RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 CASKIN2Q8WXE0 1202 aa9.73□□□□□ -0.85
SYNE1-217ENST00000466159 CAVIN3Q969G5 261 aa9.73□□□□□ -0.85
SYNE1-217ENST00000466159 TAAR1Q96RJ0 339 aa9.73□□□□□ -0.85
SYNE1-217ENST00000466159 AP1M1Q9BXS5 423 aa9.73□□□□□ -0.85
SYNE1-217ENST00000466159 APEX2Q9UBZ4 518 aa9.73□□□□□ -0.85
SYNE1-217ENST00000466159 UBIAD1Q9Y5Z9 338 aa9.73□□□□□ -0.85
SYNE1-217ENST00000466159 LOXHD1Q8IVV2 1947 aa9.73□□□□□ -0.85
SYNE1-217ENST00000466159 EIF2AK2P19525 551 aaKnown RBP9.72□□□□□ -0.85
SYNE1-217ENST00000466159 ABCB4P21439 1286 aa9.72□□□□□ -0.85
SYNE1-217ENST00000466159 RARRES1P49788 294 aa9.72□□□□□ -0.85
SYNE1-217ENST00000466159 MTMR1Q13613 665 aa9.72□□□□□ -0.85
SYNE1-217ENST00000466159 SLFN11Q7Z7L1 901 aa9.72□□□□□ -0.85
SYNE1-217ENST00000466159 DAAM2Q86T65 1068 aa9.72□□□□□ -0.85
SYNE1-217ENST00000466159 SLC9A9Q8IVB4 645 aa9.72□□□□□ -0.85
SYNE1-217ENST00000466159 LMO3Q8TAP4 145 aa9.72□□□□□ -0.85
SYNE1-217ENST00000466159 NEK9Q8TD19 979 aa9.72□□□□□ -0.85
SYNE1-217ENST00000466159 CBWD1Q9BRT8 395 aa9.72□□□□□ -0.85
SYNE1-217ENST00000466159 SYT11Q9BT88 431 aa9.72□□□□□ -0.85
SYNE1-217ENST00000466159 MYOZ2Q9NPC6 264 aa9.72□□□□□ -0.85
SYNE1-217ENST00000466159 LARSQ9P2J5 1176 aaKnown RBP9.72□□□□□ -0.85
SYNE1-217ENST00000466159 RGPD3A6NKT7 1758 aaPredicted RBP9.72□□□□□ -0.85
SYNE1-217ENST00000466159 RGPD4Q7Z3J3 1758 aa9.72□□□□□ -0.85
SYNE1-217ENST00000466159 A0A0A6YYK5 440 aaPredicted RBP9.72□□□□□ -0.85
SYNE1-217ENST00000466159 GOLGA6CA6NDK9 693 aa9.72□□□□□ -0.85
SYNE1-217ENST00000466159 FOXN3O00409 490 aaPredicted RBP9.72□□□□□ -0.85
SYNE1-217ENST00000466159 CES2O00748 559 aa9.72□□□□□ -0.85
SYNE1-217ENST00000466159 WDR46O15213 610 aaKnown RBP9.72□□□□□ -0.85
SYNE1-217ENST00000466159 GOLGA6DP0CG33 693 aa9.72□□□□□ -0.85
SYNE1-217ENST00000466159 QARSP47897 775 aaKnown RBP9.72□□□□□ -0.85
SYNE1-217ENST00000466159 GUCY2FP51841 1108 aa9.72□□□□□ -0.85
SYNE1-217ENST00000466159 RPS6P62753 249 aaKnown RBP9.72□□□□□ -0.85
SYNE1-217ENST00000466159 TNIP1Q15025 636 aa9.72□□□□□ -0.85
SYNE1-217ENST00000466159 UGCGQ16739 394 aa9.72□□□□□ -0.85
SYNE1-217ENST00000466159 PCNX4Q63HM2 1172 aa9.72□□□□□ -0.85
SYNE1-217ENST00000466159 FOXR1Q6PIV2 292 aa9.72□□□□□ -0.85
SYNE1-217ENST00000466159 ILDR2Q71H61 639 aa9.72□□□□□ -0.85
SYNE1-217ENST00000466159 NT5DC3Q86UY8 548 aa9.72□□□□□ -0.85
SYNE1-217ENST00000466159 PALB2Q86YC2 1186 aa9.72□□□□□ -0.85
SYNE1-217ENST00000466159 MCF2L2Q86YR7 1114 aa9.72□□□□□ -0.85
SYNE1-217ENST00000466159 SLC35G2Q8TBE7 412 aa9.72□□□□□ -0.85
SYNE1-217ENST00000466159 SCFD2Q8WU76 684 aa9.72□□□□□ -0.85
SYNE1-217ENST00000466159 PBKQ96KB5 322 aa9.72□□□□□ -0.85
SYNE1-217ENST00000466159 SLC38A10Q9HBR0 1119 aa9.72□□□□□ -0.85
SYNE1-217ENST00000466159 GPRC5CQ9NQ84 441 aa9.72□□□□□ -0.85
SYNE1-217ENST00000466159 GOLGA6AQ9NYA3 693 aa9.72□□□□□ -0.85
SYNE1-217ENST00000466159 TAS2R14Q9NYV8 317 aa9.72□□□□□ -0.85
SYNE1-217ENST00000466159 INTUQ9ULD6 942 aa9.72□□□□□ -0.85
SYNE1-217ENST00000466159 STXBP5LQ9Y2K9 1186 aa9.72□□□□□ -0.85
SYNE1-217ENST00000466159 SRCAPQ6ZRS2 3230 aa9.72□□□□□ -0.85
SYNE1-217ENST00000466159 FER1L6Q2WGJ9 1857 aa9.72□□□□□ -0.85
SYNE1-217ENST00000466159 EMSYQ7Z589 1322 aa9.72□□□□□ -0.85
SYNE1-217ENST00000466159 IGSF9BQ9UPX0 1349 aa9.72□□□□□ -0.85
SYNE1-217ENST00000466159 ATP9AO75110 1047 aa9.71□□□□□ -0.85
SYNE1-217ENST00000466159 MYCLP12524 364 aaPredicted RBP9.71□□□□□ -0.85
SYNE1-217ENST00000466159 LMNB1P20700 586 aa9.71□□□□□ -0.85
SYNE1-217ENST00000466159 YWHABP31946 246 aaKnown RBP9.71□□□□□ -0.85
SYNE1-217ENST00000466159 TNNC1P63316 161 aa9.71□□□□□ -0.85
SYNE1-217ENST00000466159 PPP3CAQ08209 521 aa9.71□□□□□ -0.85
SYNE1-217ENST00000466159 PAK2Q13177 524 aa9.71□□□□□ -0.85
SYNE1-217ENST00000466159 LRRC31Q6UY01 552 aa9.71□□□□□ -0.85
SYNE1-217ENST00000466159 ACTRT1Q8TDG2 376 aa9.71□□□□□ -0.85
SYNE1-217ENST00000466159 LMBR1Q8WVP7 490 aa9.71□□□□□ -0.85
SYNE1-217ENST00000466159 ARL8AQ96BM9 186 aa9.71□□□□□ -0.85
SYNE1-217ENST00000466159 TEPSINQ96N21 525 aa9.71□□□□□ -0.85
SYNE1-217ENST00000466159 ZIM3Q96PE6 472 aa9.71□□□□□ -0.85
SYNE1-217ENST00000466159 TRERF1Q96PN7 1200 aa9.71□□□□□ -0.85
SYNE1-217ENST00000466159 SH3GL2Q99962 352 aa9.71□□□□□ -0.85
SYNE1-217ENST00000466159 SEPT11Q9NVA2 429 aaKnown RBP9.71□□□□□ -0.85
SYNE1-217ENST00000466159 NOC2LQ9Y3T9 749 aaKnown RBP9.71□□□□□ -0.85
SYNE1-217ENST00000466159 TULP1O00294 542 aaPredicted RBP9.71□□□□□ -0.86
SYNE1-217ENST00000466159 BUB1BO60566 1050 aaPredicted RBP9.71□□□□□ -0.86
SYNE1-217ENST00000466159 HSF2BPO75031 334 aa9.71□□□□□ -0.86
SYNE1-217ENST00000466159 KRT13P13646 458 aa9.71□□□□□ -0.86
SYNE1-217ENST00000466159 PLS3P13797 630 aa9.71□□□□□ -0.86
SYNE1-217ENST00000466159 GCLMP48507 274 aa9.71□□□□□ -0.86
SYNE1-217ENST00000466159 PGM5Q15124 567 aa9.71□□□□□ -0.86
SYNE1-217ENST00000466159 NIPA1Q7RTP0 329 aa9.71□□□□□ -0.86
SYNE1-217ENST00000466159 FAM76AQ8TAV0 307 aa9.71□□□□□ -0.86
SYNE1-217ENST00000466159 LPAR1Q92633 364 aa9.71□□□□□ -0.86
SYNE1-217ENST00000466159 CCDC43Q96MW1 224 aaKnown RBP9.71□□□□□ -0.86
SYNE1-217ENST00000466159 BUD13Q9BRD0 619 aaKnown RBP eCLIP9.71□□□□□ -0.86
SYNE1-217ENST00000466159 DDX47Q9H0S4 455 aaKnown RBP9.71□□□□□ -0.86
SYNE1-217ENST00000466159 TMEM206Q9H813 350 aa9.71□□□□□ -0.86
SYNE1-217ENST00000466159 UBE2TQ9NPD8 197 aaPredicted RBP9.71□□□□□ -0.86
SYNE1-217ENST00000466159 UTP3Q9NQZ2 479 aaKnown RBP eCLIP9.71□□□□□ -0.86
SYNE1-217ENST00000466159 SUCLA2Q9P2R7 463 aaPredicted RBP9.71□□□□□ -0.86
SYNE1-217ENST00000466159 DBR1Q9UK59 544 aaKnown RBP9.71□□□□□ -0.86
SYNE1-217ENST00000466159 PPP1R9AQ9ULJ8 1098 aa9.71□□□□□ -0.86
SYNE1-217ENST00000466159 ATP8B3O60423 1300 aa9.71□□□□□ -0.86
SYNE1-217ENST00000466159 ASTN2O75129 1339 aaPredicted RBP9.71□□□□□ -0.86
SYNE1-217ENST00000466159 PGRMC1O00264 195 aaKnown RBP9.7□□□□□ -0.86
SYNE1-217ENST00000466159 BACH1O14867 736 aa9.7□□□□□ -0.86
SYNE1-217ENST00000466159 SLC16A4O15374 487 aa9.7□□□□□ -0.86
SYNE1-217ENST00000466159 KRT14P02533 472 aa9.7□□□□□ -0.86
SYNE1-217ENST00000466159 ITGA4P13612 1032 aa9.7□□□□□ -0.86
SYNE1-217ENST00000466159 TNFAIP3P21580 790 aa9.7□□□□□ -0.86
SYNE1-217ENST00000466159 VAMP7P51809 220 aa9.7□□□□□ -0.86
SYNE1-217ENST00000466159 NPEPPSP55786 919 aa9.7□□□□□ -0.86
SYNE1-217ENST00000466159 PEX3P56589 373 aa9.7□□□□□ -0.86
SYNE1-217ENST00000466159 ERVK-9P63128 1117 aa9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms