RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 ADORA2BP29275 332 aa12.88□□□□□ -0.35
CCDC88A-207ENST00000436346 C11orf57Q6ZUT1 292 aaPredicted RBP12.88□□□□□ -0.35
CCDC88A-207ENST00000436346 TRAIPQ9BWF2 469 aa12.88□□□□□ -0.35
CCDC88A-207ENST00000436346 CRB1P82279 1406 aa12.88□□□□□ -0.35
CCDC88A-207ENST00000436346 HSPA6P17066 643 aa12.88□□□□□ -0.35
CCDC88A-207ENST00000436346 SSTR3P32745 418 aaPredicted RBP12.88□□□□□ -0.35
CCDC88A-207ENST00000436346 SLC7A5Q01650 507 aa12.88□□□□□ -0.35
CCDC88A-207ENST00000436346 VPS39Q96JC1 886 aa12.88□□□□□ -0.35
CCDC88A-207ENST00000436346 PCDHA5Q9Y5H7 936 aa12.88□□□□□ -0.35
CCDC88A-207ENST00000436346 FAM196BA6NMK8 535 aa12.88□□□□□ -0.35
CCDC88A-207ENST00000436346 OCM2P0CE71 109 aa12.88□□□□□ -0.35
CCDC88A-207ENST00000436346 OCMP0CE72 109 aaPredicted RBP12.88□□□□□ -0.35
CCDC88A-207ENST00000436346 GABPB1Q06547 395 aaPredicted RBP12.88□□□□□ -0.35
CCDC88A-207ENST00000436346 LXNQ9BS40 222 aa12.88□□□□□ -0.35
CCDC88A-207ENST00000436346 EPB41L3Q9Y2J2 1087 aaPredicted RBP12.88□□□□□ -0.35
CCDC88A-207ENST00000436346 M0QYV0 167 aa12.88□□□□□ -0.35
CCDC88A-207ENST00000436346 PRPF4O43172 522 aaKnown RBP eCLIP12.88□□□□□ -0.355e-22■□□□□ 10.4
CCDC88A-207ENST00000436346 FGGP02679 453 aa12.88□□□□□ -0.35
CCDC88A-207ENST00000436346 ZMYND12Q9H0C1 365 aa12.88□□□□□ -0.35
CCDC88A-207ENST00000436346 NINQ8N4C6 2090 aa12.87□□□□□ -0.35
CCDC88A-207ENST00000436346 NKX1-1Q15270 411 aaPredicted RBP12.87□□□□□ -0.35
CCDC88A-207ENST00000436346 ZNF394Q53GI3 561 aa12.87□□□□□ -0.35
CCDC88A-207ENST00000436346 ATG16L1Q676U5 607 aa12.87□□□□□ -0.35
CCDC88A-207ENST00000436346 DYRK4Q9NR20 520 aa12.87□□□□□ -0.35
CCDC88A-207ENST00000436346 POTEFA5A3E0 1075 aa12.87□□□□□ -0.35
CCDC88A-207ENST00000436346 POTEIP0CG38 1075 aa12.87□□□□□ -0.35
CCDC88A-207ENST00000436346 BBS9Q3SYG4 887 aa12.87□□□□□ -0.35
CCDC88A-207ENST00000436346 POTEGQ6S5H5 508 aa12.87□□□□□ -0.35
CCDC88A-207ENST00000436346 POTEEQ6S8J3 1075 aa12.87□□□□□ -0.35
CCDC88A-207ENST00000436346 PADI6Q6TGC4 694 aa12.87□□□□□ -0.35
CCDC88A-207ENST00000436346 NSUN6Q8TEA1 469 aaKnown RBP12.87□□□□□ -0.35
CCDC88A-207ENST00000436346 IQCA1LA6NCM1 817 aa12.87□□□□□ -0.35
CCDC88A-207ENST00000436346 RPAP3Q9H6T3 665 aaPredicted RBP12.87□□□□□ -0.35
CCDC88A-207ENST00000436346 CNOT10Q9H9A5 744 aaKnown RBP12.87□□□□□ -0.35
CCDC88A-207ENST00000436346 FGFR1OP2Q9NVK5 253 aa12.87□□□□□ -0.35
CCDC88A-207ENST00000436346 MAP3K20Q9NYL2 800 aaKnown RBP12.87□□□□□ -0.35
CCDC88A-207ENST00000436346 MROH7-TTC4A0A0A0MT08 1334 aa12.87□□□□□ -0.35
CCDC88A-207ENST00000436346 LDHAP00338 332 aaKnown RBP12.87□□□□□ -0.35
CCDC88A-207ENST00000436346 GRIK1P39086 918 aa12.87□□□□□ -0.35
CCDC88A-207ENST00000436346 TAF11Q15544 211 aa12.87□□□□□ -0.35
CCDC88A-207ENST00000436346 SH3KBP1Q96B97 665 aa12.87□□□□□ -0.35
CCDC88A-207ENST00000436346 RPAP1Q9BWH6 1393 aaPredicted RBP12.87□□□□□ -0.35
CCDC88A-207ENST00000436346 KBTBD13C9JR72 458 aa12.87□□□□□ -0.35
CCDC88A-207ENST00000436346 DNAJC8O75937 253 aaPredicted RBP12.87□□□□□ -0.35
CCDC88A-207ENST00000436346 AP3B2Q13367 1082 aa12.87□□□□□ -0.35
CCDC88A-207ENST00000436346 NRBF2Q96F24 287 aa12.87□□□□□ -0.35
CCDC88A-207ENST00000436346 EVPLQ92817 2033 aa12.87□□□□□ -0.35
CCDC88A-207ENST00000436346 CFLARO15519 480 aa12.87□□□□□ -0.35
CCDC88A-207ENST00000436346 TRIM4Q9C037 500 aa12.87□□□□□ -0.35
CCDC88A-207ENST00000436346 THEGQ9P2T0 379 aa12.87□□□□□ -0.35
CCDC88A-207ENST00000436346 SLFN14P0C7P3 912 aa12.87□□□□□ -0.35
CCDC88A-207ENST00000436346 SLC8A1P32418 973 aa12.87□□□□□ -0.35
CCDC88A-207ENST00000436346 RESP18Q5W5W9 173 aa12.87□□□□□ -0.35
CCDC88A-207ENST00000436346 OSBP2Q969R2 916 aa12.87□□□□□ -0.35
CCDC88A-207ENST00000436346 EDEM3Q9BZQ6 932 aa12.87□□□□□ -0.35
CCDC88A-207ENST00000436346 CTNND1O60716 968 aaKnown RBP12.86□□□□□ -0.35
CCDC88A-207ENST00000436346 ANLNQ9NQW6 1124 aa12.86□□□□□ -0.35
CCDC88A-207ENST00000436346 ZNF212Q9UDV6 495 aa12.86□□□□□ -0.35
CCDC88A-207ENST00000436346 FRMD3A2A2Y4 597 aa12.86□□□□□ -0.35
CCDC88A-207ENST00000436346 SLC16A4O15374 487 aa12.86□□□□□ -0.35
CCDC88A-207ENST00000436346 TRPA1O75762 1119 aa12.86□□□□□ -0.35
CCDC88A-207ENST00000436346 LBHD1Q9BQE6 289 aaPredicted RBP12.86□□□□□ -0.35
CCDC88A-207ENST00000436346 MRPL4Q9BYD3 311 aaKnown RBP12.86□□□□□ -0.35
CCDC88A-207ENST00000436346 ADGRF4Q8IZF3 695 aa12.86□□□□□ -0.35
CCDC88A-207ENST00000436346 PBXIP1Q96AQ6 731 aa12.86□□□□□ -0.35
CCDC88A-207ENST00000436346 FAM213AQ9BRX8 229 aa12.86□□□□□ -0.35
CCDC88A-207ENST00000436346 PIH1D3Q9NQM4 214 aaKnown RBP12.86□□□□□ -0.35
CCDC88A-207ENST00000436346 ANKRD26Q9UPS8 1709 aa12.86□□□□□ -0.35
CCDC88A-207ENST00000436346 GPSM2P81274 684 aa12.86□□□□□ -0.35
CCDC88A-207ENST00000436346 HDLBPQ00341 1268 aaKnown RBP12.86□□□□□ -0.35
CCDC88A-207ENST00000436346 TTC8Q8TAM2 541 aa12.86□□□□□ -0.35
CCDC88A-207ENST00000436346 BCL2L12Q9HB09 334 aa12.86□□□□□ -0.35
CCDC88A-207ENST00000436346 SUFUQ9UMX1 484 aa12.86□□□□□ -0.35
CCDC88A-207ENST00000436346 G3BP2Q9UN86 482 aaKnown RBP12.86□□□□□ -0.35
CCDC88A-207ENST00000436346 PTK2BQ14289 1009 aa12.86□□□□□ -0.35
CCDC88A-207ENST00000436346 ARL6IP4Q66PJ3 421 aaKnown RBP12.86□□□□□ -0.35
CCDC88A-207ENST00000436346 CRLF3Q8IUI8 442 aa12.86□□□□□ -0.35
CCDC88A-207ENST00000436346 STAP2Q9UGK3 403 aa12.86□□□□□ -0.35
CCDC88A-207ENST00000436346 AFF4Q9UHB7 1163 aaKnown RBP12.86□□□□□ -0.35
CCDC88A-207ENST00000436346 PCDHA6Q9UN73 950 aa12.86□□□□□ -0.35
CCDC88A-207ENST00000436346 PCDHA8Q9Y5H6 950 aa12.86□□□□□ -0.35
CCDC88A-207ENST00000436346 ARHGDIAP52565 204 aa12.86□□□□□ -0.35
CCDC88A-207ENST00000436346 SERPINI1Q99574 410 aa12.86□□□□□ -0.35
CCDC88A-207ENST00000436346 TDRD3Q9H7E2 651 aaKnown RBP12.86□□□□□ -0.35
CCDC88A-207ENST00000436346 SUN2Q9UH99 717 aa12.86□□□□□ -0.35
CCDC88A-207ENST00000436346 SRPRBQ9Y5M8 271 aaKnown RBP12.86□□□□□ -0.35
CCDC88A-207ENST00000436346 TBXAS1P24557 533 aaPredicted RBP12.86□□□□□ -0.35
CCDC88A-207ENST00000436346 KIF23Q02241 960 aaPredicted RBP12.86□□□□□ -0.35
CCDC88A-207ENST00000436346 CUL1Q13616 776 aa12.86□□□□□ -0.35
CCDC88A-207ENST00000436346 CC2D1AQ6P1N0 951 aaPredicted RBP12.86□□□□□ -0.35
CCDC88A-207ENST00000436346 CCDC138Q96M89 665 aa12.86□□□□□ -0.35
CCDC88A-207ENST00000436346 GABBR1Q9UBS5 961 aa12.86□□□□□ -0.35
CCDC88A-207ENST00000436346 KIF1AQ12756 1690 aa12.85□□□□□ -0.35
CCDC88A-207ENST00000436346 HSPA4LO95757 839 aa12.85□□□□□ -0.35
CCDC88A-207ENST00000436346 PAPOLAP51003 745 aaKnown RBP12.85□□□□□ -0.35
CCDC88A-207ENST00000436346 KRT31Q15323 416 aa12.85□□□□□ -0.35
CCDC88A-207ENST00000436346 BCAS4Q8TDM0 211 aa12.85□□□□□ -0.35
CCDC88A-207ENST00000436346 RABGGTAQ92696 567 aa12.85□□□□□ -0.35
CCDC88A-207ENST00000436346 MAGEB5Q9BZ81 275 aa12.85□□□□□ -0.35
CCDC88A-207ENST00000436346 ASNSD1Q9NWL6 643 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms