RNA–Protein interactions for RNA: ENST00000448183.6

NEDD9-204, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best)

Gene NEDD9, Length 4,934 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-204ENST00000448183 RFFLQ8WZ73 363 aa8.29□□□□□ -1.08
NEDD9-204ENST00000448183 C11orf70Q9BRQ4 267 aa8.29□□□□□ -1.08
NEDD9-204ENST00000448183 WNT8AQ9H1J5 351 aa8.29□□□□□ -1.08
NEDD9-204ENST00000448183 STRIP2Q9ULQ0 834 aa8.29□□□□□ -1.08
NEDD9-204ENST00000448183 L3MBTL1Q9Y468 752 aa8.29□□□□□ -1.08
NEDD9-204ENST00000448183 NLRP1Q9C000 1473 aa8.29□□□□□ -1.08
NEDD9-204ENST00000448183 SYCE1LA8MT33 242 aa8.29□□□□□ -1.08
NEDD9-204ENST00000448183 PPEF1O14829 653 aaPredicted RBP8.29□□□□□ -1.08
NEDD9-204ENST00000448183 CCDC22O60826 627 aa8.29□□□□□ -1.08
NEDD9-204ENST00000448183 GGPS1O95749 300 aa8.29□□□□□ -1.08
NEDD9-204ENST00000448183 SOX5P35711 763 aa8.29□□□□□ -1.08
NEDD9-204ENST00000448183 CCNA1P78396 465 aa8.29□□□□□ -1.08
NEDD9-204ENST00000448183 DRAP1Q14919 205 aaPredicted RBP8.29□□□□□ -1.08
NEDD9-204ENST00000448183 SHC4Q6S5L8 630 aa8.29□□□□□ -1.08
NEDD9-204ENST00000448183 CYB5R4Q7L1T6 521 aa8.29□□□□□ -1.08
NEDD9-204ENST00000448183 RNF25Q96BH1 459 aaPredicted RBP8.29□□□□□ -1.08
NEDD9-204ENST00000448183 ASNSD1Q9NWL6 643 aa8.29□□□□□ -1.08
NEDD9-204ENST00000448183 KLHL8Q9P2G9 620 aaPredicted RBP8.29□□□□□ -1.08
NEDD9-204ENST00000448183 SNX12Q9UMY4 172 aa8.29□□□□□ -1.08
NEDD9-204ENST00000448183 HEG1Q9ULI3 1381 aa8.29□□□□□ -1.08
NEDD9-204ENST00000448183 NEDD4P46934 1319 aa8.29□□□□□ -1.08
NEDD9-204ENST00000448183 CFAP69A5D8W1 941 aa8.29□□□□□ -1.08
NEDD9-204ENST00000448183 EIF2AK2P19525 551 aaKnown RBP8.29□□□□□ -1.08
NEDD9-204ENST00000448183 LTKP29376 864 aa8.29□□□□□ -1.08
NEDD9-204ENST00000448183 MDH1P40925 334 aaKnown RBP8.29□□□□□ -1.08
NEDD9-204ENST00000448183 MTF1Q14872 753 aa8.29□□□□□ -1.08
NEDD9-204ENST00000448183 TXNRD1Q16881 649 aa8.29□□□□□ -1.08
NEDD9-204ENST00000448183 ERFEQ4G0M1 354 aa8.29□□□□□ -1.08
NEDD9-204ENST00000448183 E4F1Q66K89 784 aaPredicted RBP8.29□□□□□ -1.08
NEDD9-204ENST00000448183 TMED8Q6PL24 325 aaPredicted RBP8.29□□□□□ -1.08
NEDD9-204ENST00000448183 STAG2Q8N3U4 1231 aa8.29□□□□□ -1.08
NEDD9-204ENST00000448183 MCPH1Q8NEM0 835 aa8.29□□□□□ -1.08
NEDD9-204ENST00000448183 SPDYE1Q8NFV5 336 aaPredicted RBP8.29□□□□□ -1.08
NEDD9-204ENST00000448183 SNF8Q96H20 258 aa8.29□□□□□ -1.08
NEDD9-204ENST00000448183 NUP85Q9BW27 656 aa8.29□□□□□ -1.08
NEDD9-204ENST00000448183 SENP1Q9P0U3 644 aa8.29□□□□□ -1.08
NEDD9-204ENST00000448183 SAMD9LQ8IVG5 1584 aa8.29□□□□□ -1.08
NEDD9-204ENST00000448183 E9PMD0 336 aa8.29□□□□□ -1.08
NEDD9-204ENST00000448183 GOLGA8MH3BSY2 632 aa8.29□□□□□ -1.08
NEDD9-204ENST00000448183 MAN1A2O60476 641 aa8.29□□□□□ -1.08
NEDD9-204ENST00000448183 FTLP02792 175 aaPredicted RBP8.29□□□□□ -1.08
NEDD9-204ENST00000448183 KITP10721 976 aa8.29□□□□□ -1.08
NEDD9-204ENST00000448183 RFX1P22670 979 aa8.29□□□□□ -1.08
NEDD9-204ENST00000448183 ZBTB41Q5SVQ8 909 aa8.29□□□□□ -1.08
NEDD9-204ENST00000448183 NUDCD3Q8IVD9 361 aa8.29□□□□□ -1.08
NEDD9-204ENST00000448183 FOXP4Q8IVH2 680 aaPredicted RBP8.29□□□□□ -1.08
NEDD9-204ENST00000448183 ICA1LQ8NDH6 482 aa8.29□□□□□ -1.08
NEDD9-204ENST00000448183 RNF139Q8WU17 664 aa8.29□□□□□ -1.08
NEDD9-204ENST00000448183 EXT2Q93063 718 aa8.29□□□□□ -1.08
NEDD9-204ENST00000448183 FAM20AQ96MK3 541 aa8.29□□□□□ -1.08
NEDD9-204ENST00000448183 INPP5FQ9Y2H2 1132 aa8.29□□□□□ -1.08
NEDD9-204ENST00000448183 TTC37Q6PGP7 1564 aa8.28□□□□□ -1.08
NEDD9-204ENST00000448183 CDK12Q9NYV4 1490 aaPredicted RBP8.28□□□□□ -1.08
NEDD9-204ENST00000448183 DIAPH2O60879 1101 aa8.28□□□□□ -1.08
NEDD9-204ENST00000448183 PPARGP37231 505 aaPredicted RBP8.28□□□□□ -1.08
NEDD9-204ENST00000448183 HSPA9P38646 679 aaKnown RBP8.28□□□□□ -1.08
NEDD9-204ENST00000448183 PDIA2Q13087 525 aaKnown RBP8.28□□□□□ -1.08
NEDD9-204ENST00000448183 ZNF394Q53GI3 561 aa8.28□□□□□ -1.08
NEDD9-204ENST00000448183 PDXDC1Q6P996 788 aa8.28□□□□□ -1.08
NEDD9-204ENST00000448183 CDC26Q8NHZ8 85 aa8.28□□□□□ -1.08
NEDD9-204ENST00000448183 NCLNQ969V3 563 aa8.28□□□□□ -1.08
NEDD9-204ENST00000448183 LRRC1Q9BTT6 524 aa8.28□□□□□ -1.08
NEDD9-204ENST00000448183 EPN3Q9H201 632 aa8.28□□□□□ -1.08
NEDD9-204ENST00000448183 LY9Q9HBG7 655 aa8.28□□□□□ -1.08
NEDD9-204ENST00000448183 GTSE1Q9NYZ3 720 aa8.28□□□□□ -1.08
NEDD9-204ENST00000448183 ARL2BPQ9Y2Y0 163 aa8.28□□□□□ -1.08
NEDD9-204ENST00000448183 ATP8B3O60423 1300 aa8.28□□□□□ -1.08
NEDD9-204ENST00000448183 H3BRJ5 948 aa8.28□□□□□ -1.08
NEDD9-204ENST00000448183 ZBTB5O15062 677 aa8.28□□□□□ -1.08
NEDD9-204ENST00000448183 HNRNPCL1O60812 293 aaKnown RBP8.28□□□□□ -1.08
NEDD9-204ENST00000448183 KRT14P02533 472 aa8.28□□□□□ -1.08
NEDD9-204ENST00000448183 SMARCA1P28370 1054 aa8.28□□□□□ -1.08
NEDD9-204ENST00000448183 JAK3P52333 1124 aa8.28□□□□□ -1.08
NEDD9-204ENST00000448183 CCZ1BP86790 482 aa8.28□□□□□ -1.08
NEDD9-204ENST00000448183 CCZ1P86791 482 aaPredicted RBP8.28□□□□□ -1.08
NEDD9-204ENST00000448183 GPS1Q13098 491 aa8.28□□□□□ -1.08
NEDD9-204ENST00000448183 SPATA21Q7Z572 469 aa8.28□□□□□ -1.08
NEDD9-204ENST00000448183 RHOT1Q8IXI2 618 aa8.28□□□□□ -1.08
NEDD9-204ENST00000448183 ABI1Q8IZP0 508 aa8.28□□□□□ -1.08
NEDD9-204ENST00000448183 TMEM47Q9BQJ4 181 aa8.28□□□□□ -1.08
NEDD9-204ENST00000448183 DONSONQ9NYP3 566 aa8.28□□□□□ -1.08
NEDD9-204ENST00000448183 SEL1LQ9UBV2 794 aa8.28□□□□□ -1.08
NEDD9-204ENST00000448183 LIMA1Q9UHB6 759 aaKnown RBP8.28□□□□□ -1.08
NEDD9-204ENST00000448183 AMACRQ9UHK6 382 aa8.28□□□□□ -1.08
NEDD9-204ENST00000448183 HEY1Q9Y5J3 304 aa8.28□□□□□ -1.08
NEDD9-204ENST00000448183 UBN2Q6ZU65 1347 aa8.28□□□□□ -1.08
NEDD9-204ENST00000448183 AGTP01019 485 aa8.28□□□□□ -1.08
NEDD9-204ENST00000448183 KRT7P08729 469 aa8.28□□□□□ -1.08
NEDD9-204ENST00000448183 SRGAP2CP0DJJ0 459 aa8.28□□□□□ -1.08
NEDD9-204ENST00000448183 STAT4Q14765 748 aa8.28□□□□□ -1.08
NEDD9-204ENST00000448183 RABGAP1LQ5R372 815 aa8.28□□□□□ -1.08
NEDD9-204ENST00000448183 TMEM270Q6UE05 265 aa8.28□□□□□ -1.08
NEDD9-204ENST00000448183 DPP9Q86TI2 863 aa8.28□□□□□ -1.08
NEDD9-204ENST00000448183 SULF1Q8IWU6 871 aa8.28□□□□□ -1.08
NEDD9-204ENST00000448183 ZBED8Q8IZ13 594 aa8.28□□□□□ -1.08
NEDD9-204ENST00000448183 ENAHQ8N8S7 591 aaPredicted RBP8.28□□□□□ -1.08
NEDD9-204ENST00000448183 SLC26A7Q8TE54 656 aa8.28□□□□□ -1.08
NEDD9-204ENST00000448183 WWP1Q9H0M0 922 aa8.28□□□□□ -1.08
NEDD9-204ENST00000448183 KCNF1Q9H3M0 494 aa8.28□□□□□ -1.08
NEDD9-204ENST00000448183 BATF3Q9NR55 127 aa8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms