RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 EIF2B3Q9NR50 452 aaKnown RBP2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 CLEC1BQ9P126 229 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 SERPINB13Q9UIV8 391 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 RASAL2Q9UJF2 1139 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 GJD2Q9UKL4 321 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 PHF24Q9UPV7 400 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 GOLGA6L3A6NEY3 463 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 LGALS16A8MUM7 142 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 LINC01387J3KSC0 135 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 J3QL48 77 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 CPLX1O14810 134 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 GFRA3O60609 400 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 HSPA4LO95757 839 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 PDE6AP16499 860 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 PDIA3P30101 505 aaKnown RBP2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 ACTN2P35609 894 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 GRK3P35626 688 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 POLD2P49005 469 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 PIP4K2BP78356 416 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 LBRQ14739 615 aaKnown RBP2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 NKG7Q16617 165 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 FSCN1Q16658 493 aaKnown RBP2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 MPEG1Q2M385 716 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 ZC3H12AQ5D1E8 599 aaKnown RBP2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 ZBTB37Q5TC79 503 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 MBNL2Q5VZF2 373 aaKnown RBP2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 NUGGCQ68CJ6 796 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 BRINP3Q76B58 766 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 ERC1Q8IUD2 1116 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 FTSJ3Q8IY81 847 aaKnown RBP2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 TRIML1Q8N9V2 468 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 CCDC150Q8NCX0 1101 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 AUTS2Q8WXX7 1259 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 ZUFSPQ96AP4 578 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 IWS1Q96ST2 819 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 ADPGKQ9BRR6 497 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 STK31Q9BXU1 1019 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 UNKQ9C0B0 810 aaKnown RBP2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 C14orf93Q9H972 538 aaKnown RBP2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 MTRRQ9UBK8 725 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 ADD3Q9UEY8 706 aaKnown RBP2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 RPS6KA6Q9UK32 745 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 PHGDHO43175 533 aaKnown RBP2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 MSCO60682 206 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 RGS9O75916 674 aaPredicted RBP2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 FGF18O76093 207 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 SCG5P05408 212 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 LPLP06858 475 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 ZSCAN22P10073 491 aaPredicted RBP2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 KITP10721 976 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 MYL4P12829 197 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 RXRAP19793 462 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 MUTP22033 750 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 NOP2P46087 812 aaKnown RBP2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 PHC1P78364 1004 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 CUL4AQ13619 759 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 FGL2Q14314 439 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 MEA1Q16626 185 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 TRIM68Q6AZZ1 485 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 SHQ1Q6PI26 577 aaKnown RBP2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 ESPNLQ6ZVH7 1005 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 MIGA2Q7L4E1 593 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 GALNTL5Q7Z4T8 443 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 DNAJB7Q7Z6W7 309 aaPredicted RBP2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 OSTM1Q86WC4 334 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 CCDC117Q8IWD4 279 aaPredicted RBP2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 MARCH10Q8NA82 808 aaPredicted RBP2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 FRS2Q8WU20 508 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 RUFY2Q8WXA3 655 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 RTF1Q92541 710 aaKnown RBP2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 IQCDQ96DY2 449 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 C1orf159Q96HA4 380 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 KREMEN1Q96MU8 473 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 CARD10Q9BWT7 1032 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 ACE2Q9BYF1 805 aaPredicted RBP2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 SACM1LQ9NTJ5 587 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 SEL1LQ9UBV2 794 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 DPP7Q9UHL4 492 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 PGPEP1LA6NFU8 196 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 H0Y8X5 98 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 GOLGA6L22H0YM25 854 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 HOXC11O43248 304 aaPredicted RBP2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 MTHFD1P11586 935 aaKnown RBP2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 PLS3P13797 630 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 ATP6V1B1P15313 513 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 ERVK-24P63145 666 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 DUSP4Q13115 394 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 DAG1Q14118 895 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 DCTN1Q14203 1278 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 SURF1Q15526 300 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 KIF4BQ2VIQ3 1234 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 HECTD3Q5T447 861 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 DENND5AQ6IQ26 1287 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 KLHL17Q6TDP4 642 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 RAPH1Q70E73 1250 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 CPLX4Q7Z7G2 160 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 CHD1LQ86WJ1 897 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 TMTC1Q8IUR5 882 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 VWA5B2Q8N398 1253 aa2.63□□□□□ -1.99
CCDC88A-208ENST00000444458 ARL6IP6Q8N6S5 226 aa2.63□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms