RNA–Protein interactions for RNA: ENST00000449058.6

TOM1-210, Transcript of target of myb1 membrane trafficking protein, human

APPRIS P3 TSL 1 (best) BASIC

Gene TOM1, Length 2,389 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TOM1-210	ENST00000449058	C1orf131	Q8NDD1	294 aa	Known RBP	18.4	■□□□□ 0.54
TOM1-210	ENST00000449058	AP1M1	Q9BXS5	423 aa		18.4	■□□□□ 0.54
TOM1-210	ENST00000449058	GLIS2	Q9BZE0	524 aa	Predicted RBP	18.4	■□□□□ 0.54
TOM1-210	ENST00000449058	EXOC3	O60645	756 aa		18.39	■□□□□ 0.53
TOM1-210	ENST00000449058	KRT14	P02533	472 aa		18.39	■□□□□ 0.53
TOM1-210	ENST00000449058	CCDC172	P0C7W6	258 aa		18.39	■□□□□ 0.53
TOM1-210	ENST00000449058	RFX1	P22670	979 aa		18.39	■□□□□ 0.53
TOM1-210	ENST00000449058	PPAT	Q06203	517 aa		18.39	■□□□□ 0.53
TOM1-210	ENST00000449058	KIF22	Q14807	665 aa		18.39	■□□□□ 0.53
TOM1-210	ENST00000449058	PADI6	Q6TGC4	694 aa		18.39	■□□□□ 0.53
TOM1-210	ENST00000449058	NIPA1	Q7RTP0	329 aa		18.39	■□□□□ 0.53
TOM1-210	ENST00000449058	SYCP3	Q8IZU3	236 aa		18.39	■□□□□ 0.53
TOM1-210	ENST00000449058	TSPYL1	Q9H0U9	437 aa		18.39	■□□□□ 0.53
TOM1-210	ENST00000449058	RSPH14	Q9UHP6	348 aa		18.39	■□□□□ 0.53
TOM1-210	ENST00000449058	TTC7A	Q9ULT0	858 aa	Predicted RBP	18.39	■□□□□ 0.53
TOM1-210	ENST00000449058	ZNF536	O15090	1300 aa		18.39	■□□□□ 0.53
TOM1-210	ENST00000449058	COL4A5	P29400	1685 aa		18.39	■□□□□ 0.53
TOM1-210	ENST00000449058	BUB1B	O60566	1050 aa	Predicted RBP	18.39	■□□□□ 0.53
TOM1-210	ENST00000449058	RAD17	O75943	681 aa		18.39	■□□□□ 0.53
TOM1-210	ENST00000449058	ICAM1	P05362	532 aa		18.39	■□□□□ 0.53
TOM1-210	ENST00000449058	MAPT	P10636	758 aa	Known RBP	18.39	■□□□□ 0.53
TOM1-210	ENST00000449058	ZNF772	Q68DY9	489 aa	Predicted RBP	18.39	■□□□□ 0.53
TOM1-210	ENST00000449058	PHLDB3	Q6NSJ2	640 aa		18.39	■□□□□ 0.53
TOM1-210	ENST00000449058	SLC35G2	Q8TBE7	412 aa		18.39	■□□□□ 0.53
TOM1-210	ENST00000449058	AGBL1	Q96MI9	1066 aa		18.39	■□□□□ 0.53
TOM1-210	ENST00000449058	TMEM39B	Q9GZU3	492 aa		18.39	■□□□□ 0.53
TOM1-210	ENST00000449058	OSGEP	Q9NPF4	335 aa		18.39	■□□□□ 0.53
TOM1-210	ENST00000449058	COL20A1	Q9P218	1284 aa		18.39	■□□□□ 0.53
TOM1-210	ENST00000449058	FEZ2	Q9UHY8	353 aa	Predicted RBP	18.39	■□□□□ 0.53
TOM1-210	ENST00000449058	KRIT1	O00522	736 aa		18.38	■□□□□ 0.53
TOM1-210	ENST00000449058	EIF3H	O15372	352 aa	Known RBP eCLIP	18.38	■□□□□ 0.53
TOM1-210	ENST00000449058	DHX15	O43143	795 aa	Known RBP	18.38	■□□□□ 0.53
TOM1-210	ENST00000449058	GRIPAP1	Q4V328	841 aa		18.38	■□□□□ 0.53
TOM1-210	ENST00000449058	EMC10	Q5UCC4	262 aa		18.38	■□□□□ 0.53
TOM1-210	ENST00000449058	MIER3	Q7Z3K6	550 aa		18.38	■□□□□ 0.53
TOM1-210	ENST00000449058	OGFOD1	Q8N543	542 aa		18.38	■□□□□ 0.53
TOM1-210	ENST00000449058	SLITRK6	Q9H5Y7	841 aa		18.38	■□□□□ 0.53
TOM1-210	ENST00000449058	KCNH7	Q9NS40	1196 aa		18.38	■□□□□ 0.53
TOM1-210	ENST00000449058	PGAP2	Q9UHJ9	254 aa		18.38	■□□□□ 0.53
TOM1-210	ENST00000449058	AMFR	Q9UKV5	643 aa		18.38	■□□□□ 0.53
TOM1-210	ENST00000449058	IGSF9B	Q9UPX0	1349 aa		18.38	■□□□□ 0.53
TOM1-210	ENST00000449058		A6NNZ2	444 aa		18.38	■□□□□ 0.53
TOM1-210	ENST00000449058	P4HB	P07237	508 aa	Known RBP	18.38	■□□□□ 0.53
TOM1-210	ENST00000449058	GHRHR	Q02643	423 aa		18.38	■□□□□ 0.53
TOM1-210	ENST00000449058	ALCAM	Q13740	583 aa		18.38	■□□□□ 0.53
TOM1-210	ENST00000449058	TUBB8	Q3ZCM7	444 aa		18.38	■□□□□ 0.53
TOM1-210	ENST00000449058	SAMD1	Q6SPF0	538 aa	Predicted RBP	18.38	■□□□□ 0.53
TOM1-210	ENST00000449058	MIGA2	Q7L4E1	593 aa		18.38	■□□□□ 0.53
TOM1-210	ENST00000449058	FAM83A	Q86UY5	434 aa		18.38	■□□□□ 0.53
TOM1-210	ENST00000449058	C12orf56	Q8IXR9	622 aa		18.38	■□□□□ 0.53
TOM1-210	ENST00000449058	HOOK2	Q96ED9	719 aa		18.38	■□□□□ 0.53
TOM1-210	ENST00000449058	DDX47	Q9H0S4	455 aa	Known RBP	18.38	■□□□□ 0.53
TOM1-210	ENST00000449058	DBR1	Q9UK59	544 aa	Known RBP	18.38	■□□□□ 0.53
TOM1-210	ENST00000449058	CCPG1	Q9ULG6	757 aa		18.38	■□□□□ 0.53
TOM1-210	ENST00000449058		K7ENM7	598 aa		18.37	■□□□□ 0.53
TOM1-210	ENST00000449058	DDX39A	O00148	427 aa	Known RBP	18.37	■□□□□ 0.53
TOM1-210	ENST00000449058	ITGA4	P13612	1032 aa		18.37	■□□□□ 0.53
TOM1-210	ENST00000449058	INPP5B	P32019	993 aa		18.37	■□□□□ 0.53
TOM1-210	ENST00000449058	GNGT1	P63211	74 aa		18.37	■□□□□ 0.53
TOM1-210	ENST00000449058	MAP3K10	Q02779	954 aa		18.37	■□□□□ 0.53
TOM1-210	ENST00000449058	IL31RA	Q8NI17	732 aa		18.37	■□□□□ 0.53
TOM1-210	ENST00000449058	CLEC4D	Q8WXI8	215 aa		18.37	■□□□□ 0.53
TOM1-210	ENST00000449058	CTNNBL1	Q8WYA6	563 aa	Predicted RBP	18.37	■□□□□ 0.53
TOM1-210	ENST00000449058	TMEM206	Q9H813	350 aa		18.37	■□□□□ 0.53
TOM1-210	ENST00000449058	VEZT	Q9HBM0	779 aa		18.37	■□□□□ 0.53
TOM1-210	ENST00000449058	LARS	Q9P2J5	1176 aa	Known RBP	18.37	■□□□□ 0.53
TOM1-210	ENST00000449058	DDX3Y	O15523	660 aa	Known RBP	18.37	■□□□□ 0.53
TOM1-210	ENST00000449058	INTS8	Q75QN2	995 aa	Known RBP	18.37	■□□□□ 0.53
TOM1-210	ENST00000449058	MTMR14	Q8NCE2	650 aa		18.37	■□□□□ 0.53
TOM1-210	ENST00000449058	PPP1R9A	Q9ULJ8	1098 aa		18.37	■□□□□ 0.53
TOM1-210	ENST00000449058	ZBTB12	Q9Y330	459 aa	Predicted RBP	18.37	■□□□□ 0.53
TOM1-210	ENST00000449058	FOXN3	O00409	490 aa	Predicted RBP	18.36	■□□□□ 0.53
TOM1-210	ENST00000449058	KRT13	P13646	458 aa		18.36	■□□□□ 0.53
TOM1-210	ENST00000449058	TNFAIP3	P21580	790 aa		18.36	■□□□□ 0.53
TOM1-210	ENST00000449058	ITGB3BP	Q13352	177 aa	Predicted RBP	18.36	■□□□□ 0.53
TOM1-210	ENST00000449058	KDM7A	Q6ZMT4	941 aa		18.36	■□□□□ 0.53
TOM1-210	ENST00000449058	SH2D3C	Q8N5H7	860 aa		18.36	■□□□□ 0.53
TOM1-210	ENST00000449058	RDH13	Q8NBN7	331 aa		18.36	■□□□□ 0.53
TOM1-210	ENST00000449058	SEC14L1	Q92503	715 aa		18.36	■□□□□ 0.53
TOM1-210	ENST00000449058	ARHGEF26	Q96DR7	871 aa		18.36	■□□□□ 0.53
TOM1-210	ENST00000449058	PSMD1	Q99460	953 aa		18.36	■□□□□ 0.53
TOM1-210	ENST00000449058	DIS3	Q9Y2L1	958 aa	Known RBP	18.36	■□□□□ 0.53
TOM1-210	ENST00000449058	UBIAD1	Q9Y5Z9	338 aa		18.36	■□□□□ 0.53
TOM1-210	ENST00000449058	ZHX2	Q9Y6X8	837 aa		18.36	■□□□□ 0.53
TOM1-210	ENST00000449058	NFIB	O00712	420 aa		18.35	■□□□□ 0.53
TOM1-210	ENST00000449058	LYPLA2	O95372	231 aa		18.35	■□□□□ 0.53
TOM1-210	ENST00000449058	ASNS	P08243	561 aa		18.35	■□□□□ 0.53
TOM1-210	ENST00000449058	DLG4	P78352	724 aa		18.35	■□□□□ 0.53
TOM1-210	ENST00000449058	HLTF	Q14527	1009 aa	Known RBP eCLIP	18.35	■□□□□ 0.53
TOM1-210	ENST00000449058	PLS1	Q14651	629 aa		18.35	■□□□□ 0.53
TOM1-210	ENST00000449058	ARHGAP44	Q17R89	818 aa		18.35	■□□□□ 0.53
TOM1-210	ENST00000449058	LRIG3	Q6UXM1	1119 aa		18.35	■□□□□ 0.53
TOM1-210	ENST00000449058	PALB2	Q86YC2	1186 aa		18.35	■□□□□ 0.53
TOM1-210	ENST00000449058	AGO4	Q9HCK5	861 aa	Known RBP	18.35	■□□□□ 0.53
TOM1-210	ENST00000449058	TAS2R14	Q9NYV8	317 aa		18.35	■□□□□ 0.53
TOM1-210	ENST00000449058	ANKRD62	A6NC57	917 aa		18.35	■□□□□ 0.53
TOM1-210	ENST00000449058	TRIM66	O15016	1216 aa		18.35	■□□□□ 0.53
TOM1-210	ENST00000449058	P4HA2	O15460	535 aa		18.35	■□□□□ 0.53
TOM1-210	ENST00000449058	ABCB4	P21439	1286 aa		18.35	■□□□□ 0.53
TOM1-210	ENST00000449058	RARRES1	P49788	294 aa		18.35	■□□□□ 0.53

Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms