RNA–Protein interactions for RNA: ENST00000444040.6

SHQ1-202, Transcript of SHQ1, H/ACA ribonucleoprotein assembly factor, humanhuman

TSL 2

Gene SHQ1, Length 2,844 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHQ1-202ENST00000444040 TMEM253P0C7T8 217 aa17.4■□□□□ 0.38
SHQ1-202ENST00000444040 ERVK-9P63128 1117 aa17.4■□□□□ 0.38
SHQ1-202ENST00000444040 MYL7Q01449 175 aa17.4■□□□□ 0.38
SHQ1-202ENST00000444040 GHRHRQ02643 423 aa17.4■□□□□ 0.38
SHQ1-202ENST00000444040 ITGB3BPQ13352 177 aaPredicted RBP17.4■□□□□ 0.38
SHQ1-202ENST00000444040 NIPA1Q7RTP0 329 aa17.4■□□□□ 0.38
SHQ1-202ENST00000444040 DAAM2Q86T65 1068 aa17.4■□□□□ 0.38
SHQ1-202ENST00000444040 SYCP3Q8IZU3 236 aa17.4■□□□□ 0.38
SHQ1-202ENST00000444040 TTLL6Q8N841 843 aa17.4■□□□□ 0.38
SHQ1-202ENST00000444040 RDH13Q8NBN7 331 aa17.4■□□□□ 0.38
SHQ1-202ENST00000444040 HOOK2Q96ED9 719 aa17.4■□□□□ 0.38
SHQ1-202ENST00000444040 ISCUQ9H1K1 167 aa17.4■□□□□ 0.38
SHQ1-202ENST00000444040 PKD2L1Q9P0L9 805 aa17.4■□□□□ 0.38
SHQ1-202ENST00000444040 TMCO5BA8MYB1 307 aa17.39■□□□□ 0.38
SHQ1-202ENST00000444040 ECHS1P30084 290 aa17.39■□□□□ 0.38
SHQ1-202ENST00000444040 PPATQ06203 517 aa17.39■□□□□ 0.38
SHQ1-202ENST00000444040 SLC35G2Q8TBE7 412 aa17.39■□□□□ 0.38
SHQ1-202ENST00000444040 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP17.39■□□□□ 0.38
SHQ1-202ENST00000444040 ZBED3Q96IU2 234 aaPredicted RBP17.39■□□□□ 0.38
SHQ1-202ENST00000444040 RUFY1Q96T51 708 aa17.39■□□□□ 0.38
SHQ1-202ENST00000444040 TAF1DQ9H5J8 278 aaPredicted RBP17.39■□□□□ 0.38
SHQ1-202ENST00000444040 TNS1Q9HBL0 1735 aaKnown RBP17.39■□□□□ 0.37
SHQ1-202ENST00000444040 ZNF233A6NK53 670 aa17.39■□□□□ 0.37
SHQ1-202ENST00000444040 K7ENM7 598 aa17.39■□□□□ 0.37
SHQ1-202ENST00000444040 MAPTP10636 758 aaKnown RBP17.39■□□□□ 0.37
SHQ1-202ENST00000444040 GUCY2FP51841 1108 aa17.39■□□□□ 0.37
SHQ1-202ENST00000444040 PLS1Q14651 629 aa17.39■□□□□ 0.37
SHQ1-202ENST00000444040 MAEAQ7L5Y9 396 aa17.39■□□□□ 0.37
SHQ1-202ENST00000444040 RFFLQ8WZ73 363 aa17.39■□□□□ 0.37
SHQ1-202ENST00000444040 TRERF1Q96PN7 1200 aa17.39■□□□□ 0.37
SHQ1-202ENST00000444040 AP1M1Q9BXS5 423 aa17.39■□□□□ 0.37
SHQ1-202ENST00000444040 LARSQ9P2J5 1176 aaKnown RBP17.39■□□□□ 0.37
SHQ1-202ENST00000444040 LCMT1Q9UIC8 334 aa17.39■□□□□ 0.37
SHQ1-202ENST00000444040 DBR1Q9UK59 544 aaKnown RBP17.39■□□□□ 0.37
SHQ1-202ENST00000444040 UBIAD1Q9Y5Z9 338 aa17.39■□□□□ 0.37
SHQ1-202ENST00000444040 IGSF9BQ9UPX0 1349 aa17.39■□□□□ 0.37
SHQ1-202ENST00000444040 SART1O43290 800 aaKnown RBP17.39■□□□□ 0.37
SHQ1-202ENST00000444040 KRT14P02533 472 aa17.39■□□□□ 0.37
SHQ1-202ENST00000444040 RARRES1P49788 294 aa17.39■□□□□ 0.37
SHQ1-202ENST00000444040 DLG4P78352 724 aa17.39■□□□□ 0.37
SHQ1-202ENST00000444040 MRPS9P82933 396 aaKnown RBP17.39■□□□□ 0.37
SHQ1-202ENST00000444040 KIF22Q14807 665 aa17.39■□□□□ 0.37
SHQ1-202ENST00000444040 CFAP58Q5T655 872 aa17.39■□□□□ 0.37
SHQ1-202ENST00000444040 ZNF772Q68DY9 489 aaPredicted RBP17.39■□□□□ 0.37
SHQ1-202ENST00000444040 SRLQ86TD4 932 aa17.39■□□□□ 0.37
SHQ1-202ENST00000444040 AGO4Q9HCK5 861 aaKnown RBP17.39■□□□□ 0.37
SHQ1-202ENST00000444040 TISP43B9A030 160 aa17.38■□□□□ 0.37
SHQ1-202ENST00000444040 BUB1BO60566 1050 aaPredicted RBP17.38■□□□□ 0.37
SHQ1-202ENST00000444040 PPFIA4O75335 1185 aa17.38■□□□□ 0.37
SHQ1-202ENST00000444040 IRAK1P51617 712 aa17.38■□□□□ 0.37
SHQ1-202ENST00000444040 TKFCQ3LXA3 575 aa17.38■□□□□ 0.37
SHQ1-202ENST00000444040 FMNL3Q8IVF7 1028 aa17.38■□□□□ 0.37
SHQ1-202ENST00000444040 CD302Q8IX05 232 aa17.38■□□□□ 0.37
SHQ1-202ENST00000444040 PRPF38AQ8NAV1 312 aaKnown RBP17.38■□□□□ 0.37
SHQ1-202ENST00000444040 ZNF341Q9BYN7 854 aa17.38■□□□□ 0.37
SHQ1-202ENST00000444040 CCDC188H7C350 402 aa17.38■□□□□ 0.37
SHQ1-202ENST00000444040 FOXN3O00409 490 aaPredicted RBP17.38■□□□□ 0.37
SHQ1-202ENST00000444040 CCDC172P0C7W6 258 aa17.38■□□□□ 0.37
SHQ1-202ENST00000444040 RFX1P22670 979 aa17.38■□□□□ 0.37
SHQ1-202ENST00000444040 PALB2Q86YC2 1186 aa17.38■□□□□ 0.37
SHQ1-202ENST00000444040 C12orf56Q8IXR9 622 aa17.38■□□□□ 0.37
SHQ1-202ENST00000444040 AGBL3Q8NEM8 1001 aa17.38■□□□□ 0.37
SHQ1-202ENST00000444040 TMEM206Q9H813 350 aa17.38■□□□□ 0.37
SHQ1-202ENST00000444040 TAS2R14Q9NYV8 317 aa17.38■□□□□ 0.37
SHQ1-202ENST00000444040 PHF20L1A8MW92 1017 aa17.37■□□□□ 0.37
SHQ1-202ENST00000444040 LYPLA2O95372 231 aa17.37■□□□□ 0.37
SHQ1-202ENST00000444040 HSPA9P38646 679 aaKnown RBP17.37■□□□□ 0.37
SHQ1-202ENST00000444040 SPP2Q13103 211 aa17.37■□□□□ 0.37
SHQ1-202ENST00000444040 ALCAMQ13740 583 aa17.37■□□□□ 0.37
SHQ1-202ENST00000444040 ARHGAP44Q17R89 818 aa17.37■□□□□ 0.37
SHQ1-202ENST00000444040 PCNX4Q63HM2 1172 aa17.37■□□□□ 0.37
SHQ1-202ENST00000444040 INTS8Q75QN2 995 aaKnown RBP17.37■□□□□ 0.37
SHQ1-202ENST00000444040 DDX47Q9H0S4 455 aaKnown RBP17.37■□□□□ 0.37
SHQ1-202ENST00000444040 PCIF1Q9H4Z3 704 aa17.37■□□□□ 0.37
SHQ1-202ENST00000444040 AMFRQ9UKV5 643 aa17.37■□□□□ 0.37
SHQ1-202ENST00000444040 LOXHD1Q8IVV2 1947 aa17.37■□□□□ 0.37
SHQ1-202ENST00000444040 RGPD3A6NKT7 1758 aaPredicted RBP17.37■□□□□ 0.37
SHQ1-202ENST00000444040 RGPD4Q7Z3J3 1758 aa17.37■□□□□ 0.37
SHQ1-202ENST00000444040 EMSYQ7Z589 1322 aa17.37■□□□□ 0.37
SHQ1-202ENST00000444040 KRIT1O00522 736 aa17.37■□□□□ 0.37
SHQ1-202ENST00000444040 WNT10BO00744 389 aa17.37■□□□□ 0.37
SHQ1-202ENST00000444040 ITGA4P13612 1032 aa17.37■□□□□ 0.37
SHQ1-202ENST00000444040 SKOR1P84550 965 aa17.37■□□□□ 0.37
SHQ1-202ENST00000444040 PPP3CAQ08209 521 aa17.37■□□□□ 0.37
SHQ1-202ENST00000444040 CUL1Q13616 776 aa17.37■□□□□ 0.37
SHQ1-202ENST00000444040 NBPF9Q3BBW0 867 aa17.37■□□□□ 0.37
SHQ1-202ENST00000444040 ARHGEF26Q96DR7 871 aa17.37■□□□□ 0.37
SHQ1-202ENST00000444040 CAPS2Q9BXY5 557 aa17.37■□□□□ 0.37
SHQ1-202ENST00000444040 PPP1R9AQ9ULJ8 1098 aa17.37■□□□□ 0.37
SHQ1-202ENST00000444040 TTC7AQ9ULT0 858 aaPredicted RBP17.37■□□□□ 0.37
SHQ1-202ENST00000444040 GRIN2DO15399 1336 aa17.36■□□□□ 0.37
SHQ1-202ENST00000444040 DDX3YO15523 660 aaKnown RBP17.36■□□□□ 0.37
SHQ1-202ENST00000444040 KRT13P13646 458 aa17.36■□□□□ 0.37
SHQ1-202ENST00000444040 PLS3P13797 630 aa17.36■□□□□ 0.37
SHQ1-202ENST00000444040 ABCB4P21439 1286 aa17.36■□□□□ 0.37
SHQ1-202ENST00000444040 QARSP47897 775 aaKnown RBP17.36■□□□□ 0.37
SHQ1-202ENST00000444040 C1orf220Q5T0J3 134 aa17.36■□□□□ 0.37
SHQ1-202ENST00000444040 MCF2L2Q86YR7 1114 aa17.36■□□□□ 0.37
SHQ1-202ENST00000444040 CTNNBL1Q8WYA6 563 aaPredicted RBP17.36■□□□□ 0.37
SHQ1-202ENST00000444040 CBWD1Q9BRT8 395 aa17.36■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms