RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 FGD2Q7Z6J4 655 aa6.06□□□□□ -1.44
CCDC88A-210ENST00000468534 FMNL3Q8IVF7 1028 aa6.06□□□□□ -1.44
CCDC88A-210ENST00000468534 C2orf69Q8N8R5 385 aa6.06□□□□□ -1.44
CCDC88A-210ENST00000468534 IGSF22Q8N9C0 903 aa6.06□□□□□ -1.44
CCDC88A-210ENST00000468534 CACTINQ8WUQ7 758 aaKnown RBP6.06□□□□□ -1.44
CCDC88A-210ENST00000468534 CHFRQ96EP1 664 aa6.06□□□□□ -1.44
CCDC88A-210ENST00000468534 SRPK1Q96SB4 655 aaKnown RBP6.06□□□□□ -1.44
CCDC88A-210ENST00000468534 NELFAQ9H3P2 528 aa6.06□□□□□ -1.44
CCDC88A-210ENST00000468534 AGO3Q9H9G7 860 aaKnown RBP6.06□□□□□ -1.44
CCDC88A-210ENST00000468534 GEMIN8Q9NWZ8 242 aaKnown RBP6.06□□□□□ -1.44
CCDC88A-210ENST00000468534 NRBP1Q9UHY1 535 aa6.06□□□□□ -1.44
CCDC88A-210ENST00000468534 B3GALT1Q9Y5Z6 326 aa6.06□□□□□ -1.44
CCDC88A-210ENST00000468534 GOLGA6L22H0YM25 854 aa6.05□□□□□ -1.44
CCDC88A-210ENST00000468534 ZRANB2O95218 330 aaKnown RBP eCLIP6.05□□□□□ -1.44
CCDC88A-210ENST00000468534 SDHAP31040 664 aa6.05□□□□□ -1.44
CCDC88A-210ENST00000468534 MAP3K12Q12852 859 aa6.05□□□□□ -1.44
CCDC88A-210ENST00000468534 CRHR2Q13324 411 aa6.05□□□□□ -1.44
CCDC88A-210ENST00000468534 RIN1Q13671 783 aa6.05□□□□□ -1.44
CCDC88A-210ENST00000468534 TUBA3CQ13748 450 aa6.05□□□□□ -1.44
CCDC88A-210ENST00000468534 CCDC96Q2M329 555 aa6.05□□□□□ -1.44
CCDC88A-210ENST00000468534 TMEM177Q53S58 311 aa6.05□□□□□ -1.44
CCDC88A-210ENST00000468534 ABHD17CQ6PCB6 329 aa6.05□□□□□ -1.44
CCDC88A-210ENST00000468534 TUBA3EQ6PEY2 450 aa6.05□□□□□ -1.44
CCDC88A-210ENST00000468534 PMFBP1Q8TBY8 1022 aa6.05□□□□□ -1.44
CCDC88A-210ENST00000468534 DLG3Q92796 817 aa6.05□□□□□ -1.44
CCDC88A-210ENST00000468534 A0A1W2PRX2 142 aa6.04□□□□□ -1.44
CCDC88A-210ENST00000468534 TCRBV16S1A1N1A0A5B0 115 aa6.04□□□□□ -1.44
CCDC88A-210ENST00000468534 TTC36A6NLP5 189 aa6.04□□□□□ -1.44
CCDC88A-210ENST00000468534 ATP2C1P98194 919 aaPredicted RBP6.04□□□□□ -1.44
CCDC88A-210ENST00000468534 SAFB2Q14151 953 aaKnown RBP eCLIP6.04□□□□□ -1.44
CCDC88A-210ENST00000468534 TRIM61Q5EBN2 209 aa6.04□□□□□ -1.44
CCDC88A-210ENST00000468534 ZC3H12BQ5HYM0 836 aaKnown RBP6.04□□□□□ -1.44
CCDC88A-210ENST00000468534 ZNF622Q969S3 477 aaKnown RBP eCLIP6.04□□□□□ -1.445e-14■■■□□ 14.8
CCDC88A-210ENST00000468534 MMRN2Q9H8L6 949 aa6.04□□□□□ -1.44
CCDC88A-210ENST00000468534 MSL2Q9HCI7 577 aa6.04□□□□□ -1.44
CCDC88A-210ENST00000468534 HECAQ9UBI9 543 aaPredicted RBP6.04□□□□□ -1.44
CCDC88A-210ENST00000468534 GIT1Q9Y2X7 761 aa6.04□□□□□ -1.44
CCDC88A-210ENST00000468534 REXO2Q9Y3B8 237 aaKnown RBP6.04□□□□□ -1.44
CCDC88A-210ENST00000468534 WDR33Q9C0J8 1336 aaKnown RBP6.03□□□□□ -1.44
CCDC88A-210ENST00000468534 CLGNO14967 610 aa6.03□□□□□ -1.44
CCDC88A-210ENST00000468534 HSP90AA1P07900 732 aaKnown RBP6.03□□□□□ -1.44
CCDC88A-210ENST00000468534 VIL1P09327 827 aaKnown RBP6.03□□□□□ -1.44
CCDC88A-210ENST00000468534 KCNA6P17658 529 aa6.03□□□□□ -1.44
CCDC88A-210ENST00000468534 DEKP35659 375 aaKnown RBP6.03□□□□□ -1.44
CCDC88A-210ENST00000468534 ALDH6A1Q02252 535 aaKnown RBP6.03□□□□□ -1.44
CCDC88A-210ENST00000468534 UBE4AQ14139 1066 aa6.03□□□□□ -1.44
CCDC88A-210ENST00000468534 CASC1Q6TDU7 716 aa6.03□□□□□ -1.44
CCDC88A-210ENST00000468534 ADGRE4PQ86SQ3 457 aa6.03□□□□□ -1.44
CCDC88A-210ENST00000468534 BCL6BQ8N143 479 aaPredicted RBP6.03□□□□□ -1.44
CCDC88A-210ENST00000468534 IL17RAQ96F46 866 aa6.03□□□□□ -1.44
CCDC88A-210ENST00000468534 OSBPL2Q9H1P3 480 aa6.03□□□□□ -1.44
CCDC88A-210ENST00000468534 IKZF4Q9H2S9 585 aa6.03□□□□□ -1.44
CCDC88A-210ENST00000468534 MAP3K20Q9NYL2 800 aaKnown RBP6.03□□□□□ -1.44
CCDC88A-210ENST00000468534 C11orf21Q9P2W6 132 aa6.03□□□□□ -1.44
CCDC88A-210ENST00000468534 MRPL42Q9Y6G3 142 aaKnown RBP6.03□□□□□ -1.44
CCDC88A-210ENST00000468534 ADH4P08319 380 aa6.02□□□□□ -1.45
CCDC88A-210ENST00000468534 RGS3P49796 1198 aa6.02□□□□□ -1.45
CCDC88A-210ENST00000468534 POU5F1Q01860 360 aaKnown RBP6.02□□□□□ -1.45
CCDC88A-210ENST00000468534 LMOD3Q0VAK6 560 aa6.02□□□□□ -1.45
CCDC88A-210ENST00000468534 SOGA3Q5TF21 947 aa6.02□□□□□ -1.45
CCDC88A-210ENST00000468534 FNDC7Q5VTL7 733 aa6.02□□□□□ -1.45
CCDC88A-210ENST00000468534 KLHDC10Q6PID8 442 aa6.02□□□□□ -1.45
CCDC88A-210ENST00000468534 RTN4RL1Q86UN2 441 aaPredicted RBP6.02□□□□□ -1.45
CCDC88A-210ENST00000468534 THEMISQ8N1K5 641 aaPredicted RBP6.02□□□□□ -1.45
CCDC88A-210ENST00000468534 ZSWIM2Q8NEG5 633 aa6.02□□□□□ -1.45
CCDC88A-210ENST00000468534 ZNF483Q8TF39 744 aaPredicted RBP6.02□□□□□ -1.45
CCDC88A-210ENST00000468534 JDP2Q8WYK2 163 aa6.02□□□□□ -1.45
CCDC88A-210ENST00000468534 RPL10LQ96L21 214 aaKnown RBP6.02□□□□□ -1.45
CCDC88A-210ENST00000468534 C8orf48Q96LL4 319 aa6.02□□□□□ -1.45
CCDC88A-210ENST00000468534 TMX4Q9H1E5 349 aaPredicted RBP6.02□□□□□ -1.45
CCDC88A-210ENST00000468534 SAE1Q9UBE0 346 aaPredicted RBP6.02□□□□□ -1.45
CCDC88A-210ENST00000468534 CTDP1Q9Y5B0 961 aaPredicted RBP6.02□□□□□ -1.45
CCDC88A-210ENST00000468534 RBM8AQ9Y5S9 174 aaKnown RBP6.02□□□□□ -1.45
CCDC88A-210ENST00000468534 RPGRIP1LQ68CZ1 1315 aa6.01□□□□□ -1.45
CCDC88A-210ENST00000468534 M0R2C6 588 aa6.01□□□□□ -1.45
CCDC88A-210ENST00000468534 CYP27B1O15528 508 aa6.01□□□□□ -1.45
CCDC88A-210ENST00000468534 DNAJC6O75061 913 aa6.01□□□□□ -1.45
CCDC88A-210ENST00000468534 ZBTB48P10074 688 aaPredicted RBP6.01□□□□□ -1.45
CCDC88A-210ENST00000468534 KIF11P52732 1056 aa6.01□□□□□ -1.45
CCDC88A-210ENST00000468534 SLC6A3Q01959 620 aa6.01□□□□□ -1.45
CCDC88A-210ENST00000468534 DHX8Q14562 1220 aaKnown RBP6.01□□□□□ -1.45
CCDC88A-210ENST00000468534 RRP1BQ14684 758 aaKnown RBP6.01□□□□□ -1.45
CCDC88A-210ENST00000468534 ZKSCAN2Q63HK3 967 aa6.01□□□□□ -1.45
CCDC88A-210ENST00000468534 ABCF1Q8NE71 845 aaKnown RBP eCLIP6.01□□□□□ -1.45
CCDC88A-210ENST00000468534 GCDHQ92947 438 aaPredicted RBP6.01□□□□□ -1.45
CCDC88A-210ENST00000468534 FOXRED1Q96CU9 486 aaPredicted RBP6.01□□□□□ -1.45
CCDC88A-210ENST00000468534 CLIP3Q96DZ5 547 aa6.01□□□□□ -1.45
CCDC88A-210ENST00000468534 TSPAN18Q96SJ8 248 aa6.01□□□□□ -1.45
CCDC88A-210ENST00000468534 CEP89Q96ST8 783 aa6.01□□□□□ -1.45
CCDC88A-210ENST00000468534 FOXB1Q99853 325 aa6.01□□□□□ -1.45
CCDC88A-210ENST00000468534 BOCQ9BWV1 1114 aa6.01□□□□□ -1.45
CCDC88A-210ENST00000468534 MRPL4Q9BYD3 311 aaKnown RBP6.01□□□□□ -1.45
CCDC88A-210ENST00000468534 INO80BQ9C086 356 aaPredicted RBP6.01□□□□□ -1.45
CCDC88A-210ENST00000468534 SLC2A4RGQ9NR83 387 aa6.01□□□□□ -1.45
CCDC88A-210ENST00000468534 TCEAL9Q9UHQ7 104 aa6.01□□□□□ -1.45
CCDC88A-210ENST00000468534 SH3BP1Q9Y3L3 701 aa6.01□□□□□ -1.45
CCDC88A-210ENST00000468534 PTCH2Q9Y6C5 1203 aa6.01□□□□□ -1.45
CCDC88A-210ENST00000468534 SCINQ9Y6U3 715 aa6.01□□□□□ -1.45
CCDC88A-210ENST00000468534 GOLGA8BA8MQT2 603 aa6□□□□□ -1.45
CCDC88A-210ENST00000468534 ENPP3O14638 875 aa6□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms