	18.43	■□□□□ 0.54
VPS8-222	ENST00000475580	ECHDC2	Q86YB7	292 aa		18.43	■□□□□ 0.54
VPS8-222	ENST00000475580	NACC1	Q96RE7	527 aa		18.43	■□□□□ 0.54
VPS8-222	ENST00000475580	INO80B	Q9C086	356 aa	Predicted RBP	18.43	■□□□□ 0.54
VPS8-222	ENST00000475580	CHST12	Q9NRB3	414 aa		18.43	■□□□□ 0.54
VPS8-222	ENST00000475580		A0A0U1RQF3	1178 aa		18.42	■□□□□ 0.54
VPS8-222	ENST00000475580		K7ELQ4	463 aa	Predicted RBP	18.42	■□□□□ 0.54
VPS8-222	ENST00000475580	USO1	O60763	962 aa	Known RBP	18.42	■□□□□ 0.54
VPS8-222	ENST00000475580	CCT6A	P40227	531 aa	Known RBP	18.42	■□□□□ 0.54
VPS8-222	ENST00000475580	CAPS	Q13938	189 aa		18.42	■□□□□ 0.54
VPS8-222	ENST00000475580	SRGAP1	Q7Z6B7	1085 aa		18.42	■□□□□ 0.54
VPS8-222	ENST00000475580	RNF149	Q8NC42	400 aa		18.42	■□□□□ 0.54
VPS8-222	ENST00000475580	INTS4	Q96HW7	963 aa	Known RBP	18.42	■□□□□ 0.54
VPS8-222	ENST00000475580	TRAIP	Q9BWF2	469 aa		18.42	■□□□□ 0.54
VPS8-222	ENST00000475580	GPRC5C	Q9NQ84	441 aa		18.42	■□□□□ 0.54
VPS8-222	ENST00000475580	HCST	Q9UBK5	93 aa		18.42	■□□□□ 0.54
VPS8-222	ENST00000475580	RWDD3	Q9Y3V2	267 aa		18.42	■□□□□ 0.54
VPS8-222	ENST00000475580	TBKBP1	A7MCY6	615 aa		18.41	■□□□□ 0.54
VPS8-222	ENST00000475580	RB1	P06400	928 aa		18.41	■□□□□ 0.54
VPS8-222	ENST00000475580	GLRA2	P23416	452 aa		18.41	■□□□□ 0.54
VPS8-222	ENST00000475580	PTEN	P60484	403 aa		18.41	■□□□□ 0.54
VPS8-222	ENST00000475580	MXD4	Q14582	209 aa	Predicted RBP	18.41	■□□□□ 0.54
VPS8-222	ENST00000475580	CATSPER4	Q7RTX7	472 aa		18.41	■□□□□ 0.54
VPS8-222	ENST00000475580	IFNLR1	Q8IU57	520 aa	Predicted RBP	18.41	■□□□□ 0.54
VPS8-222	ENST00000475580	SNX21	Q969T3	373 aa		18.41	■□□□□ 0.54
VPS8-222	ENST00000475580	CCDC43	Q96MW1	224 aa	Known RBP	18.41	■□□□□ 0.54
VPS8-222	ENST00000475580	MMTAG2	Q9BU76	263 aa	Known RBP	18.41	■□□□□ 0.54
VPS8-222	ENST00000475580	POLR3F	Q9H1D9	316 aa	Predicted RBP	18.41	■□□□□ 0.54
VPS8-222	ENST00000475580	AGPAT5	Q9NUQ2	364 aa		18.41	■□□□□ 0.54
VPS8-222	ENST00000475580	RNF216	Q9NWF9	866 aa	Predicted RBP	18.41	■□□□□ 0.54
VPS8-222	ENST00000475580	DACT1	Q9NYF0	836 aa		18.41	■□□□□ 0.54
VPS8-222	ENST00000475580	PIN4	Q9Y237	131 aa	Known RBP	18.41	■□□□□ 0.54
VPS8-222	ENST00000475580	REV3L	O60673	3130 aa		18.41	■□□□□ 0.54
VPS8-222	ENST00000475580	SPTBN5	Q9NRC6	3674 aa	Known RBP	18.41	■□□□□ 0.54
VPS8-222	ENST00000475580	CDC25A	P30304	524 aa		18.4	■□□□□ 0.54
VPS8-222	ENST00000475580	HOXA11	P31270	313 aa	Predicted RBP	18.4	■□□□□ 0.54
VPS8-222	ENST00000475580	POU5F1B	Q06416	359 aa		18.4	■□□□□ 0.54
VPS8-222	ENST00000475580	CLLU1OS	Q5K130	101 aa		18.4	■□□□□ 0.54
VPS8-222	ENST00000475580	DTHD1	Q6ZMT9	781 aa		18.4	■□□□□ 0.54
VPS8-222	ENST00000475580	SNX29	Q8TEQ0	813 aa		18.4	■□□□□ 0.54
VPS8-222	ENST00000475580	MRPL38	Q96DV4	380 aa	Known RBP	18.4	■□□□□ 0.54
VPS8-222	ENST00000475580	CASD1	Q96PB1	797 aa		18.4	■□□□□ 0.54
VPS8-222	ENST00000475580	PLVAP	Q9BX97	442 aa		18.4	■□□□□ 0.54
VPS8-222	ENST00000475580	RAB34	Q9BZG1	259 aa		18.4	■□□□□ 0.54
VPS8-222	ENST00000475580	TMEM117	Q9H0C3	514 aa		18.4	■□□□□ 0.54
VPS8-222	ENST00000475580	KIAA1024	Q9UPX6	916 aa		18.4	■□□□□ 0.54
VPS8-222	ENST00000475580	VPS37C	A5D8V6	355 aa	Predicted RBP	18.39	■□□□□ 0.53
VPS8-222	ENST00000475580	GRM6	O15303	877 aa		18.39	■□□□□ 0.53
VPS8-222	ENST00000475580	EOMES	O95936	686 aa		18.39	■□□□□ 0.53
VPS8-222	ENST00000475580	PDC	P20941	246 aa		18.39	■□□□□ 0.53
VPS8-222	ENST00000475580	SYT1	P21579	422 aa		18.39	■□□□□ 0.53
VPS8-222	ENST00000475580	PHKA2	P46019	1235 aa		18.39	■□□□□ 0.53
VPS8-222	ENST00000475580	MBTD1	Q05BQ5	628 aa		18.39	■□□□□ 0.53
VPS8-222	ENST00000475580	AMHR2	Q16671	573 aa		18.39	■□□□□ 0.53
VPS8-222	ENST00000475580	PADI6	Q6TGC4	694 aa		18.39	■□□□□ 0.53
VPS8-222	ENST00000475580	LRRC55	Q6ZSA7	311 aa		18.39	■□□□□ 0.53
VPS8-222	ENST00000475580	MAEA	Q7L5Y9	396 aa		18.39	■□□□□ 0.53
VPS8-222	ENST00000475580	BRAP	Q7Z569	592 aa		18.39	■□□□□ 0.53
VPS8-222	ENST00000475580	C11orf84	Q9BUA3	381 aa	Predicted RBP	18.39	■□□□□ 0.53
VPS8-222	ENST00000475580	CWH43	Q9H720	699 aa		18.39	■□□□□ 0.53
VPS8-222	ENST00000475580	FOXD4L1	Q9NU39	408 aa		18.39	■□□□□ 0.53
VPS8-222	ENST00000475580	DDX19A	Q9NUU7	478 aa	Known RBP	18.39	■□□□□ 0.53
VPS8-222	ENST00000475580	STK24	Q9Y6E0	443 aa		18.39	■□□□□ 0.53
VPS8-222	ENST00000475580	UNC80	Q8N2C7	3258 aa		18.39	■□□□□ 0.53
VPS8-222	ENST00000475580	ARHGEF35	A5YM69	484 aa		18.38	■□□□□ 0.53
VPS8-222	ENST00000475580	CYP11B2	P19099	503 aa		18.38	■□□□□ 0.53
VPS8-222	ENST00000475580	REST	Q13127	1097 aa		18.38	■□□□□ 0.53
VPS8-222	ENST00000475580	CAMK1	Q14012	370 aa		18.38	■□□□□ 0.53
VPS8-222	ENST00000475580	TFDP1	Q14186	410 aa		18.38	■□□□□ 0.53
VPS8-222	ENST00000475580	UBXN11	Q5T124	520 aa		18.38	■□□□□ 0.53
VPS8-222	ENST00000475580	ARL6IP4	Q66PJ3	421 aa	Known RBP	18.38	■□□□□ 0.53
VPS8-222	ENST00000475580	TWF2	Q6IBS0	349 aa	Known RBP	18.38	■□□□□ 0.53
VPS8-222	ENST00000475580	RNF169	Q8NCN4	708 aa		18.38	■□□□□ 0.53

Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms