RNA–Protein interactions for RNA: ENST00000435425.1

SHH-203, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 807 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-203ENST00000435425 ZSCAN20P17040 1043 aaPredicted RBP20.72■□□□□ 0.91
SHH-203ENST00000435425 ARL2P36404 184 aa20.72■□□□□ 0.91
SHH-203ENST00000435425 MXD4Q14582 209 aaPredicted RBP20.72■□□□□ 0.91
SHH-203ENST00000435425 MCPH1Q8NEM0 835 aa20.72■□□□□ 0.91
SHH-203ENST00000435425 CALML4Q96GE6 196 aa20.72■□□□□ 0.91
SHH-203ENST00000435425 TSPYL2Q9H2G4 693 aaPredicted RBP20.72■□□□□ 0.91
SHH-203ENST00000435425 CERS4Q9HA82 394 aa20.72■□□□□ 0.91
SHH-203ENST00000435425 IFT122Q9HBG6 1241 aa20.72■□□□□ 0.91
SHH-203ENST00000435425 ARHGEF15O94989 841 aa20.71■□□□□ 0.91
SHH-203ENST00000435425 CYP11B2P19099 503 aa20.71■□□□□ 0.91
SHH-203ENST00000435425 SFPQP23246 707 aaKnown RBP eCLIP20.71■□□□□ 0.91
SHH-203ENST00000435425 GLRA2P23416 452 aa20.71■□□□□ 0.91
SHH-203ENST00000435425 TFDP1Q14186 410 aa20.71■□□□□ 0.91
SHH-203ENST00000435425 SLC39A14Q15043 492 aa20.71■□□□□ 0.91
SHH-203ENST00000435425 CATSPER4Q7RTX7 472 aa20.71■□□□□ 0.91
SHH-203ENST00000435425 YME1L1Q96TA2 773 aa20.71■□□□□ 0.91
SHH-203ENST00000435425 NT5C3AQ9H0P0 336 aa20.71■□□□□ 0.91
SHH-203ENST00000435425 RGS18Q9NS28 235 aa20.71■□□□□ 0.91
SHH-203ENST00000435425 MTMR10Q9NXD2 777 aa20.71■□□□□ 0.91
SHH-203ENST00000435425 LRFN2Q9ULH4 789 aa20.71■□□□□ 0.91
SHH-203ENST00000435425 INSL6Q9Y581 213 aa20.71■□□□□ 0.91
SHH-203ENST00000435425 SRPRBQ9Y5M8 271 aaKnown RBP20.71■□□□□ 0.91
SHH-203ENST00000435425 TTC3P53804 2025 aa20.71■□□□□ 0.91
SHH-203ENST00000435425 TMEM265A0A087WTH1 108 aa20.7■□□□□ 0.9
SHH-203ENST00000435425 PHKA2P46019 1235 aa20.7■□□□□ 0.9
SHH-203ENST00000435425 CAPSQ13938 189 aa20.7■□□□□ 0.9
SHH-203ENST00000435425 DSC3Q14574 896 aa20.7■□□□□ 0.9
SHH-203ENST00000435425 KARSQ15046 597 aaKnown RBP20.7■□□□□ 0.9
SHH-203ENST00000435425 HYIQ5T013 277 aa20.7■□□□□ 0.9
SHH-203ENST00000435425 SRGAP1Q7Z6B7 1085 aa20.7■□□□□ 0.9
SHH-203ENST00000435425 EPSTI1Q96J88 318 aa20.7■□□□□ 0.9
SHH-203ENST00000435425 MINDY3Q9H8M7 445 aa20.7■□□□□ 0.9
SHH-203ENST00000435425 LAMA3Q16787 3333 aa20.7■□□□□ 0.9
SHH-203ENST00000435425 LRRIQ4A6NIV6 560 aa20.69■□□□□ 0.9
SHH-203ENST00000435425 STAG3L1P0CL83 205 aa20.69■□□□□ 0.9
SHH-203ENST00000435425 NASPP49321 788 aaPredicted RBP20.69■□□□□ 0.9
SHH-203ENST00000435425 SARSP49591 514 aaKnown RBP20.69■□□□□ 0.9
SHH-203ENST00000435425 HTRA4P83105 476 aaPredicted RBP20.69■□□□□ 0.9
SHH-203ENST00000435425 DHX8Q14562 1220 aaKnown RBP20.69■□□□□ 0.9
SHH-203ENST00000435425 GRIN2CQ14957 1233 aa20.69■□□□□ 0.9
SHH-203ENST00000435425 TMEM119Q4V9L6 283 aa20.69■□□□□ 0.9
SHH-203ENST00000435425 USP49Q70CQ1 688 aa20.69■□□□□ 0.9
SHH-203ENST00000435425 SLC24A5Q71RS6 500 aa20.69■□□□□ 0.9
SHH-203ENST00000435425 LINC00301Q8NCQ3 95 aa20.69■□□□□ 0.9
SHH-203ENST00000435425 C1orf112Q9NSG2 853 aa20.69■□□□□ 0.9
SHH-203ENST00000435425 PCDHB7Q9Y5E2 793 aa20.69■□□□□ 0.9
SHH-203ENST00000435425 LAMA2P24043 3122 aaKnown RBP20.69■□□□□ 0.9
SHH-203ENST00000435425 INO80B-WBP1J3KQ70 363 aa20.68■□□□□ 0.9
SHH-203ENST00000435425 SPTLC2O15270 562 aa20.68■□□□□ 0.9
SHH-203ENST00000435425 PLA2G4BP0C869 781 aa20.68■□□□□ 0.9
SHH-203ENST00000435425 PTENP60484 403 aa20.68■□□□□ 0.9
SHH-203ENST00000435425 TAP1Q03518 808 aa20.68■□□□□ 0.9
SHH-203ENST00000435425 RAD51AP2Q09MP3 1159 aa20.68■□□□□ 0.9
SHH-203ENST00000435425 RINT1Q6NUQ1 792 aa20.68■□□□□ 0.9
SHH-203ENST00000435425 SPRED2Q7Z698 418 aa20.68■□□□□ 0.9
SHH-203ENST00000435425 NPAS4Q8IUM7 802 aa20.68■□□□□ 0.9
SHH-203ENST00000435425 KRI1Q8N9T8 703 aaKnown RBP20.68■□□□□ 0.9
SHH-203ENST00000435425 GUCD1Q96NT3 240 aa20.68■□□□□ 0.9
SHH-203ENST00000435425 RUSC1Q9BVN2 902 aa20.68■□□□□ 0.9
SHH-203ENST00000435425 PRDM12Q9H4Q4 367 aa20.68■□□□□ 0.9
SHH-203ENST00000435425 PIN4Q9Y237 131 aaKnown RBP20.68■□□□□ 0.9
SHH-203ENST00000435425 ZDHHC9Q9Y397 364 aa20.68■□□□□ 0.9
SHH-203ENST00000435425 MYH11P35749 1972 aa20.67■□□□□ 0.9
SHH-203ENST00000435425 C9IYK1 514 aa20.67■□□□□ 0.9
SHH-203ENST00000435425 BRD1O95696 1058 aa20.67■□□□□ 0.9
SHH-203ENST00000435425 PLCG1P19174 1290 aa20.67■□□□□ 0.9
SHH-203ENST00000435425 GATMP50440 423 aa20.67■□□□□ 0.9
SHH-203ENST00000435425 DNM1Q05193 864 aaKnown RBP20.67■□□□□ 0.9
SHH-203ENST00000435425 SYT2Q8N9I0 419 aaPredicted RBP20.67■□□□□ 0.9
SHH-203ENST00000435425 RNF169Q8NCN4 708 aa20.67■□□□□ 0.9
SHH-203ENST00000435425 MYLIPQ8WY64 445 aa20.67■□□□□ 0.9
SHH-203ENST00000435425 BSNDQ8WZ55 320 aa20.67■□□□□ 0.9
SHH-203ENST00000435425 SYMPKQ92797 1274 aaKnown RBP20.67■□□□□ 0.9
SHH-203ENST00000435425 CDX2Q99626 313 aaPredicted RBP20.67■□□□□ 0.9
SHH-203ENST00000435425 CCSER1Q9C0I3 900 aa20.67■□□□□ 0.9
SHH-203ENST00000435425 MTUS1Q9ULD2 1270 aa20.67■□□□□ 0.9
SHH-203ENST00000435425 LINC01553A4QN01 128 aa20.66■□□□□ 0.9
SHH-203ENST00000435425 SLC26A4O43511 780 aa20.66■□□□□ 0.9
SHH-203ENST00000435425 HIP1RO75146 1068 aa20.66■□□□□ 0.9
SHH-203ENST00000435425 ERLIN2O94905 339 aa20.66■□□□□ 0.9
SHH-203ENST00000435425 YEATS4O95619 227 aa20.66■□□□□ 0.9
SHH-203ENST00000435425 TXLNAP40222 546 aa20.66■□□□□ 0.9
SHH-203ENST00000435425 PAN2Q504Q3 1202 aaKnown RBP20.66■□□□□ 0.9
SHH-203ENST00000435425 TWF2Q6IBS0 349 aaKnown RBP20.66■□□□□ 0.9
SHH-203ENST00000435425 ARNTL2Q8WYA1 636 aa20.66■□□□□ 0.9
SHH-203ENST00000435425 IFT74Q96LB3 600 aa20.66■□□□□ 0.9
SHH-203ENST00000435425 CCDC39Q9UFE4 941 aa20.66■□□□□ 0.9
SHH-203ENST00000435425 NLRC5Q86WI3 1866 aa20.66■□□□□ 0.9
SHH-203ENST00000435425 RFXAPO00287 272 aa20.65■□□□□ 0.9
SHH-203ENST00000435425 DGKIO75912 1065 aa20.65■□□□□ 0.9
SHH-203ENST00000435425 LIG1P18858 919 aa20.65■□□□□ 0.9
SHH-203ENST00000435425 NCLP19338 710 aaKnown RBP20.65■□□□□ 0.9
SHH-203ENST00000435425 SLC12A3P55017 1021 aa20.65■□□□□ 0.9
SHH-203ENST00000435425 POU5F1BQ06416 359 aa20.65■□□□□ 0.9
SHH-203ENST00000435425 MCM6Q14566 821 aa20.65■□□□□ 0.9
SHH-203ENST00000435425 FAM43BQ6ZT52 329 aaPredicted RBP20.65■□□□□ 0.9
SHH-203ENST00000435425 C1orf186Q6ZWK4 172 aa20.65■□□□□ 0.9
SHH-203ENST00000435425 ZBTB8OSQ8IWT0 167 aa20.65■□□□□ 0.9
SHH-203ENST00000435425 KCTD17Q8N5Z5 321 aa20.65■□□□□ 0.9
SHH-203ENST00000435425 DEPTORQ8TB45 409 aa20.65■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms