RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 BHMT2Q9H2M3 363 aa13.17□□□□□ -0.3
VPS52-213ENST00000461743 TMX1Q9H3N1 280 aa13.17□□□□□ -0.3
VPS52-213ENST00000461743 SLC28A3Q9HAS3 691 aa13.17□□□□□ -0.3
VPS52-213ENST00000461743 IFT122Q9HBG6 1241 aa13.17□□□□□ -0.3
VPS52-213ENST00000461743 CHST12Q9NRB3 414 aa13.17□□□□□ -0.3
VPS52-213ENST00000461743 RGS18Q9NS28 235 aa13.17□□□□□ -0.3
VPS52-213ENST00000461743 DACT1Q9NYF0 836 aa13.17□□□□□ -0.3
VPS52-213ENST00000461743 YBX2Q9Y2T7 364 aaKnown RBP13.17□□□□□ -0.3
VPS52-213ENST00000461743 CLIC4Q9Y696 253 aa13.17□□□□□ -0.3
VPS52-213ENST00000461743 PDCD11Q14690 1871 aaKnown RBP13.16□□□□□ -0.3
VPS52-213ENST00000461743 PHLPP2Q6ZVD8 1323 aa13.16□□□□□ -0.3
VPS52-213ENST00000461743 ENPP3O14638 875 aa13.16□□□□□ -0.3
VPS52-213ENST00000461743 PPP6R2O75170 966 aa13.16□□□□□ -0.3
VPS52-213ENST00000461743 ZSCAN20P17040 1043 aaPredicted RBP13.16□□□□□ -0.3
VPS52-213ENST00000461743 PBX2P40425 430 aa13.16□□□□□ -0.3
VPS52-213ENST00000461743 NFX1Q12986 1120 aaKnown RBP13.16□□□□□ -0.3
VPS52-213ENST00000461743 DSC3Q14574 896 aa13.16□□□□□ -0.3
VPS52-213ENST00000461743 STK38Q15208 465 aa13.16□□□□□ -0.3
VPS52-213ENST00000461743 PPP2R2DQ66LE6 453 aa13.16□□□□□ -0.3
VPS52-213ENST00000461743 SLC24A5Q71RS6 500 aa13.16□□□□□ -0.3
VPS52-213ENST00000461743 DEFB123Q8N688 67 aa13.16□□□□□ -0.3
VPS52-213ENST00000461743 KRI1Q8N9T8 703 aaKnown RBP13.16□□□□□ -0.3
VPS52-213ENST00000461743 RNF149Q8NC42 400 aa13.16□□□□□ -0.3
VPS52-213ENST00000461743 POLR3FQ9H1D9 316 aaPredicted RBP13.16□□□□□ -0.3
VPS52-213ENST00000461743 ELAC1Q9H777 363 aaKnown RBP13.16□□□□□ -0.3
VPS52-213ENST00000461743 RC3H2Q9HBD1 1191 aaKnown RBP13.16□□□□□ -0.3
VPS52-213ENST00000461743 BMP2KQ9NSY1 1161 aaPredicted RBP13.16□□□□□ -0.3
VPS52-213ENST00000461743 FBXO2Q9UK22 296 aaPredicted RBP13.16□□□□□ -0.3
VPS52-213ENST00000461743 ATP6V1DQ9Y5K8 247 aa13.16□□□□□ -0.3
VPS52-213ENST00000461743 ADGRA3Q8IWK6 1321 aa13.15□□□□□ -0.3
VPS52-213ENST00000461743 TRIP11Q15643 1979 aa13.15□□□□□ -0.3
VPS52-213ENST00000461743 HOXA2O43364 376 aa13.15□□□□□ -0.3
VPS52-213ENST00000461743 BRD1O95696 1058 aa13.15□□□□□ -0.3
VPS52-213ENST00000461743 CA3P07451 260 aa13.15□□□□□ -0.3
VPS52-213ENST00000461743 SKIP12755 728 aa13.15□□□□□ -0.3
VPS52-213ENST00000461743 GLRA2P23416 452 aa13.15□□□□□ -0.3
VPS52-213ENST00000461743 RAB27AP51159 221 aa13.15□□□□□ -0.3
VPS52-213ENST00000461743 RABGGTBP53611 331 aa13.15□□□□□ -0.3
VPS52-213ENST00000461743 PTENP60484 403 aa13.15□□□□□ -0.3
VPS52-213ENST00000461743 GRB10Q13322 594 aa13.15□□□□□ -0.3
VPS52-213ENST00000461743 CAPSQ13938 189 aa13.15□□□□□ -0.3
VPS52-213ENST00000461743 CDCA2Q69YH5 1023 aaPredicted RBP13.15□□□□□ -0.3
VPS52-213ENST00000461743 FAM173BQ6P4H8 233 aa13.15□□□□□ -0.3
VPS52-213ENST00000461743 CATSPER4Q7RTX7 472 aa13.15□□□□□ -0.3
VPS52-213ENST00000461743 CRIPAKQ8N1N5 446 aa13.15□□□□□ -0.3
VPS52-213ENST00000461743 LINC00301Q8NCQ3 95 aa13.15□□□□□ -0.3
VPS52-213ENST00000461743 KCNG4Q8TDN1 519 aa13.15□□□□□ -0.3
VPS52-213ENST00000461743 CCDC51Q96ER9 411 aa13.15□□□□□ -0.3
VPS52-213ENST00000461743 PRIMPOLQ96LW4 560 aa13.15□□□□□ -0.3
VPS52-213ENST00000461743 DRC1Q96MC2 740 aa13.15□□□□□ -0.3
VPS52-213ENST00000461743 SAMD11Q96NU1 681 aa13.15□□□□□ -0.3
VPS52-213ENST00000461743 PNMA5Q96PV4 448 aa13.15□□□□□ -0.3
VPS52-213ENST00000461743 YME1L1Q96TA2 773 aa13.15□□□□□ -0.3
VPS52-213ENST00000461743 C2orf40Q9H1Z8 148 aa13.15□□□□□ -0.3
VPS52-213ENST00000461743 NKX2-4Q9H2Z4 354 aa13.15□□□□□ -0.3
VPS52-213ENST00000461743 TTYH1Q9H313 450 aaPredicted RBP13.15□□□□□ -0.3
VPS52-213ENST00000461743 SEMA6BQ9H3T3 888 aa13.15□□□□□ -0.3
VPS52-213ENST00000461743 ZNF576Q9H609 170 aa13.15□□□□□ -0.3
VPS52-213ENST00000461743 C17orf75Q9HAS0 396 aa13.15□□□□□ -0.3
VPS52-213ENST00000461743 AGPAT5Q9NUQ2 364 aa13.15□□□□□ -0.3
VPS52-213ENST00000461743 CFAP45Q9UL16 551 aa13.15□□□□□ -0.3
VPS52-213ENST00000461743 RWDD3Q9Y3V2 267 aa13.15□□□□□ -0.3
VPS52-213ENST00000461743 PLXNA4Q9HCM2 1894 aa13.14□□□□□ -0.31
VPS52-213ENST00000461743 C9IYK1 514 aa13.14□□□□□ -0.31
VPS52-213ENST00000461743 E9PMD0 336 aa13.14□□□□□ -0.31
VPS52-213ENST00000461743 SPTLC2O15270 562 aa13.14□□□□□ -0.31
VPS52-213ENST00000461743 MGEA5O60502 916 aa13.14□□□□□ -0.31
VPS52-213ENST00000461743 GUCY2CP25092 1073 aa13.14□□□□□ -0.31
VPS52-213ENST00000461743 CDC25AP30304 524 aa13.14□□□□□ -0.31
VPS52-213ENST00000461743 AXLP30530 894 aa13.14□□□□□ -0.31
VPS52-213ENST00000461743 NAMPTP43490 491 aa13.14□□□□□ -0.31
VPS52-213ENST00000461743 FAM102BQ5T8I3 360 aa13.14□□□□□ -0.31
VPS52-213ENST00000461743 KSR1Q8IVT5 923 aa13.14□□□□□ -0.31
VPS52-213ENST00000461743 ZBTB8OSQ8IWT0 167 aa13.14□□□□□ -0.31
VPS52-213ENST00000461743 CMTR2Q8IYT2 770 aaKnown RBP13.14□□□□□ -0.31
VPS52-213ENST00000461743 SYT2Q8N9I0 419 aaPredicted RBP13.14□□□□□ -0.31
VPS52-213ENST00000461743 RASSF8Q8NHQ8 419 aa13.14□□□□□ -0.31
VPS52-213ENST00000461743 ASAP3Q8TDY4 903 aa13.14□□□□□ -0.31
VPS52-213ENST00000461743 IFT74Q96LB3 600 aa13.14□□□□□ -0.31
VPS52-213ENST00000461743 ADAM2Q99965 735 aa13.14□□□□□ -0.31
VPS52-213ENST00000461743 TMEM161AQ9NX61 479 aa13.14□□□□□ -0.31
VPS52-213ENST00000461743 MTMR10Q9NXD2 777 aa13.14□□□□□ -0.31
VPS52-213ENST00000461743 STK17AQ9UEE5 414 aa13.14□□□□□ -0.31
VPS52-213ENST00000461743 CCDC39Q9UFE4 941 aa13.14□□□□□ -0.31
VPS52-213ENST00000461743 KCNG1Q9UIX4 513 aa13.14□□□□□ -0.31
VPS52-213ENST00000461743 COL6A3P12111 3177 aa13.13□□□□□ -0.31
VPS52-213ENST00000461743 ZMYM2Q9UBW7 1377 aa13.13□□□□□ -0.31
VPS52-213ENST00000461743 ERLIN2O94905 339 aa13.13□□□□□ -0.31
VPS52-213ENST00000461743 SLC34A2O95436 690 aa13.13□□□□□ -0.31
VPS52-213ENST00000461743 SRGAP2CP0DJJ0 459 aa13.13□□□□□ -0.31
VPS52-213ENST00000461743 PRKCSHP14314 528 aaPredicted RBP13.13□□□□□ -0.31
VPS52-213ENST00000461743 PLCG1P19174 1290 aa13.13□□□□□ -0.31
VPS52-213ENST00000461743 MARCKSP29966 332 aaPredicted RBP13.13□□□□□ -0.31
VPS52-213ENST00000461743 SLC12A3P55017 1021 aa13.13□□□□□ -0.31
VPS52-213ENST00000461743 FAM189BP81408 668 aa13.13□□□□□ -0.31
VPS52-213ENST00000461743 CEBPZQ03701 1054 aaKnown RBP13.13□□□□□ -0.31
VPS52-213ENST00000461743 GRIN1Q05586 938 aa13.13□□□□□ -0.31
VPS52-213ENST00000461743 MBTD1Q05BQ5 628 aa13.13□□□□□ -0.31
VPS52-213ENST00000461743 NCBP1Q09161 790 aaKnown RBP13.13□□□□□ -0.31
VPS52-213ENST00000461743 PKP1Q13835 747 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms