RNA–Protein interactions for RNA: ENST00000461819.5

CCDC28B-203, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 780 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-203ENST00000461819 SFPQP23246 707 aaKnown RBP eCLIP25.34■■□□□ 1.65
CCDC28B-203ENST00000461819 DDIT3P35638 169 aa25.34■■□□□ 1.65
CCDC28B-203ENST00000461819 PHKA2P46019 1235 aa25.34■■□□□ 1.65
CCDC28B-203ENST00000461819 ME1P48163 572 aa25.34■■□□□ 1.65
CCDC28B-203ENST00000461819 LRCH3Q96II8 777 aa25.34■■□□□ 1.65
CCDC28B-203ENST00000461819 LOC101059915A0A1B0GWI6 518 aaPredicted RBP25.33■■□□□ 1.65
CCDC28B-203ENST00000461819 DENND3A2RUS2 1198 aa25.33■■□□□ 1.65
CCDC28B-203ENST00000461819 FGFR4P22455 802 aa25.33■■□□□ 1.65
CCDC28B-203ENST00000461819 GLRA2P23416 452 aa25.33■■□□□ 1.65
CCDC28B-203ENST00000461819 FXR1P51114 621 aaKnown RBP eCLIP25.33■■□□□ 1.65
CCDC28B-203ENST00000461819 CAPSQ13938 189 aa25.33■■□□□ 1.65
CCDC28B-203ENST00000461819 HERC6Q8IVU3 1022 aa25.33■■□□□ 1.65
CCDC28B-203ENST00000461819 ZBED2Q9BTP6 218 aa25.33■■□□□ 1.65
CCDC28B-203ENST00000461819 RUSC1Q9BVN2 902 aa25.33■■□□□ 1.65
CCDC28B-203ENST00000461819 TMX1Q9H3N1 280 aa25.33■■□□□ 1.65
CCDC28B-203ENST00000461819 IFT122Q9HBG6 1241 aa25.33■■□□□ 1.65
CCDC28B-203ENST00000461819 RABGGTBP53611 331 aa25.32■■□□□ 1.64
CCDC28B-203ENST00000461819 RINT1Q6NUQ1 792 aa25.32■■□□□ 1.64
CCDC28B-203ENST00000461819 FAM43BQ6ZT52 329 aaPredicted RBP25.32■■□□□ 1.64
CCDC28B-203ENST00000461819 CATSPER4Q7RTX7 472 aa25.32■■□□□ 1.64
CCDC28B-203ENST00000461819 SRGAP1Q7Z6B7 1085 aa25.32■■□□□ 1.64
CCDC28B-203ENST00000461819 TMCO2Q7Z6W1 182 aaPredicted RBP25.32■■□□□ 1.64
CCDC28B-203ENST00000461819 SYT2Q8N9I0 419 aaPredicted RBP25.32■■□□□ 1.64
CCDC28B-203ENST00000461819 KIFAP3Q92845 792 aa25.32■■□□□ 1.64
CCDC28B-203ENST00000461819 CHAMP1Q96JM3 812 aa25.32■■□□□ 1.64
CCDC28B-203ENST00000461819 SPATA32Q96LK8 384 aa25.32■■□□□ 1.64
CCDC28B-203ENST00000461819 MSRAQ9UJ68 235 aa25.32■■□□□ 1.64
CCDC28B-203ENST00000461819 LRRIQ4A6NIV6 560 aa25.31■■□□□ 1.64
CCDC28B-203ENST00000461819 ENPP3O14638 875 aa25.31■■□□□ 1.64
CCDC28B-203ENST00000461819 SLC12A3P55017 1021 aa25.31■■□□□ 1.64
CCDC28B-203ENST00000461819 DHX8Q14562 1220 aaKnown RBP25.31■■□□□ 1.64
CCDC28B-203ENST00000461819 RAB30Q15771 203 aa25.31■■□□□ 1.64
CCDC28B-203ENST00000461819 RRAGBQ5VZM2 374 aa25.31■■□□□ 1.64
CCDC28B-203ENST00000461819 FAM117BQ6P1L5 589 aa25.31■■□□□ 1.64
CCDC28B-203ENST00000461819 LINC01599Q8WXQ3 324 aa25.31■■□□□ 1.64
CCDC28B-203ENST00000461819 RAD54LQ92698 747 aa25.31■■□□□ 1.64
CCDC28B-203ENST00000461819 IFT74Q96LB3 600 aa25.31■■□□□ 1.64
CCDC28B-203ENST00000461819 ADAM2Q99965 735 aa25.31■■□□□ 1.64
CCDC28B-203ENST00000461819 PBX4Q9BYU1 374 aa25.31■■□□□ 1.64
CCDC28B-203ENST00000461819 TSPYL2Q9H2G4 693 aaPredicted RBP25.31■■□□□ 1.64
CCDC28B-203ENST00000461819 RCOR1Q9UKL0 485 aa25.31■■□□□ 1.64
CCDC28B-203ENST00000461819 TTC3P53804 2025 aa25.3■■□□□ 1.64
CCDC28B-203ENST00000461819 MGEA5O60502 916 aa25.3■■□□□ 1.64
CCDC28B-203ENST00000461819 HIP1RO75146 1068 aa25.3■■□□□ 1.64
CCDC28B-203ENST00000461819 UPP2O95045 317 aa25.3■■□□□ 1.64
CCDC28B-203ENST00000461819 ZSCAN20P17040 1043 aaPredicted RBP25.3■■□□□ 1.64
CCDC28B-203ENST00000461819 IBSPP21815 317 aaPredicted RBP25.3■■□□□ 1.64
CCDC28B-203ENST00000461819 DNAJB2P25686 324 aa25.3■■□□□ 1.64
CCDC28B-203ENST00000461819 PBX2P40425 430 aa25.3■■□□□ 1.64
CCDC28B-203ENST00000461819 MCM6Q14566 821 aa25.3■■□□□ 1.64
CCDC28B-203ENST00000461819 PPP2R5AQ15172 486 aa25.3■■□□□ 1.64
CCDC28B-203ENST00000461819 CCDC73Q6ZRK6 1079 aa25.3■■□□□ 1.64
CCDC28B-203ENST00000461819 C1orf186Q6ZWK4 172 aa25.3■■□□□ 1.64
CCDC28B-203ENST00000461819 LRRC15Q8TF66 581 aa25.3■■□□□ 1.64
CCDC28B-203ENST00000461819 LARP4BQ92615 738 aaKnown RBP25.3■■□□□ 1.64
CCDC28B-203ENST00000461819 DRC1Q96MC2 740 aa25.3■■□□□ 1.64
CCDC28B-203ENST00000461819 TIPINQ9BVW5 301 aa25.3■■□□□ 1.64
CCDC28B-203ENST00000461819 POLD4Q9HCU8 107 aa25.3■■□□□ 1.64
CCDC28B-203ENST00000461819 BLOC1S4Q9NUP1 217 aa25.3■■□□□ 1.64
CCDC28B-203ENST00000461819 KCND2Q9NZV8 630 aa25.3■■□□□ 1.64
CCDC28B-203ENST00000461819 STK17AQ9UEE5 414 aa25.3■■□□□ 1.64
CCDC28B-203ENST00000461819 PCDHA7Q9UN72 937 aa25.3■■□□□ 1.64
CCDC28B-203ENST00000461819 PCDHA11Q9Y5I1 949 aa25.3■■□□□ 1.64
CCDC28B-203ENST00000461819 INO80B-WBP1J3KQ70 363 aa25.29■■□□□ 1.64
CCDC28B-203ENST00000461819 TLL1O43897 1013 aa25.29■■□□□ 1.64
CCDC28B-203ENST00000461819 STAT6P42226 847 aa25.29■■□□□ 1.64
CCDC28B-203ENST00000461819 PTENP60484 403 aa25.29■■□□□ 1.64
CCDC28B-203ENST00000461819 POU5F1BQ06416 359 aa25.29■■□□□ 1.64
CCDC28B-203ENST00000461819 RAD51AP2Q09MP3 1159 aa25.29■■□□□ 1.64
CCDC28B-203ENST00000461819 GPBP1Q86WP2 473 aa25.29■■□□□ 1.64
CCDC28B-203ENST00000461819 LEO1Q8WVC0 666 aaPredicted RBP25.29■■□□□ 1.64
CCDC28B-203ENST00000461819 BSNDQ8WZ55 320 aa25.29■■□□□ 1.64
CCDC28B-203ENST00000461819 MINDY3Q9H8M7 445 aa25.29■■□□□ 1.64
CCDC28B-203ENST00000461819 C1orf112Q9NSG2 853 aa25.29■■□□□ 1.64
CCDC28B-203ENST00000461819 ERLIN2O94905 339 aa25.28■■□□□ 1.64
CCDC28B-203ENST00000461819 GJB5O95377 273 aa25.28■■□□□ 1.64
CCDC28B-203ENST00000461819 GUCY2CP25092 1073 aa25.28■■□□□ 1.64
CCDC28B-203ENST00000461819 AXDND1Q5T1B0 1012 aaPredicted RBP25.28■■□□□ 1.64
CCDC28B-203ENST00000461819 SHC4Q6S5L8 630 aa25.28■■□□□ 1.64
CCDC28B-203ENST00000461819 RTN4RL1Q86UN2 441 aaPredicted RBP25.28■■□□□ 1.64
CCDC28B-203ENST00000461819 ZBTB8OSQ8IWT0 167 aa25.28■■□□□ 1.64
CCDC28B-203ENST00000461819 PDILTQ8N807 584 aa25.28■■□□□ 1.64
CCDC28B-203ENST00000461819 TOP1MTQ969P6 601 aa25.28■■□□□ 1.64
CCDC28B-203ENST00000461819 TIFAQ96CG3 184 aa25.28■■□□□ 1.64
CCDC28B-203ENST00000461819 PANK2Q9BZ23 570 aa25.28■■□□□ 1.64
CCDC28B-203ENST00000461819 SCAND2PQ9GZW5 306 aaPredicted RBP25.28■■□□□ 1.64
CCDC28B-203ENST00000461819 RGS18Q9NS28 235 aa25.28■■□□□ 1.64
CCDC28B-203ENST00000461819 CIZ1Q9ULV3 898 aaPredicted RBP25.28■■□□□ 1.64
CCDC28B-203ENST00000461819 PIN4Q9Y237 131 aaKnown RBP25.28■■□□□ 1.64
CCDC28B-203ENST00000461819 KRT18P05783 430 aaKnown RBP25.27■■□□□ 1.64
CCDC28B-203ENST00000461819 NAMPTP43490 491 aa25.27■■□□□ 1.64
CCDC28B-203ENST00000461819 IFNLR1Q8IU57 520 aaPredicted RBP25.27■■□□□ 1.64
CCDC28B-203ENST00000461819 DEPTORQ8TB45 409 aa25.27■■□□□ 1.64
CCDC28B-203ENST00000461819 NFKBIZQ9BYH8 718 aa25.27■■□□□ 1.64
CCDC28B-203ENST00000461819 MYOGP15173 224 aa25.26■■□□□ 1.63
CCDC28B-203ENST00000461819 MBTD1Q05BQ5 628 aa25.26■■□□□ 1.63
CCDC28B-203ENST00000461819 DSC3Q14574 896 aa25.26■■□□□ 1.63
CCDC28B-203ENST00000461819 SLC24A5Q71RS6 500 aa25.26■■□□□ 1.63
CCDC28B-203ENST00000461819 C2orf40Q9H1Z8 148 aa25.26■■□□□ 1.63
CCDC28B-203ENST00000461819 NKX2-4Q9H2Z4 354 aa25.26■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms