RNA–Protein interactions for RNA: ENST00000466532.1

COL9A3-206, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 539 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-206ENST00000466532 PFKFB2O60825 505 aa21.5■■□□□ 1.03
COL9A3-206ENST00000466532 DTNBO60941 627 aa21.5■■□□□ 1.03
COL9A3-206ENST00000466532 MAFO75444 373 aaPredicted RBP21.5■■□□□ 1.03
COL9A3-206ENST00000466532 EOMESO95936 686 aa21.5■■□□□ 1.03
COL9A3-206ENST00000466532 PPM1AP35813 382 aa21.5■■□□□ 1.03
COL9A3-206ENST00000466532 PBX3P40426 434 aa21.5■■□□□ 1.03
COL9A3-206ENST00000466532 RBM10P98175 930 aaKnown RBP21.5■■□□□ 1.03
COL9A3-206ENST00000466532 PLA2G4FQ68DD2 849 aa21.5■■□□□ 1.03
COL9A3-206ENST00000466532 ANO5Q75V66 913 aa21.5■■□□□ 1.03
COL9A3-206ENST00000466532 ZNF598Q86UK7 904 aaKnown RBP21.5■■□□□ 1.03
COL9A3-206ENST00000466532 ENTPD7Q9NQZ7 604 aa21.5■■□□□ 1.03
COL9A3-206ENST00000466532 GJB4Q9NTQ9 266 aa21.5■■□□□ 1.03
COL9A3-206ENST00000466532 SUCLA2Q9P2R7 463 aaPredicted RBP21.5■■□□□ 1.03
COL9A3-206ENST00000466532 VAV3Q9UKW4 847 aa21.5■■□□□ 1.03
COL9A3-206ENST00000466532 TPCN1Q9ULQ1 816 aa21.5■■□□□ 1.03
COL9A3-206ENST00000466532 ATF7P17544 494 aaPredicted RBP21.49■■□□□ 1.03
COL9A3-206ENST00000466532 SFPQP23246 707 aaKnown RBP eCLIP21.49■■□□□ 1.03
COL9A3-206ENST00000466532 PPP2R5CQ13362 524 aa21.49■■□□□ 1.03
COL9A3-206ENST00000466532 ZNF410Q86VK4 478 aa21.49■■□□□ 1.03
COL9A3-206ENST00000466532 RHPN2Q8IUC4 686 aa21.49■■□□□ 1.03
COL9A3-206ENST00000466532 RNF135Q8IUD6 432 aa21.49■■□□□ 1.03
COL9A3-206ENST00000466532 VN1R2Q8NFZ6 395 aa21.49■■□□□ 1.03
COL9A3-206ENST00000466532 FAM20AQ96MK3 541 aa21.49■■□□□ 1.03
COL9A3-206ENST00000466532 TCF25Q9BQ70 676 aa21.49■■□□□ 1.03
COL9A3-206ENST00000466532 JPH2Q9BR39 696 aaPredicted RBP21.49■■□□□ 1.03
COL9A3-206ENST00000466532 INO80BQ9C086 356 aaPredicted RBP21.49■■□□□ 1.03
COL9A3-206ENST00000466532 KCNMB3Q9NPA1 279 aa21.49■■□□□ 1.03
COL9A3-206ENST00000466532 CHST12Q9NRB3 414 aa21.49■■□□□ 1.03
COL9A3-206ENST00000466532 MUTYHQ9UIF7 546 aa21.49■■□□□ 1.03
COL9A3-206ENST00000466532 USP15Q9Y4E8 981 aaPredicted RBP21.49■■□□□ 1.03
COL9A3-206ENST00000466532 CCNT1O60563 726 aaKnown RBP21.48■■□□□ 1.03
COL9A3-206ENST00000466532 GCFC2P16383 781 aaKnown RBP21.48■■□□□ 1.03
COL9A3-206ENST00000466532 QARSP47897 775 aaKnown RBP21.48■■□□□ 1.03
COL9A3-206ENST00000466532 KRT17Q04695 432 aa21.48■■□□□ 1.03
COL9A3-206ENST00000466532 PPP4R3AQ6IN85 833 aa21.48■■□□□ 1.03
COL9A3-206ENST00000466532 PIK3AP1Q6ZUJ8 805 aa21.48■■□□□ 1.03
COL9A3-206ENST00000466532 OXER1Q8TDS5 423 aa21.48■■□□□ 1.03
COL9A3-206ENST00000466532 MRPL9Q9BYD2 267 aaKnown RBP21.48■■□□□ 1.03
COL9A3-206ENST00000466532 SPG21Q9NZD8 308 aa21.48■■□□□ 1.03
COL9A3-206ENST00000466532 TRIOO75962 3097 aa21.47■■□□□ 1.03
COL9A3-206ENST00000466532 DKC1O60832 514 aaKnown RBP eCLIP21.47■■□□□ 1.03
COL9A3-206ENST00000466532 SRGAP2BP0DMP2 458 aa21.47■■□□□ 1.03
COL9A3-206ENST00000466532 PHKA2P46019 1235 aa21.47■■□□□ 1.03
COL9A3-206ENST00000466532 HERC4Q5GLZ8 1057 aaPredicted RBP21.47■■□□□ 1.03
COL9A3-206ENST00000466532 TWF2Q6IBS0 349 aaKnown RBP21.47■■□□□ 1.03
COL9A3-206ENST00000466532 KSR1Q8IVT5 923 aa21.47■■□□□ 1.03
COL9A3-206ENST00000466532 NLRP4Q96MN2 994 aa21.47■■□□□ 1.03
COL9A3-206ENST00000466532 NGRNQ9NPE2 291 aaKnown RBP21.47■■□□□ 1.03
COL9A3-206ENST00000466532 CYP26B1Q9NR63 512 aa21.47■■□□□ 1.03
COL9A3-206ENST00000466532 PIN4Q9Y237 131 aaKnown RBP21.47■■□□□ 1.03
COL9A3-206ENST00000466532 HIDE1A8MVS5 230 aa21.46■■□□□ 1.03
COL9A3-206ENST00000466532 MARCH6O60337 910 aa21.46■■□□□ 1.03
COL9A3-206ENST00000466532 CTDNEP1O95476 244 aa21.46■■□□□ 1.03
COL9A3-206ENST00000466532 AK2P54819 239 aa21.46■■□□□ 1.03
COL9A3-206ENST00000466532 NPEPPSP55786 919 aa21.46■■□□□ 1.03
COL9A3-206ENST00000466532 ANKRD1Q15327 319 aa21.46■■□□□ 1.03
COL9A3-206ENST00000466532 TMC7Q7Z402 723 aa21.46■■□□□ 1.03
COL9A3-206ENST00000466532 SLC39A11Q8N1S5 342 aa21.46■■□□□ 1.03
COL9A3-206ENST00000466532 NAP1L4Q99733 375 aaKnown RBP21.46■■□□□ 1.03
COL9A3-206ENST00000466532 ORC3Q9UBD5 711 aaPredicted RBP21.46■■□□□ 1.03
COL9A3-206ENST00000466532 TDRD15B5MCY1 1934 aaKnown RBP21.45■■□□□ 1.02
COL9A3-206ENST00000466532 LOC730098B7Z3J9 87 aa21.45■■□□□ 1.02
COL9A3-206ENST00000466532 TBX3O15119 743 aa21.45■■□□□ 1.02
COL9A3-206ENST00000466532 P4HBP07237 508 aaKnown RBP21.45■■□□□ 1.02
COL9A3-206ENST00000466532 SKIP12755 728 aa21.45■■□□□ 1.02
COL9A3-206ENST00000466532 ANAPC15P60006 121 aa21.45■■□□□ 1.02
COL9A3-206ENST00000466532 LLGL2Q6P1M3 1020 aa21.45■■□□□ 1.02
COL9A3-206ENST00000466532 CATSPER4Q7RTX7 472 aa21.45■■□□□ 1.02
COL9A3-206ENST00000466532 POTEDQ86YR6 584 aa21.45■■□□□ 1.02
COL9A3-206ENST00000466532 SLC7A3Q8WY07 619 aa21.45■■□□□ 1.02
COL9A3-206ENST00000466532 WASF1Q92558 559 aa21.45■■□□□ 1.02
COL9A3-206ENST00000466532 HAS1Q92839 578 aa21.45■■□□□ 1.02
COL9A3-206ENST00000466532 LPPQ93052 612 aa21.45■■□□□ 1.02
COL9A3-206ENST00000466532 CEP170P1Q96L14 293 aa21.45■■□□□ 1.02
COL9A3-206ENST00000466532 TRAIPQ9BWF2 469 aa21.45■■□□□ 1.02
COL9A3-206ENST00000466532 PHF7Q9BWX1 381 aaPredicted RBP21.45■■□□□ 1.02
COL9A3-206ENST00000466532 WRAP73Q9P2S5 460 aaPredicted RBP21.45■■□□□ 1.02
COL9A3-206ENST00000466532 COL4A3BPQ9Y5P4 624 aa21.45■■□□□ 1.02
COL9A3-206ENST00000466532 TECTAO75443 2155 aa21.44■■□□□ 1.02
COL9A3-206ENST00000466532 NT5C1B-RDH14C9J2C7 533 aa21.44■■□□□ 1.02
COL9A3-206ENST00000466532 TECP42680 631 aa21.44■■□□□ 1.02
COL9A3-206ENST00000466532 ALDH7A1P49419 539 aaKnown RBP21.44■■□□□ 1.02
COL9A3-206ENST00000466532 POLGP54098 1239 aaPredicted RBP21.44■■□□□ 1.02
COL9A3-206ENST00000466532 BCAR1P56945 870 aa21.44■■□□□ 1.02
COL9A3-206ENST00000466532 KCNC3Q14003 757 aa21.44■■□□□ 1.02
COL9A3-206ENST00000466532 SMC1AQ14683 1233 aaKnown RBP21.44■■□□□ 1.02
COL9A3-206ENST00000466532 EPHA7Q15375 998 aa21.44■■□□□ 1.02
COL9A3-206ENST00000466532 LONRF3Q496Y0 759 aa21.44■■□□□ 1.02
COL9A3-206ENST00000466532 EARS2Q5JPH6 523 aaKnown RBP21.44■■□□□ 1.02
COL9A3-206ENST00000466532 NCAPH2Q6IBW4 605 aa21.44■■□□□ 1.02
COL9A3-206ENST00000466532 ANKRD54Q6NXT1 300 aa21.44■■□□□ 1.02
COL9A3-206ENST00000466532 TMEM184AQ6ZMB5 413 aa21.44■■□□□ 1.02
COL9A3-206ENST00000466532 ZNF579Q8NAF0 562 aaKnown RBP21.44■■□□□ 1.02
COL9A3-206ENST00000466532 LXNQ9BS40 222 aa21.44■■□□□ 1.02
COL9A3-206ENST00000466532 FAM105AQ9NUU6 356 aa21.44■■□□□ 1.02
COL9A3-206ENST00000466532 FAM205CA6NFA0 338 aa21.43■■□□□ 1.02
COL9A3-206ENST00000466532 KRT2P35908 639 aa21.43■■□□□ 1.02
COL9A3-206ENST00000466532 C4orf19Q8IY42 314 aa21.43■■□□□ 1.02
COL9A3-206ENST00000466532 EXOC8Q8IYI6 725 aa21.43■■□□□ 1.02
COL9A3-206ENST00000466532 RSPH1Q8WYR4 309 aa21.43■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms